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Biocatálise na produção de moléculas orgânicas: oxidorredutases de fungos marinhos para a síntese de álcoois quirais e lipase de Candida antarctica na produção de amidas fenólicas graxas / Biocatalysis in organic molecules production: synthesis of chiral alcohols by oxidoreductases from marine fungi and production of phenolic fatty amides by lipase from Candida antarcticaMouad, Ana Maria 07 February 2014 (has links)
Neste trabalho, enzimas álcool-desidrogenases provenientes de fungos marinhos e a lipase imobilizada de Candida antarctica foram utilizadas para produção de compostos de interesse sintético e biológico. No capítulo 1, enzimas álcool-desidrogenases de fungos isolados da alga marinha Bostrychia radicans foram empregadas em reações de redução de cetonas fluoradas 1-5. Os fungos identificados como Botryosphaeria sp. CBMAI 1197, Eutypella sp. CBMAI 1196, Hidropisphaera sp. CBMAI 1194 e Xylaria sp. CBMAI 119 atuaram como biocatalisadores nestas reações levando à produção de álcoois com elevada pureza enantiomérica. O fungo Botryosphaeria sp. CBMAI 1197 destacou-se frente aos demais microrganismos, produzindo os álcoois (S)-2,2,2-trifluoro-1-feniletanol (1a) e (R)-1-(2,4,5-trifluorofenil)etanol (3a) com excelentes conversões (100% e 97%) e excessos enantioméricos (ee >99%). Este fungo também apresentou enzimas álcool-desidrogenases ativas frente a cetonas dicarboniladas 4-5, produzindo os álcoois 4,4,4-trifluoro-1-fenil-1,3-butanodiol (4a) e 4,4,4-trifluoro-1-(2-naftalenil)-1,3-butanodiol (5a) com 100% de conversão em ambos os casos e com purezas enantioméricas respectivas a 99% e 97%. Este foi o primeiro estudo realizado no Brasil com fluorocetonas dicarboniladas e com os fungos isolados da alga marinha Bostrychia radicans. No capítulo 2, a lipase comercial de Candida antarctica foi o biocatalisador empregado em reações de aminólise entre os ésteres linoleato de etila (1) e salicilato de etila (3), a amina graxa N-dodecilamina (2) e os aminoálcoois (4-9). A amina graxa N-dodecilamina (2) também foi utilizada em reações com o linoleato de etila (1), onde a lipase de Candida antarctica produziu a respectiva amida graxa 10 com rendimentos superiores a 95%. Os aminoálcoois foram selecionados para reações com o salicilato de etila (3), onde a lipase exibiu quimiosseletividade pelo grupo amino, produzindo predominantemente amidas fenólicas (12-19) com rendimentos entre 23-68%. A enzima CALB apresentou quimiosseletividade reduzida na reação com o 5-aminopentanol (6) onde os produtos amida 14 e éster 15 foram obtidos com rendimentos de 44 e 33%, respectivamente. O produto 2-hidroxi-N-(2-hidroxipropil)benzamida (19) foi obtido com rendimento superior a 90% a partir da reação catalisada pela lipase de Candida antarctica. Este produto foi selecionado como intermediário para a síntese de uma molécula hidrofóbica 21 que apresenta o éster oleato de etila em sua constituição. O produto 21 foi obtido com 75% de rendimento. As amidas fenólicas 12-21 produzidas neste trabalho são derivadas do ácido linoleico (ômega 6) e do ácido salicílico, os quais apresentam propriedades emolientes e antioxidantes. Estes compostos são interessantes para a formulação de produtos cosméticos de aplicação cutânea. Neste processo biotecnológico as reações foram conduzidas na ausência de solventes orgânicos, evitando o tratamento de solventes voláteis e a formação de subprodutos. Os compostos foram analisados por Cromatografia líquida de alta eficiência e caracterizados por RMN (1H, 13C), EMAR e IV. A aplicação de reações de biocatálise seja através de células microbianas ou de enzimas isoladas foram muito promissoras na síntese de compostos orgânicos de interesse como álcoois enantiomericamente puros ou amidas graxas. / In this work, alcohol dehydrogenase (ADHs) enzymes from marine fungi and immobilized lipase from Candida antarctica were employed for the production of compounds of biological and synthetic interest. In chapter 1, ADHs of fungi isolated from the marine alga Bostrychia radicans were used in reduction reactions of fluorinated ketones 1-5. The fungi identified as Botryosphaeria sp. CBMAI 1197, Eutypella sp. CBMAI 1196, Hidropisphaera sp. CBMAI 1194 and Xylaria sp. CBMAI 119 acted as biocatalysts in these reactions leading to production of alcohols with high enantiomeric purity. The fungus Botryosphaeria sp. CBMAI 1197 presented highlighted compared to other microorganisms producing the alcohols (S)-2,2,2-trifluoro-1-phenylethanol (1a) and (R) -1 - (2,4,5-trifluorophenyl) ethanol (3a) with excellent conversions (100% and 97%) and enantiomeric excesses (ee > 99%). This fungus also exhibited ADHs enzymes active with dicarbonylateds ketones, leading to the production of the alcohols 4,4,4-trifluoro-1-phenylbutane-1,3-diol (4a) and 4,4,4-trifluoro-1-(naphthalen-2-yl)butane-1,3-diol -1,3-butanediol (5a) with conversions of 100% in both cases and enantiomeric excess of 99%-97%, respectively. This was the first study conducted with dicarbonilated fluoroketones 4-5 and with fungi isolated from the marine alga Bostrychia radicans in Brazil. In chapter 2, immobilized lipase from Candida antarctica was used as biocatalyst in the aminolysis reaction between esters of ethyl linoleate (1) and ethyl salicylate (3), the fatty amine N-dodecylamine (2) and the aminoalcohols (4-8). Six aminoalcohols were selected for reactions with ethyl salicylate (3), where the lipase exhibited chemoselectivity by the amino groups, producing predominantly phenolic amides in yields of 