Diversos estudos apontam uma forte influência do ambiente terrestre sobre os corpos dágua nele inseridos. No caso de riachos de cabeceira esta relação não se resume a variáveis químicas e físicas, mas também está ligada diretamente ao que chamamos de metabolismo do riacho, regulando o aporte direto de nutrientes em forma de folhiço e material particulado e a produtividade interna, através de incidência de luz. Estes são fatores que estão intrinsecamente ligados a manutenção deste metabolismo e por conseqüência da biodiversidade que existe nestes riachos. Este estudo, através da técnica isotópica do \'dela\'13C e \'delta\'15N e índices ecológicos (riqueza, abundância, diversidade, EPT e EPTC) comparou riachos de Mata Atlântica inseridos em ambientes com diferentes características. Primeiramente com relação à altitude, foram comparados riachos inseridos em matriz de Floresta Ombrófila Densa de Terras Baixas (5 a 50 m), sopé da Serra do Mar e de Floresta Ombrófila Densa Montana (500 a 1.200 m), topo da serra. E em um segundo momento, riachos em diferentes usos do solo, inseridos em matriz de floresta, eucalipto e pastagem. Foram encontradas diferenças não só relacionadas aos índices ecológicos, mas principalmente com relação as variáveis isotópicas, que apontaram mudanças nos padrões alimentares. Os riachos de terras baixas apresentaram um alto consumo de perifiton que foi substituído pelo consumo de material particulado nos riachos de altitude. O consumo de folhiço foi importante em ambas as altitudes e se manteve estável temporalmente. No caso de uso do solo, os riachos inseridos em plantações de eucalipto, seguiram um padrão muito próximo aos riachos florestados. Os padrões encontrados nos riachos de pastagem diferiram de ambas as fisionomias florestais apresentando um baixo consumo de folhiço e influência de plantas C4 na dieta de alguns invertebrados, além de uma grande variação interna explicada pela composição do folhiço e material particulado encontrados nestes riachos. / Several studies show a strong influence of terrestrial environment on streams contained therein. On headwater streams that influence is not just related to chemical and physical variables, but also is directly linked to what the stream metabolism, regulating the direct input of nutrients in the form of litter and particulate matter and internal productivity through light incidence. Factors that are inextricably linked to maintenance of these metabolism and consequently to the biodiversity that exists in these streams. This study, using the isotopic technique of \'delta\'13C and \'delta\'15N and ecological indexes (richness, abundance, diversity, EPT and EPTC) compared Atlantic Forest streams inserted in environments with different characteristics. We compared streams inserted in Tropical Rain Forest of lowlands (50-50 m), foothills of the Serra do Mar and Mountain Tropical Rain Forest (500-1200 m) upland. Also compared streams in different land uses, inserted into a matrix of forest, grassland and eucalyptus. Differences found on isotopic variables showed changes in dietary patterns. The lowland streams showed a high consumption of periphyton that was replaced by the consumption of particulate matter in the upland streams. Consumption of leaf litter was important in both altitudes and remained stable on both seasons. For land use comparison, streams inserted in eucalyptus plantations, followed a pattern similar to forested streams. The patterns found in pasture streams differed from both forest formations, showing a low consumption of leaf litter and influence of C4 plants in the diet of some invertebrates, as well as a large internal variation explained by the composition of litter and particulate matter collected in these streams.

Ce premier travail de thèse sur les plantes non vasculaires de La Réunion visait à mesurer et à expliquer la diversité des communautés de bryophytes à différentes échelles de perception. Les résultats ont confirmé que les bryophytes constituent un compartiment majeur de la biodiversité à La Réunion représentant actuellement 753 espèces. Cette étude en trois ans a mis en évidence la présence d'environ 100 taxons nouveaux pour l'île et une espèce nouvelle pour la Science ce qui souligne le besoin d'échantillonnage d'un tel groupe biologique. L'utilisation du site naturel expérimental que sont les coulées de lave du Piton de la Fournaise a permis d'étudier pour la première fois la dynamique de la végétation des bryophytes et de mettre en évidence une forte diversité spécifique le long d'une chronoséquence de six coulées de laves à basse altitude (~ 304 ans) et d'un gradient altitudinal (250 - 850 m) sur la coulée 1986. Cette diversité est principalement représentée par les hépatiques, plus particulièrement la famille des Lejeuneaceae. L'analyse de la distribution spatiale des bryophytes à une échelle fine le long de ces gradients a montré un turn over des microhabitats et de sa bryoflore associée en fonction de l'age des coulées et de l'altitude, et du rôle prédominant de la présence et la disponibilité de ces microhabitats dans la structuration des communautés bryophytiques. Vingt six groupements de bryophytes ont été caractérisés pour ces coulées. Le patron biogéographique des espèces recensées sur ces coulées de laves reflète principalement une origine africaine (66.5 % des espèces) suivi par des espèces à plus large distribution (pantropicale, paléotropicale, subcosmopolite et disjoncte entre l'Amérique et l'Afrique). A plus large échelle, cette étude s'inscrit dans un programme de recherches visant à obtenir une meilleure connaissance de la diversité bryophytique et de l'écologie des espèces pour la zone ouest de l'océan Indien (Réunion, Comores, Seychelles, Maurice, Madagascar) en vue d'une meilleure stratégie de conservation et de gestion du patrimoine naturel de ce hot spot de biodiversité.

