Philosophiae Doctor - PhD / The HIV-1 envelope (Env) glycoprotein is the primary target of the humoral immune response and a critical vaccine candidate. However, Env is densely glycosylated and thereby substantially protected from neutralisation. Despite the importance of the HIV- 1 Env glycans, limited computational analyses have been employed to analyse these glycans. Here, the Env glycans of two HIV-1 wild-type subtype C isolates are examined, in detail, using computational approaches. These particular strains were used since in vitro data showed that the removal of a single glycan had a substantially different impact on the neutralisation sensitivity of the two strains. Molecular dynamics simulations, and the subsequent analyses, were carried out on the computationally determined, fully glycosylated, Env structures of these two wild-type strains and their N301A mutant counterparts. Detailed comparison of the molecular dynamics simulations demonstrated that unique glycan dynamics and conformations emerged and that, despite shared HXB2 reference sequence positions, the glycans adopted distinct conformations specific to each wild-type model. Furthermore, different changes in conformations were observed for each wild-type model compared to its N301A mutant counterpart and, interestingly, these N301A mutant model-specific glycan conformations were directly associated with the protein residues ultimately found to be exposed, which may explain the varied resistance to neutralising antibodies observed, in vitro, for the two N301A mutant strains.

Sand flies serve as the vectors of leishmaniasis and their saliva was shown to affect the outcome of Leishmania infection by immunomodulation of the host. On the other hand, sand fly saliva contains a large scale of farmacologically active proteins that are strongly immunogenous for bitten hosts and specific anti-saliva immunity initiated by repeated sand fly feeding provides protection against Leishmania infection. Specific cell-mediated immunity was shown to be the core of the protectivity; however, our data suggests that the protective immunity has certain limitations. In mice bitten by sand flies for prolonged periods, we observed the desenzitization in term of abrogation of the protective immunity. Thus, we can speculate that the protective effect of immunity is linked solely with the short-term exposure. Nevertheless, our experiments showed that this aspect is also conditioned by the immediate infection after the protective short-term immunization. Taken together, it seems that these limitations may explain the circulation of leishmaniasis in endemic areas, even though humans and animals are frequently immunized by bites of uninfected sand flies. Repeated sand fly feeding on various hosts also promotes production of anti-saliva antibodies that reflect the intensity of exposure. We...