23-63%. The CALB exhibited um reduction in chemoselectivity in the reaction with 5-aminopentanol (6) where the amide 14 and ester 15 products were obtained with 44% and 33% yields. The product 2-hydroxy-N-(2-hydroxypropyl) benzamide (19) was obtained in yield greater than 90% from the reaction catalyzed by lipase from Candida antarctica. This product was selected as reagente for the synthesis of a hydrophobic molecule 21 presenting ester ethyl oleate in its constitution. The product 21 was obtained in 75% yield. The phenolic amides 12-21 produced in this work are derived from linoleic acid (omega 6) and salicylic acid, which presents emollient and antioxidants properties. These compounds are interesting for the formulation of cosmetic products for skin application. In this biotechnological process, the reactions were carried out under solvent-free conditions and vacum, avoiding the treatment of volatile solvents and by-product formation. The compounds were analyzed by high performance liquid chromatography and characterized by NMR (1H, 13C), IR and HRMS. Applying biocatalysis reactions, either through microbial cells or isolated enzymes were promising for the synthesis of organic compounds such as enantiomerically pure alcohols and fatty phenolic amides.
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Catalyseurs hétérogènes à base de polysaccharides pour des réactions pallado-catalysées / Heterogeneous catalysts based on polysaccharides for palladium-catalyzed reactionsOuchaou, Kahina 09 November 2012 (has links)
Les travaux de thèse présentés dans ce manuscrit portent essentiellement sur la préparation, le criblage et l’utilisation des catalyseurs hétérogènes à base de polysaccharides. L’objectif principal du projet de thèse a plus particulièrement consisté à évaluer deux polysaccharides : les alginates et le chitosane en tant que supports renouvelables pour la catalyse hétérogène. Ces deux types de polysaccharides ont des structures et des propriétés physico-chimiques très différentes : les alginates sont connus pour être de bons complexants de métaux di ou trivalents de par la présence des fonctions carboxylates dans leur matrice, le chitosane résulte quant à lui de l’assemblage d’unités N-glucosamine pouvant être facilement modifiées chimiquement.Dans un premier temps, nos travaux ont essentiellement portés sur des catalyseurs bimétalliques Mn+ Pd supportés sur alginate dont nous avons évalué l’activité catalytique dans les réactions de couplage C—C de Mizoroki-Heck, Sonogashira et Suzuki-Miyaura. D’une manière générale, seuls les catalyseurs à base de nanoparticules de palladium ont montré une réactivité intéressante pour la catalyse de la réaction de Suzuki-Miyaura. Par la suite, nous avons également étudié les réactions d’oxydations d’alcools catalysées par du palladium (II) complexé à l’alginate. Cette étude nous a permis d’identifier deux catalyseurs actifs vis-à-vis de l’oxydation d’alcools allyliques et benzyliques.Dans un deuxième temps, nous avons développé de nouveaux ligands de type NHC en vue de les greffer sur la matrice chitosane : un ligand NHC pour les réactions de métathèse d’oléfines, et plusieurs ligands NHC de type pincer CNC pour les réactions de couplage C—C dans l’eau. Bien que les performances catalytiques des systèmes hétérogènes correspondant soient limitées, ces travaux ont conduit à l’élaboration de nouveaux ligands amphiphiles construits autour d’un noyau pyrazine porteurs de quatre ligands carbéniques. Après complexation de métaux tels que le palladium ou l’or, ces systèmes conduisent à des nanocatalyseurs ayant des performances catalytiques intéressantes. Enfin, dans un troisième temps, nous avons développé une nouvelle réaction de cyanation décarboxylante pallado-catalysée permettant de transformer en une étape des acides carboxyliques aromatiques en benzonitriles correspondants. Outre son intérêt synthétique, cette réaction présente un grand intérêt pour le marquage isotopique. / This work describes the preparation, screening and use of heterogeneous catalysts based on polysaccharides. The main goal of our project was to evaluate two polysaccharides: alginates and chitosan as renewable supports for heterogeneous catalysis.Alginates are known to form gels with most di- and multivalent cations due to the presence of the carboxylate functions of their matrix. And chitosan is an attractive polysaccharide for application in catalysis owing to the presence of readily functionalizable amino group and its insolubility in organic solvents.First, our work focused on evaluating the catalytic activity of bimetallic Mn+-Pd catalysts supported on alginate in C—C coupling reactions. Among them, one system demonstrated remarkable catalytic properties for the Suzuki-Miyaura coupling. Then, the oxidation of alcohols catalyzed by Alginate-Mn+-Pd2+ catalyst was investigated. Two catalysts demonstrated good activity for oxidation of benzylic and allylic alcohol.In a second time, we developed new NHC ligands in order to anchor them on chitosan: two new NHC ligands for olefin metathesis and several NHC pincer CNC ligands for C—C coupling reactions in water. A palladium complex obtained with one our new ligand bearing long alkyl chains showed good activity in the Suzuki-Miyaura coupling in pure water.Finally, a new palladium (II) catalyzed decarboxylative cyanation reaction was investigated. This methodology is the first example of direct conversion of aryl carboxylic acid into the corresponding aryl nitrile. This reaction is well adapted to labeled compound synthesis.