Altitudinal gradients offer attractive opportunities for studies of population differentiation in response to environmental heterogeneity. In this thesis, I examined population differentiation along altitudinal gradients by combining common-garden experiments with field studies and experiments in alpine, subalpine and boreal populations of the perennial herb Solidago virgaurea. More specifically, I determined whether leaf physiology in terms of nitrogen concentration and resorption, flowering phenology, flower production and reproductive effort vary along altitudinal gradients. Nitrogen concentration in green leaves were higher in alpine than in subalpine and boreal populations. These differences persisted when plants were grown from seeds in a common-garden experiment at two sites, suggesting that the differences have a genetic component. There was mixed support for a trade-off between maximized carbon gain through the maintenance of high nitrogen concentration, and minimized nitrogen loss through high resorption. In their natural habitats alpine populations began flowering later than subalpine populations, but this difference was reversed when plants were grown in a common environment. This suggests that genetic differences among populations counteract environmental effects and reduce phenotypic variation in flowering time among populations. Flowering time thus shows countergradient genetic variation in S. virgaurea. In a common-garden experiment, boreal populations produced more flowers and had a higher reproductive effort than subalpine and alpine populations indicating habitat-specific genetic differences in reproductive allocation. In a field study, which included three populations, seed set was close to zero in the alpine population, intermediate in the subalpine population, and high in the boreal population. Experimental flower removal showed that seed production was associated with a considerable cost in terms of reduced flowering propensity the following year, but did not support the hypothesis that a large floral display is important for pollination success.

La forte variation climatique, notamment de la température qui est associée à la distribution altitudinale de certains peuplements d'arbres forestiers peut induire des pressions de sélection divergentes favorisant l'expression de phénotypes différents en fonction de l'altitude. Cette thèse a pour objectif de déterminer si des adaptations locales existent et peuvent être mises en évidence dans un peuplement de mélèze (Larix decidua Mill.) distribué le long d'un gradient altitudinal situé dans les Alpes françaises, à proximité de Briançon. Quatre placettes d'environ 200 mélèzes ont été délimitées à 2300 m, 2000 m, 1700 m et 1350 m d'altitude le long de ce gradient. Une variabilité phénotypique significative a été observée entre ces niveaux altitudinaux pour la plupart des caractères étudiés : circonférence, hauteur de l'arbre, pourcentage d'aubier ainsi que pour toutes les variables microdensitométriques de cernes sauf une (la largeur de cerne). Une analyse de génétique des populations utilisant des marqueurs microsatellites a mis en évidence une faible influence de la dérive génétique sur la diversité génétique et une forte intensité de flux de gènes entre les différents niveaux altitudinaux étudiés. La différenciation génétique inter-altitudes a été estimée à l'aide d'une approche in-situ basée sur les données phénotypiques seules (PST) et comparée à la différenciation observée à l'aide des marqueurs microsatellites (FST). Cette analyse indique que l'hypothèse d'adaptations locales avec l'altitude peut être raisonnablement avancée pour les caractères de hauteur, circonférence, pourcentage d'aubier et densité du bois initial. Au contraire, l'adaptation locale n'apparait pas comme une hypothèse acceptable pour les caractères de largeur de cerne, surface de cerne, largeur du bois final et densité du bois final.

The thesis describes the community composition, population structure and dispersal in a lowland rainforest community, extended to changes in butterfly composition along an altitudinal gradient. It tests the feasibility of mark-release-recapture studies in the understories of lowland primary forests, describes dispersal in relation to host plants and compares dispersal and demographic parameters with temperate species. Focusing on primary as well as secondary sites the thesis analyzes species richness and similarity between sites along an altitudinal gradient. It also tests ecological correlates for endemism in New Guinea butterflies, particularly their geographic and altitudinal range, as well as their optimum altitude.