A lipoproteína de baixa densidade eletronegativa (LDL-) é um importante antígeno envolvido na patogênese da aterosclerose. A LDL(-) provoca resposta inflamatória e imunológica, levando à produção de autoanticorpos anti-LDL(-) e a formação subsequente de imunocomplexos (IC-LDL-), os quais também contribuem com o processo aterosclerótico. Diante disso, este trabalho teve como objetivo o desenvolvimento e validação de imunoensaios para quantificação plasmática de LDL(-), anti-LDL(-) e IC-LDL(-), assim como o desenvolvimento de ferramentas aplicáveis em um biossensor para LDL(-). Após a padronização de cada ELISA, foram avaliadas as características de desempenho dos métodos: limites de detecção (LD) e quantificação (LQ), precisão intra e inter-ensaios, exatidão, linearidade de diluição e interferentes. Os LD e LQ do ELISA para LDL(-) foram 0,423 mg/L e 0,517 mg/L de LDL(-), respectivamente. As concentrações plasmáticas de LDL(-) apresentaram linearidade quando os plasmas foram diluídos 1:1000, 1:2000, 1:4000 e 1:8000. Os LD e LQ do ELISA para anti-LDL(-) foram 0,0028 mg/L e 0,0032 mg/L de anti-LDL(-), respectivamente. Os plasmas apresentaram linearidade na diluição quando diluídos 1:100, 1:200, 1:400 e 1:800. Os LD e LQ do ELISA para IC-LDL(-) foram 0,023 g/L e 0,034 g/L de IC-LDL(-), respectivamente. Os plasmas apresentaram linearidade quando diluídos 1:12,5, 1:25, 1:50 e 1:100. Os três ELISAs apresentaram precisão intra e inter-ensaios e recuperação dentro dos limites requeridos para imunoensaios. Para o desenvolvimento de um biossensor para LDL(-), uma proteína recombinante, denominada GFP5-scFv, foi expressa em bactérias Escherichia coli da linhagem BL21(DE3). Para obtenção dessa proteína foi realizada a inserção da sequência de DNA de um fragmento variável de cadeia única (scFv) anti-LDL(-) em um vetor bacteriano com a sequência de DNA da proteína verde fluorescente (GFP5). Dessa forma, a GFP5-scFv é fluorescente e tem afinidade pela LDL(-). Também foram sintetizadas nanopartículas de ouro, as quais podem ser eficientemente utilizadas na supressão da emissão da fluorescência de GFP5-scFv. Portanto, os imunoensaios validados e os aplicativos desenvolvidos para o biossensor são ferramentas que tem potencial para serem utilizadas na avaliação da patogênese da aterosclerose. / The electronegative low-density lipoprotein (LDL) is an important antigen involved in the pathogenesis of atherosclerosis. The LDL(-) causes inflammatory and immune response, leading to production of autoantibodies anti-LDL(-) and the subsequent formation of immune complexes (IC-LDL), which also contribute to the atherosclerotic process. Thus, this study aimed to develop and validate immunoassays for quantification of plasma LDL(-), anti-LDL(-) and LDL-IC(-) as well as developing tools applicable to a biosensor for LDL(-). After the standardization of each ELISA, were evaluated the performance characteristics of methods: limits of detection (LD) and quantification (LQ), intra- and inter-assays precision, accuracy, linearity of dilution and interferences. The LD and LQ of LDL(-) ELISA were 0.423 mg/L and 0.517 mg/L of LDL(-), respectively. Plasmas showed linearity when diluted 1:1000, 1:2000, 1:4000 and 1:8000. The LD and LQ of anti-LDL(-) ELISA were 0.0028 mg/L and 0.0032 mg/L of anti-LDL(-), respectively. Plasmas showed linearity when diluted 1:100, 1:200, 1:400 and 1:800. The LD and LQ of IC-LDL(-) ELISA were 0.023 g/L and 0.034 g/L of LDL-IC(-), respectively. Plasma showed linearity when diluted 1:12.5, 1:25, 1:50 and 1:100. The three ELISAs showed good intra- and inter-assays precision and recovery within the limits required for immunoassays. To develop a biosensor for LDL(-), a recombinant protein, called GFP5-scFv was expressed in Escherichia coli BL21(DE3) strain. The obtainment of this protein was performed inserting the DNA sequence of an anti-LDL(-) single chain variable fragment (scFv) in a bacterial vector with a DNA sequence of green fluorescent protein (GFP5). Thus, the scFv-GFP5 is fluorescent and has affinity for LDL(-). Were also synthesized gold nanoparticles, which can be efficiently used for quenching the fluorescence emission of GFP5-scFv. Therefore, immunoassays validated and developed applications for the biosensor are tools that have potential to be used in evaluating the pathogenesis of atherosclerosis.

Les anticorps monoclonaux (Acm) ont révolutionné la prise en charge de nombreuses maladies inflammatoires chroniques. L’administration par voie systémique des Acm ne semble pas optimale pour le traitement des maladies respiratoires. Ce travail a eu pour objectif d’étudier le comportement des anticorps après leur administration par voie pulmonaire. Le cetuximab, un anticorps anti-EGFR, a été étudié dans un modèle murin de tumeur pulmonaire bioluminescente et chez le macaque. Le G6-31, un anticorps anti-VEGF, a été étudié dans un modèle murin transgénique de tumeur pulmonaire spontanée. Les résultats montrent que les anticorps administrés par voie pulmonaire sont efficaces, persistent durablement dans le poumon et passent peu dans le compartiment sanguin. L’administration par voie pulmonaire d’Acm pourrait donc augmenter l’index thérapeutique de ces médicaments. Ces résultats ouvrent la voie pour l’administration par voie pulmonaire d’Acm dans les pathologies respiratoires en général. / Monoclonal antibodies (mAbs) modified profoundly the treatment of many chronic inflammatory diseases. Systemic administration of mAbs does not seem to be optimal for the treatment of respiratory diseases. This work aims at studying the fate of mAbs after pulmonary delivery. The lung delivery of Cetuximab, an anti-EGFR antibody, was assessed in an orthotopic mouse model of lung tumor and in macaques. G6-31, an anti-VEGF antibody, was studied in a transgenic murine model of spontaneous lung tumors. The results showed that mAbs, after pulmonary delivery, were pharmacologically effective, persisted durably into the lung and passed slowly into the bloodstream. Pulmonary delivery of mAbs might increase the therapeutic index of these drugs. Altogether, these results open the way for the pulmonary administration of mAbs in respiratory disorders