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Approches synthétiques vers le mycothiazole-4,19-diol : utilisation du palladium en synthèse organique / Synthetic approaches towards the mycothiazole-4,19-diol : use of palladium in organic synthesisBatt, Frédéric 17 December 2009 (has links)
Le mycothiazole-4,19-diol, découvert en 2006, est une molécule naturelle isolée de l’éponge marine cacospongia mycofijiensis, dont il n’existe à ce jour aucune synthèse. La structure originale, combinée à la faible abondance naturelle et à une activité biologique potentielle du mycothiazole-4,19-diol font de cette molécule une cible synthétique attractive pour le chimiste organicien et constitue l’objectif de ces travaux de thèse. Le principal enjeu de cette synthèse est la construction du motif diol-1,2 allylique. Au total, quatre déconnections ont été étudiées. Pour chacune d’entre elles, plusieurs approches ont été effectuées afin de construire de manière efficace et élégante le mycothiazole-4,19-diol. Une étude sur l’utilisation du palladium en synthèse organique a également été effectuée au cours cette thèse. Parmi les nombreux systèmes catalytiques dans lesquels ce métal intervient, nous nous sommes intéressés à l’oxydation aérobique des alcools en leurs dérivés carbonylés. Nous avons élaboré un nouveau système permettant l’oxydation sélective des alcools allyliques. Les résultats obtenus sur la haute chimiosélectivité intramoléculaire font de cette méthode un outil puissant et efficace et a été mis à profit dans le cadre des approches du mycothiazole-4,19-diol. Une étude supplémentaire réalisée sur l’utilisation du palladium en réactions séquentielles a également été menée avec l’élaboration d’un processus oxydation aérobique-formation de liaison C-C par couplage de Heck. L’originalité de la méthodologie développée est que le catalyseur intervient dans deux réactions totalement différentes permettant ainsi la synthèse rapide de molécules relativement complexes à partir de substrats simples. / Mycothiazole-4,19-diol is a natural compound isolated in 2006 from a marine sponge cacospongia mycofijiensis which has never been synthesized. Its unique structure, its weak abundance and its potential biological activity make mycothiazole-4,19-diol an attractive target in organic chemistry. The challenge is the building of allylic diol-1,2 moiety. In order to make a concise and elegant synthesis of this molecule, four disconnections and many approaches have been studied. A study about the use of palladium in organic synthesis has also been done. Among all the catalytic systems in which this metal is involved, we were first interested in the aerobic oxidation of alcohols into their corresponding carbonyl compounds. We have elaborated a new catalytic system which enables the selective oxidation of allylic alcohols. This methodology has been applied in the different synthetic approaches towards the mycothiazole-4,19-diol. A second study has been done about the use of palladium in sequential processes. We have elaborated a new catalyzed process with two sequential different steps: allylic alcohol oxidation-Heck reaction. The originality of this system is that the catalyst is involved in both reactions which makes an easy access to functionalized α,β-unsaturated ketones from allylic alcohols.
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Ionic Liquid-Mediated Sol-Gel Sorbents for Capillary Microextraction and Challenges in Glass MicrofabricationShearrow, Anne M 18 May 2009 (has links)
Three ionic liquids (ILs), trihexyltetradecylphosphonium tetrafluoroborate (TTPT), N-butyl-4-methylpyridinium tetrafluoroborate (BMPT), and 1-methyl-3- octylimidazolium tetrafluoroborate (MOIC), were utilized to prepare sol- gel sorbent coatings. Non-polar polydimethylsiloxane (PDMS) and polar poly(ethylene glycol) (PEG), poly(tetrahydrofuran) (PolyTHF) and bis[(3-methyldimethoxy-silyl)propyl] polypropylene oxide (BMPO) polymers were employed to develop novel ionic liquidmediated sol- gel hybrid organic- inorganic sorbents. The novel sorbents were first tested as coatings for capillary microextraction off-line hyphenated to gas chromatography. To gain an understanding of the role of the ionic liquids in the sol-gel process, the preconcentration abilities of these novel coatings were investigated for several classes of compounds utilizing CME-GC. This was accomplished by comparing GC peak areas of a series of analytes extracted on the ionic liquid mediated sol-gel CME coatings with that of analogous peak areas obtained on sol- gel coatings prepared without the ionic liquid. The morphology of these coatings was compared using scanning electron microscopy (SEM) imaging data. Overall, the ionic liquid-mediated sol- gel coatings had more porous morphologies than the sol-gel coatings prepared without ionic liquid. The PDMS andBMPO sol-gel coatings prepared with ionic liquid in the sol solution provided enhanced extraction sensitivity reflected in higher preconcentration effects and lower detection limits than the sol- gel coatings prepared without the ionic liquid. The polar IL-mediated BMPO sol- gel sorbent was further investigated by exploring the extraction profile and thermal stability of these coatings. A further application of ionic liquid-mediated sol-gel sorbents could be as stationary phases in a microchip-based separation system. Towards this goal, microfluidic channels were fabricated in glass substrates using microelectromechanical engineering. Spiral and serpentine channels were etched in Pyrex and fused silica wafers using wet and deep reactive ion etching (DRIE) techniques. Microfabrication protocols such as the use of hard mask and etching times were investigated for both techniques. DRIE produced microfluidic channels that had an etch quality that was superior to wet etched channels. Thus, the ultimate microchip-based separation system should by fabricated using DRIE.