Diversos estudos apontam uma forte influência do ambiente terrestre sobre os corpos dágua nele inseridos. No caso de riachos de cabeceira esta relação não se resume a variáveis químicas e físicas, mas também está ligada diretamente ao que chamamos de metabolismo do riacho, regulando o aporte direto de nutrientes em forma de folhiço e material particulado e a produtividade interna, através de incidência de luz. Estes são fatores que estão intrinsecamente ligados a manutenção deste metabolismo e por conseqüência da biodiversidade que existe nestes riachos. Este estudo, através da técnica isotópica do \'dela\'13C e \'delta\'15N e índices ecológicos (riqueza, abundância, diversidade, EPT e EPTC) comparou riachos de Mata Atlântica inseridos em ambientes com diferentes características. Primeiramente com relação à altitude, foram comparados riachos inseridos em matriz de Floresta Ombrófila Densa de Terras Baixas (5 a 50 m), sopé da Serra do Mar e de Floresta Ombrófila Densa Montana (500 a 1.200 m), topo da serra. E em um segundo momento, riachos em diferentes usos do solo, inseridos em matriz de floresta, eucalipto e pastagem. Foram encontradas diferenças não só relacionadas aos índices ecológicos, mas principalmente com relação as variáveis isotópicas, que apontaram mudanças nos padrões alimentares. Os riachos de terras baixas apresentaram um alto consumo de perifiton que foi substituído pelo consumo de material particulado nos riachos de altitude. O consumo de folhiço foi importante em ambas as altitudes e se manteve estável temporalmente. No caso de uso do solo, os riachos inseridos em plantações de eucalipto, seguiram um padrão muito próximo aos riachos florestados. Os padrões encontrados nos riachos de pastagem diferiram de ambas as fisionomias florestais apresentando um baixo consumo de folhiço e influência de plantas C4 na dieta de alguns invertebrados, além de uma grande variação interna explicada pela composição do folhiço e material particulado encontrados nestes riachos. / Several studies show a strong influence of terrestrial environment on streams contained therein. On headwater streams that influence is not just related to chemical and physical variables, but also is directly linked to what the stream metabolism, regulating the direct input of nutrients in the form of litter and particulate matter and internal productivity through light incidence. Factors that are inextricably linked to maintenance of these metabolism and consequently to the biodiversity that exists in these streams. This study, using the isotopic technique of \'delta\'13C and \'delta\'15N and ecological indexes (richness, abundance, diversity, EPT and EPTC) compared Atlantic Forest streams inserted in environments with different characteristics. We compared streams inserted in Tropical Rain Forest of lowlands (50-50 m), foothills of the Serra do Mar and Mountain Tropical Rain Forest (500-1200 m) upland. Also compared streams in different land uses, inserted into a matrix of forest, grassland and eucalyptus. Differences found on isotopic variables showed changes in dietary patterns. The lowland streams showed a high consumption of periphyton that was replaced by the consumption of particulate matter in the upland streams. Consumption of leaf litter was important in both altitudes and remained stable on both seasons. For land use comparison, streams inserted in eucalyptus plantations, followed a pattern similar to forested streams. The patterns found in pasture streams differed from both forest formations, showing a low consumption of leaf litter and influence of C4 plants in the diet of some invertebrates, as well as a large internal variation explained by the composition of litter and particulate matter collected in these streams.

Tropical areas are usually expected to be a stable environment when compared to the temperate zone. This is true especially for the temperature and the day length which ensure relatively stable food supply. As a consequence, tropical birds, especially rainforest species, are thought to breed all year round. But even in the tropics, breeding can be synchronized with some fluctuating environmental conditions such as rainfall and differences in food supply and breeding and singing activity may occur seasonally in tropical rainforest as well. But the data for testing these assumptions are still scarce. In the first part of my thesis, I focused on the seasonality in breeding activity in various feeding guilds of birds inhabiting tropical rainforest on Mount Cameroon in three different elevations - lowland, submontane and montane forest. The second part focuses on the seasonality in singing activity at both population and species level. I also compared singing activity with the data on breeding activity. The extent of breeding activity differed between feeding guilds and I showed preferences of different guilds to different seasons for breeding. Most of the groups, especially insectivorous birds, bred in the beginning of the dry season, except of species searching for invertebrates on the ground. These...