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Dynamic Covalent Resolution: Applications in System Screening and Asymmetric SynthesisVongvilai, Pornrapee January 2009 (has links)
Combined thermodynamic/kinetic events amount to a kinetically controlled Dynamic Combinatorial Resolution (DCR) process, where the lability of themolecules/aggregates are used to generate dynamics, and the species experiencing the lowest activation energy is selected via kinetic process. Bothinter- and intramolecular processes can be performed using this concept,resulting in complete resolution and associated amplification of the selected species. When intermolecular processes are resolved using this method, an additional advantage is that only a catalytic amount of selector is required tocontrol the system.In this thesis, the Henry and Strecker reactions were developed as efficient C–C bond-forming routes to single and multi-level dynamic covalent systems.These methods efficiently provided a vast variety of substrates from smallnumbers of starting compounds. These dynamic systems, generated underthermodynamic control at mild conditions, were coupled in one-pot processes with kinetically controlled lipase-mediated transacylation. The enzym emediated resolution of the dynamic nitroaldol system led to enantiomericallypure β-nitroacetates in high yield. Furthermore, combination of multi-leveldynamic Strecker systems and lipase-mediated acylation resulted in theresolution of specific α-aminonitriles from the pool.In addition, the asymmetric synthesis of discrete β-nitroalkanol derivatives wassimply achieved, resulting in high yields and high enantiomeric purities through the direct one-pot procedure. Moreover, racemase type activity oflipase enzyme through N-substituted α-aminonitrile structure has been discovered. By use of control experiments together with molecular modeling,the mechanism of the racemization process has been established. Asymmetric synthesis of N-methyl α-aminonitriles was also performed through the dualfunction of lipase, resulting in high yield and good enantio selectivity. / <p>QC 20100818</p>
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Synthesis and Reactions of α-Azido AlcoholsFirdous, Samia 13 April 2012 (has links) (PDF)
Die vorliegende Arbeit beschäftigt sich mit der Untersuchung von a-Azidoalkoholen, welche über die Reaktion von aliphatischen sowie aromatischen Aldehyden mit HN3 leicht zugänglich sind und die im Gleichgewicht mit den jeweiligen Ausgangsstoffen vorliegen. Bei Raumtemperatur stellt sich dieses Gleichgewicht sehr schnell ein und man erhält spezifische Konzentrationen an Eduktaldehyd, Stickstoffwasserstoffsäure und a-Azidoalkohol. Die Reaktion von Aldehyden mit HN3 generiert dabei ein neues Chriralitätszentrum, wodurch die Umsetzung chiraler Aldehyde, wie z. B. von Zuckerderivaten, zwei anomere Produkte hervorbringt.
Die erstmalig erfolgreichen Synthesen zur Erzeugung von 4-Brom-4-methylpentanal sowie 4-Azido-4-methylpentanal werden ebenfalls beschrieben. Letztere Verbindung reagiert dabei ebenso wenig via einer intramolekularen 1,3-dipolaren Cycloaddition zum entsprechenden 4,5-Dihydro-1,2,3,4-oxatriazol-Derivat wie das analoge-Azidobutanal, was im Gegensatz zu Literaturangaben steht.
Des Weiteren werden einige interessante Reaktionen der a-Azidoalkohole untersucht. Die Oxidation mit Pyridiniumchlorochromat (PCC) bei –60°C führt zu Carbonylaziden. Die Photolyse bei –50°C generiert unter Stickstofffreisetzung Nitrene, welche mittels Wasserstoffwanderung und anschließender Tautomerisierung des resultierenden Intermediats zu Säureamiden umlagern. Die ebenfalls mögliche 1,2-Wanderung einer Gruppe R in a-Position führt dabei zu einem Intermediat, aus welchem sofort das entsprechende Formamid-Derivat entsteht. a-Azidoalkohole reagieren mit PBr3 in einer sauberen Reaktion durch die Substitution der Hydroxylfunktion unter Bildung der jeweiligen 1-Azido-1-brom-Verbindung. / In this work, α-azido alcohols which exist in equilibrium with the starting materials have been studied by the reactions of aliphatic and aromatic aldehydes with HN3. In some cases the title compounds can be isolated from the mixture at low temperature. At room temperature, however, the equilibrium is fast and there are again specific concentrations of the aldehyde, hydrazoic acid, and the α-azido alcohol. The reaction of aldehydes with HN3 creates a new chiral center and a chiral aldehyde, e.g. sugar derivatives, produces two anomeric products.
The first procedures to prepare 4-bromo-4-methylpentanal and 4-azido-4-methylpentanal are also reported. The latter compound and also the parent 4-azidobutanal do not lead to 4,5-dihydro-1,2,3,4-oxatriazoles by intramolecular 1,3-dipolar cycloaddition, although it was claimed in the literature.
Furthermore, some interesting reactions of the α-azido alcohols have been investigated. The oxidation of α-azido alcohols with pyridinium chlorochromate (PCC) at −60 °C leads to formation of carbonyl azides. The photolysis of α-azido alcohols at −50 °C generates nitrenes with liberation of dinitrogen, which lead to the formation of acid amides after the migration of hydrogen and subsequent tautomerism of the intermediate. 1,2-Migration of a group R in the α-position can produce an intermediate stage which is rapidly converted into formamide derivative. α-Azido alcohols react with PBr3 to give 1-azido-1-bromo derivatives in a clean reaction by substitution of hydroxyl group at the α-position.
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Multivariate data analysis using spectroscopic data of fluorocarbon alcohol mixtures / Nothnagel, C.Nothnagel, Carien January 2012 (has links)
Pelchem, a commercial subsidiary of Necsa (South African Nuclear Energy Corporation), produces a range of commercial fluorocarbon products while driving research and development initiatives to support the fluorine product portfolio. One such initiative is to develop improved analytical techniques to analyse product composition during
development and to quality assure produce.
Generally the C–F type products produced by Necsa are in a solution of anhydrous HF, and cannot be directly analyzed with traditional techniques without derivatisation. A technique such as vibrational spectroscopy, that can analyze these products directly without further preparation, will have a distinct advantage. However, spectra of mixtures of similar compounds are complex and not suitable for traditional quantitative regression analysis.
Multivariate data analysis (MVA) can be used in such instances to exploit the complex nature of spectra to extract quantitative information on the composition of mixtures.
A selection of fluorocarbon alcohols was made to act as representatives for fluorocarbon compounds. Experimental design theory was used to create a calibration range of mixtures
of these compounds. Raman and infrared (NIR and ATR–IR) spectroscopy were used to
generate spectral data of the mixtures and this data was analyzed with MVA techniques by
the construction of regression and prediction models. Selected samples from the mixture
range were chosen to test the predictive ability of the models.
Analysis and regression models (PCR, PLS2 and PLS1) gave good model fits (R2 values larger
than 0.9). Raman spectroscopy was the most efficient technique and gave a high prediction
accuracy (at 10% accepted standard deviation), provided the minimum mass of a
component exceeded 16% of the total sample.
The infrared techniques also performed well in terms of fit and prediction. The NIR spectra were subjected to signal saturation as a result of using long path length sample cells. This was shown to be the main reason for the loss in efficiency of this technique compared to Raman and ATR–IR spectroscopy.
It was shown that multivariate data analysis of spectroscopic data of the selected
fluorocarbon compounds could be used to quantitatively analyse mixtures with the
possibility of further optimization of the method. The study was a representative study
indicating that the combination of MVA and spectroscopy can be used successfully in the
quantitative analysis of other fluorocarbon compound mixtures. / Thesis (M.Sc. (Chemistry))--North-West University, Potchefstroom Campus, 2012.
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Multivariate data analysis using spectroscopic data of fluorocarbon alcohol mixtures / Nothnagel, C.Nothnagel, Carien January 2012 (has links)
Pelchem, a commercial subsidiary of Necsa (South African Nuclear Energy Corporation), produces a range of commercial fluorocarbon products while driving research and development initiatives to support the fluorine product portfolio. One such initiative is to develop improved analytical techniques to analyse product composition during
development and to quality assure produce.
Generally the C–F type products produced by Necsa are in a solution of anhydrous HF, and cannot be directly analyzed with traditional techniques without derivatisation. A technique such as vibrational spectroscopy, that can analyze these products directly without further preparation, will have a distinct advantage. However, spectra of mixtures of similar compounds are complex and not suitable for traditional quantitative regression analysis.
Multivariate data analysis (MVA) can be used in such instances to exploit the complex nature of spectra to extract quantitative information on the composition of mixtures.
A selection of fluorocarbon alcohols was made to act as representatives for fluorocarbon compounds. Experimental design theory was used to create a calibration range of mixtures
of these compounds. Raman and infrared (NIR and ATR–IR) spectroscopy were used to
generate spectral data of the mixtures and this data was analyzed with MVA techniques by
the construction of regression and prediction models. Selected samples from the mixture
range were chosen to test the predictive ability of the models.