La phyllosphère est l’habitat fourni par la partie foliaire des plantes. De nombreuses espèces microbiennes - pathogènes, saprophytes ou mutualistes des plantes - peuplent cet environnement. Ce compartiment microbien influence donc la dynamique et la structure des communautés végétales. L’objectif principal de cette thèse était d’étudier les effets potentiels du changement climatique sur la structure des assemblages fongiques de la phyllosphère des arbres forestiers, et sur la niche écologique des espèces fongiques pathogènes des arbres forestiers. Nous avons pour cela utilisé deux approches, i) l’étude de gradients altitudinaux et ii) la construction de modèles de niche bioclimatique.Les assemblages fongiques de la phyllosphère des arbres forestiers étant encore peu connus, nous avons dans un premier temps décrit leur diversité et quantifié leur variabilité spatiale à l’échelle d’une parcelle forestière.Nos résultats montrent que la phyllosphère d’un arbre forestier abrite quelques centaines d’espèces fongiques, avec quelques espèces dominantes et beaucoup d’espèces rares. Les facteurs structurant ces assemblages incluent à la fois des facteurs abiotiques et biotiques : la température apparaît comme la variable climatique la plus explicative le long d’un gradient altitudinal ; à l’échelle d’une parcelle, la proximité génétique entre arbres est plus déterminante que leur distance géographique.L’analyse des modèles de niche des champignons pathogènes forestiers à l’échelle de la France met en évidence des limitations climatiques, les pluies estivales étant une variable explicative importante.Toutefois, plusieurs espèces introduites occupent déjà la plus grande part de la distribution de leur hôte,sans limitation apparente par le climat. Les effets du changement climatique sur la plupart des pathogènes s’exerceront d’abord indirectement par des effets dépressifs très importants sur l’abondance de leurs arbres-hôtes. Seuls les pathogènes adaptés au biotope méditerranéen verraient leur impact s’accroitre. / Phyllosphere is the habitat provided by the leaves of living plants. Many microbial species -pathogens, saprophytes or mutualists of plants - inhabit this environment. These microbes therefore influence the dynamics and structure of plant communities. The main objective was to study the potential effects of climate change on the structure of phyllosphere fungal assemblages, and on the ecological niche of pathogenic fungal species of forest trees. We used two approaches, i) the study of altitudinal gradients and ii) the construction of bioclimatic niche models. Since phyllosphere fungal assemblages of forest trees are still poorly known, we first described their diversity and quantified their spatial variability at the scale of a forest stand.Our results show that the phyllosphere of a forest tree houses hundreds of fungal species, with few dominant species and many rare species. Factors structuring these assemblages include both abiotic and biotic factors: the temperature appears as the most explanatory variable along an elevation algradient. At the scale of a forest stand, the genetic proximity between trees is more important than the geographic distance. Analysis of the bioclimatic niche models of pathogenic fungi forest at the French scale highlights some climatic limitations, and the summer rainfall is an important explanatory variable. However, many introduced species already occupy the distribution of their host, without apparent climatic limitation. The effects of climate change on most pathogens will be exercised indirectly by very important depressive effects on the abundance of their host trees. Only pathogens adapted to the Mediterranean biotope would increase their impact.

The aim of this thesis is to describe the changes of bird species diversity along elevation gradient on six mounts in Cameroon and nearby Bioko island. The results of the analyses confirm most of the defined hypotheses, especially they show that species diversity declines with altitude and rises with area. Cluster analysis shows the similarity of individual mountains in particular altitude zones. Despite the original hypothesis, mount Cameroon is found to be most similar to mount Kupé, although high mountain assemblages of mount Cameroon and Bioko island are very alike as well. The absolutely highest diversity was detected on mount Cameroon and mount Kupé, but above 2100 m above sea level mounts Oku and Manenguba are the most diverse. The results of this thesis contribute to a clearer notion about factors influencing species diversity; however, more thorough data (particularly from mount Nlonako) and data extension for e.g. bird abundance would enrich the study and it would enable us to perform more detailed diversity analysis, especially an analysis of competition relationship among species. Key words Species diversity, Cameroon, bird assemblages, elevational gradient

The aim of this thesis is to describe the changes of bird species diversity along elevation gradient on six mounts in Cameroon and nearby Bioko island. The results of the analyses confirm most of the defined hypotheses, especially they show that species diversity declines with altitude and rises with area. The absolutely highest diversity was detected on mount Kupé and mount Cameroon, but above 2100 m above sea level mounts Oku and Manenguba are the most diverse. Other analysis showed that the biggest changes in beta diversity of bird assemblages along altitudinal gradients are on the lowest elevational belts which are on the edges of a degraded habitats and continuous undisturbed forests. Other important changes in bird assemblages happen around altitude 1200 m, where the assemblages of lowland rainforest change to assemblages of mountain forest. Analyses of affinity of bird species to forest habitat showed that the most affined assemblages to the forest are those found on mounts Kupé and Rata. On the other hand bird assemblages on mounts Manenguba and Oku are the one of least affined to the forest biotope. Analysis of habitat generalism and specialism did not show the expected outcome and for clearer results the design of analysis needs to be improved. The results of this thesis contribute to a...