Analysis and regression models (PCR, PLS2 and PLS1) gave good model fits (R2 values larger
than 0.9). Raman spectroscopy was the most efficient technique and gave a high prediction
accuracy (at 10% accepted standard deviation), provided the minimum mass of a
component exceeded 16% of the total sample.
The infrared techniques also performed well in terms of fit and prediction. The NIR spectra were subjected to signal saturation as a result of using long path length sample cells. This was shown to be the main reason for the loss in efficiency of this technique compared to Raman and ATR–IR spectroscopy.
It was shown that multivariate data analysis of spectroscopic data of the selected
fluorocarbon compounds could be used to quantitatively analyse mixtures with the
possibility of further optimization of the method. The study was a representative study
indicating that the combination of MVA and spectroscopy can be used successfully in the
quantitative analysis of other fluorocarbon compound mixtures. / Thesis (M.Sc. (Chemistry))--North-West University, Potchefstroom Campus, 2012.
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Study of Diverse Chemical Problems by NMR and the Design of Novel Two Dimensional TechniquesMishra, Sandeep Kumar January 2017 (has links) (PDF)
The research work reported in this thesis is focused on the chiral analysis, quantification of enantiomeric composition, assignment of absolute configuration of molecules with chosen functional groups. The weak intra-molecular hydrogen bonding interactions are detected by exploiting several multinuclear and multi-dimensional techniques. Pulse sequences have been designed to manipulate the spin dynamics to derive specific information from the complex NMR spectra encountered in diverse situations. Broadly, the thesis can be classified in to three sections. The section I containing two chapters reports the introduction of new chiral auxiliaries and protocols developed for enantiomeric discrimination, measurement of enantiomeric contents, assignment of absolute configuration for molecules possessing specific functional groups using chiral solvating and derivatizing agents. The section II, reports NMR experimental evidence for the observation of the rare type of intramolecular hydrogen bonds involving organic fluorine in biologically important organic molecules, that are corroborated by extensive DFT based theoretical calculations. The section II also discusses the H/D exchange mechanism as a tool for quantification of HB strengths in organic building blocks. The section III reports the two different novel NMR methodologies designed for deriving information on the scalar interaction strengths in an orchestrated manner. The designed sequences are able to completely eradicate the axial peaks, prevents the evolution of unwanted couplings and also yields ultrahigh resolution in the direct dimension, permitting the accurate measurement of scalar couplings for a particular spin. The brief summary about each chapter is given below.
Chapter 1 provides a general introduction to one and two dimensional NMR spectroscopy. The pedagogical approach has been followed to discuss the conceptual understanding of spin physics and the NMR spectral parameters. The basic introduction to chirality, existing approaches in the literature for discrimination of enantiomers and the assignment of absolute
configuration of molecules with chosen functional groups and their limitations are briefly discussed. The brief introduction to hydrogen bond, experimental methods to obtain the qualitative information about the strengths of hydrogen bonds, and the theoretical approaches employed in the thesis to corroborate the NMR experimental findings have been provided. The mechanism of H/D exchange, the utilization of exchange rates to derive strengths of intra-molecular hydrogen bond in small molecules have also been discussed. This chapter builds the bridge for the rest of the chapters. Each of these topics are discussed at length in the corresponding chapters.
Part I: NMR Chiral Analysis: Novel Protocols
Chapter 2 discusses a simple mix and shake method for testing the enantiopurity of primary, secondary and tertiary chiral amines and their derivatives, amino alcohols. The protocol involves the in-situ formation of chiral ammonium borate salt from a mixture of C2 symmetric chiral BINOL, trialkoxyborane and chiral amines. The proposed concept has been convincingly demonstrated for the visualization of enantiomers of a large number of chiral and pro-chiral amines and amino alcohols. The protocol also permits the precise measurement of enantiomeric composition. The significant advantage of the protocol is that it can be performed directly in the NMR tube, without any physical purification. The structure of the borate complex responsible for the enantiodifferentiation of amines has also been established by employing multinuclear NMR techniques and DFT calculations. From DOSY and 11B NMR experiments it has been ascertained that there are only two possible complexes or entities which are responsible for differentiating enantiomers. From the combined utility of DFT calculations and the 11B NMR chemical shifts, the structure of the borate complex has been determined to be an amine-coordinated complex with the N atom of the amine.
Chapter 3 discusses a simple chiral derivatizing protocol involving the coupling of 2-formylphenylboronic acid and an optically pure [1,1-binaphthalene]-2,2-diamine for the rapid and accurate determination of the enantiopurity of hydroxy acids and their derivatives, possessing one or two optically active centres. It is established that this protocol is not only rapid method for discrimination of enantiomers but also highly effective for assigning the absolute configuration of various chiral hydroxy acids and their derivatives. The developed protocol involves the coupling of 2-formylphenylboronic acid with (R)-[1,1-binaphthalene]-2,2-diamine, and 2-formylphenylboronic acid with (S)-[1,1-binaphthalene]-2,2-diamine as chiral derivatizing agents. The absence of aliphatic peaks from the derivatizing agent, large chemical shift separation between the discriminated peaks of diastereomers, and the systematic change in the direction of displacement of peaks for an enantiomer in a particular diastereomeric complex, permitted the unambiguous assignment of absolute configuration.
Part II : Rare Type of Intramolecular Hydrogen Bonding
In chapter 4 The rare occurrence of intramolecular hydrogen bonds of the type N–H˖˖˖F–C, in the derivatives of imides and hydrazides in a low polarity solvent, is convincingly established by employing multi-dimensional and multinuclear solution state NMR experiments. The observation of 1hJFH, 2hJFN, and 2hJFF of significant strengths, where the spin polarization is transmitted through space among the interacting NMR active nuclei, provided strong and conclusive evidence for the existence of intra-molecular hydrogen bonds. Solvent induced perturbations and the variable temperature NMR experiments unambiguously supported the presence of intramolecular hydrogen bond. The two dimensional HOESY and 15N–1H HSQC experiments reveals the existence of multiple conformers in some of the investigated molecules. The 1H DOSY experimental results discarded any possibility of self or cross-dimerization of the molecules. The results of DFT based calculations, viz., Quantum Theory of Atoms In Molecules (QTAIM) and Non Covalent Interaction (NCI), are in close agreement with the NMR experimental findings.
In chapter 5 the rates of hydrogen/deuterium (H/D) exchange determined by 1H NMR spectra have been utilized to derive the strength of hydrogen bonds and to monitor the electronic effects in the site-specific halogen substituted Benz amides and anilines. The theoretical fitting of the time dependent variation in the integral areas of 1H NMR resonances to the first order decay function permitted the determination of H/D exchange rate constants (k) and their precise half-lives (t1/2) with high degree of reproducibility. The comparative study also permitted the determination of relative strengths of hydrogen bonds and the contribution from electronic effects on the H/D exchange rates.
Part III: Novel NMR Methodologies for the Precise Measurement of 1H-1H Couplings
Chapter 6 describes two novel NMR methodologies developed for the precise measurement of 1H-1H couplings. Poor chemical shift dispersion and the pairwise interaction among the entire coupled network of protons results in the severely complex and overcrowded one dimensional 1H NMR spectra, hampering both the resonance assignments and the accurate determination of nJHH. The available two-dimensional selective refocusing (SERF) based experiments suffer from the evolution of magnetization from uncoupled protons as intense uninformative axial peaks. This creates ambiguity in the identification of peaks belonging to the coupled partners of a selectively excited proton, hindering the extraction of their interaction strengths. This challenge has been circumvented by designing two novel experimental technique, cited as “Clean-G-SERF” and “PS-Clean-G-SERF”. The Clean-G-SERF technique completely eradicates the axial peaks and suppresses the evolution of unwanted couplings while retaining only the couplings to the selectively excited proton. The method permits the accurate determination of spin-spin couplings even from a complex proton NMR spectrum in an orchestrated manner. The PS-Clean-G-SERF technique has been designed for the complete elimination of axial peaks and undesired couplings, with a blend of ultra-high resolution achieved by real time broad band mononuclear decoupling has been discussed in this chapter. The spin dynamics involved in both these pulse sequences have been discussed. The diverse applications of both these novel experiments have been demonstrated.
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Biocatálise na produção de moléculas orgânicas: oxidorredutases de fungos marinhos para a síntese de álcoois quirais e lipase de Candida antarctica na produção de amidas fenólicas graxas / Biocatalysis in organic molecules production: synthesis of chiral alcohols by oxidoreductases from marine fungi and production of phenolic fatty amides by lipase from Candida antarcticaAna Maria Mouad 07 February 2014 (has links)
Neste trabalho, enzimas álcool-desidrogenases provenientes de fungos marinhos e a lipase imobilizada de Candida antarctica foram utilizadas para produção de compostos de interesse sintético e biológico. No capítulo 1, enzimas álcool-desidrogenases de fungos isolados da alga marinha Bostrychia radicans foram empregadas em reações de redução de cetonas fluoradas 1-5. Os fungos identificados como Botryosphaeria sp. CBMAI 1197, Eutypella sp. CBMAI 1196, Hidropisphaera sp. CBMAI 1194 e Xylaria sp. CBMAI 119 atuaram como biocatalisadores nestas reações levando à produção de álcoois com elevada pureza enantiomérica. O fungo Botryosphaeria sp. CBMAI 1197 destacou-se frente aos demais microrganismos, produzindo os álcoois (S)-2,2,2-trifluoro-1-feniletanol (1a) e (R)-1-(2,4,5-trifluorofenil)etanol (3a) com excelentes conversões (100% e 97%) e excessos enantioméricos (ee >99%). Este fungo também apresentou enzimas álcool-desidrogenases ativas frente a cetonas dicarboniladas 4-5, produzindo os álcoois 4,4,4-trifluoro-1-fenil-1,3-butanodiol (4a) e 4,4,4-trifluoro-1-(2-naftalenil)-1,3-butanodiol (5a) com 100% de conversão em ambos os casos e com purezas enantioméricas respectivas a 99% e 97%. Este foi o primeiro estudo realizado no Brasil com fluorocetonas dicarboniladas e com os fungos isolados da alga marinha Bostrychia radicans. No capítulo 2, a lipase comercial de Candida antarctica foi o biocatalisador empregado em reações de aminólise entre os ésteres linoleato de etila (1) e salicilato de etila (3), a amina graxa N-dodecilamina (2) e os aminoálcoois (4-9). A amina graxa N-dodecilamina (2) também foi utilizada em reações com o linoleato de etila (1), onde a lipase de Candida antarctica produziu a respectiva amida graxa 10 com rendimentos superiores a 95%. Os aminoálcoois foram selecionados para reações com o salicilato de etila (3), onde a lipase exibiu quimiosseletividade pelo grupo amino, produzindo predominantemente amidas fenólicas (12-19) com rendimentos entre 23-68%. A enzima CALB apresentou quimiosseletividade reduzida na reação com o 5-aminopentanol (6) onde os produtos amida 14 e éster 15 foram obtidos com rendimentos de 44 e 33%, respectivamente. O produto 2-hidroxi-N-(2-hidroxipropil)benzamida (19) foi obtido com rendimento superior a 90% a partir da reação catalisada pela lipase de Candida antarctica. Este produto foi selecionado como intermediário para a síntese de uma molécula hidrofóbica 21 que apresenta o éster oleato de etila em sua constituição. O produto 21 foi obtido com 75% de rendimento. As amidas fenólicas 12-21 produzidas neste trabalho são derivadas do ácido linoleico (ômega 6) e do ácido salicílico, os quais apresentam propriedades emolientes e antioxidantes. Estes compostos são interessantes para a formulação de produtos cosméticos de aplicação cutânea. Neste processo biotecnológico as reações foram conduzidas na ausência de solventes orgânicos, evitando o tratamento de solventes voláteis e a formação de subprodutos. Os compostos foram analisados por Cromatografia líquida de alta eficiência e caracterizados por RMN (1H, 13C), EMAR e IV. A aplicação de reações de biocatálise seja através de células microbianas ou de enzimas isoladas foram muito promissoras na síntese de compostos orgânicos de interesse como álcoois enantiomericamente puros ou amidas graxas. / In this work, alcohol dehydrogenase (ADHs) enzymes from marine fungi and immobilized lipase from Candida antarctica were employed for the production of compounds of biological and synthetic interest. In chapter 1, ADHs of fungi isolated from the marine alga Bostrychia radicans were used in reduction reactions of fluorinated ketones 1-5. The fungi identified as Botryosphaeria sp. CBMAI 1197, Eutypella sp. CBMAI 1196, Hidropisphaera sp. CBMAI 1194 and Xylaria sp. CBMAI 119 acted as biocatalysts in these reactions leading to production of alcohols with high enantiomeric purity. The fungus Botryosphaeria sp. CBMAI 1197 presented highlighted compared to other microorganisms producing the alcohols (S)-2,2,2-trifluoro-1-phenylethanol (1a) and (R) -1 - (2,4,5-trifluorophenyl) ethanol (3a) with excellent conversions (100% and 97%) and enantiomeric excesses (ee > 99%). This fungus also exhibited ADHs enzymes active with dicarbonylateds ketones, leading to the production of the alcohols 4,4,4-trifluoro-1-phenylbutane-1,3-diol (4a) and 4,4,4-trifluoro-1-(naphthalen-2-yl)butane-1,3-diol -1,3-butanediol (5a) with conversions of 100% in both cases and enantiomeric excess of 99%-97%, respectively. This was the first study conducted with dicarbonilated fluoroketones 4-5 and with fungi isolated from the marine alga Bostrychia radicans in Brazil. In chapter 2, immobilized lipase from Candida antarctica was used as biocatalyst in the aminolysis reaction between esters of ethyl linoleate (1) and ethyl salicylate (3), the fatty amine N-dodecylamine (2) and the aminoalcohols (4-8). Six aminoalcohols were selected for reactions with ethyl salicylate (3), where the lipase exhibited chemoselectivity by the amino groups, producing predominantly phenolic amides in yields of 23-63%. The CALB exhibited um reduction in chemoselectivity in the reaction with 5-aminopentanol (6) where the amide 14 and ester 15 products were obtained with 44% and 33% yields. The product 2-hydroxy-N-(2-hydroxypropyl) benzamide (19) was obtained in yield greater than 90% from the reaction catalyzed by lipase from Candida antarctica. This product was selected as reagente for the synthesis of a hydrophobic molecule 21 presenting ester ethyl oleate in its constitution. The product 21 was obtained in 75% yield. The phenolic amides 12-21 produced in this work are derived from linoleic acid (omega 6) and salicylic acid, which presents emollient and antioxidants properties. These compounds are interesting for the formulation of cosmetic products for skin application. In this biotechnological process, the reactions were carried out under solvent-free conditions and vacum, avoiding the treatment of volatile solvents and by-product formation. The compounds were analyzed by high performance liquid chromatography and characterized by NMR (1H, 13C), IR and HRMS. Applying biocatalysis reactions, either through microbial cells or isolated enzymes were promising for the synthesis of organic compounds such as enantiomerically pure alcohols and fatty phenolic amides.
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