As modificações das lipoproteínas de baixa densidade (LDL) são uma etapa essencial na aterogênese pois acarretam a geração de LDL eletronegativa [LDL(-)] que apresenta propriedades quimiotática, citotóxica, imunogênica e pró-inflamatória. O objetivo deste trabalho foi a produção de hibridomas secretores de anticorpos monoclonais anti-LDL(-), a clonagem dos genes que codificam para as cadeias variáveis destes anticorpos, e sua expressão como fragmentos de anticorpo de cadeia única (scFv). A LDL(-) isolada de plasma humano foi utilizada como antígeno para imunização de camundongos BALB/c. Após triagem dos clones, dois anticorpos monoclonais foram obtidos baseados em sua reatividade pela LDL( -) e não pela LDL nativa: 1A3H2 (1A3) e 2C7D5F10 (2C7). Os cDNAs codificante para a cadeia pesada (VH) e cadeia leve (VL), de ambos os anticorpos, foram obtidos por meio de RT-PCR utilizando bibliotecas de oligonucleotídeos que reconhecem todas os genes de domínios variáveis das famílias de VH e VL murinas. Os genes da VH e VL obtidos foram clonados no vetor pGEM-T Easy (Promega®) e suas seqüências determinadas. A VH do anti-LDL(-) 1A3 pertence família J558.84 e fragmento gênico JH2, enquanto sua VL pertence a família 8.24 e fragmento gênico Jk5. A VH do anti¬-LDL(-) 2C7 pertence a família Vmu 3.2 (J558) e fragmento gênico JH4, enquanto sua VL pertence a família 8.24 e fragmento gênico Jk5. A partir disso, oligonucleotídeos sintéticos foram sintetizados a fim de clonar estes segmentos gênicos no vetor pPlgLE de expressão em Pichia pastoris. Foram realizadas três construções: o scFv 1A3, scFV 2C7 e um scFv híbrido (VH do 1A3 e VL do 2C7). Das três construções obtidas, conseguimos expressar o scFv do anti-LDL 2C7D5F10 que demonstrou ser capaz de reconhecer o antígeno. A proteína recombinante expressa tem grande potencial de ser usada no diagnóstico clínico incluindo imunoensaios in vitro e como reagentes para exames que envolvam a obtenção e análise de imagens. / Oxidative modification of low-density lipoproteins (LDL) is an essential step in atherogenesis, generating electronegative LDL [LDL(-)], which has chemotactic cytotoxic, immunogenic and proinflammatory properties. The aim of this study was the generation of anti-LDL(-) mAbs, the cloning of the genes that code for their variable domains and their expression as single-chain Fv (scFv). LDL(-) was isolated from human blood plasma and used as an antigen for immunization of Balb/c mice. Upon screening, two different mAbs were selected based on their ability to recognize LDL(-) and not native LDL: 1A3H2 (1A3) e 2C705F10 (2C7). The cDNAs that code for VH and VL were obtained by RT-PCR using specific immunoglobulin primer libraries wich recognize all VH and VL murine families. The VH and VL genes were cloned in pGEM-T Easy (Promega®) and sequenced. The anti-LDL(-) 1A3 uses a VH segment from J558.84 and a JH2 segment, while VL uses a 8.24/Jk5 segments. The anti-LDL(-) 2C7 uses a VH segment from Vmu 3.2 (J558) and a JH4 segment, while VL uses a 8.24/Jk5 segments. Oligonucleotides were synthetized and those gene segments were cloned in pPIGLE a Pichia pastoris immunoglobulin expression vector. We obtained three scFv constructions: scFV 1A3, scFv 2C7 and a husk hybrid, harboring 1A3 VH and 2C7 VL. Among those, we expressed the scFv anti¬-LDL(-) 2C7 that are able to recognize the antigen. The recombinant protein has a great potential for clinicai diagnostic applications, including in vitro immunoassays and as imaging reagents.

Evidências epidemiológica e imunológica sugerem que o desenvolvimento da imunidade natural contra doença meningocócica pode está associado com a reação cruzada de antígenos em comuns com Neisseria meningitidis e outras bactérias comensais, como Neisseria lactamica. O Objetivo deste trabalho foi de investigar a imunogenicidade de antígenos de vesículas de membrana externa (OMV) de N. lactamica, com ou sem a presença de Bordetella pertussis (BP), utilizada como adjuvante. Grupos de camundongos neonatos da linhagem BALB/c foram imunizados com antígenos de N. lactamica. Os resultados de nossos estudos mostraram o predomínio de altos títulos de anticorpos dos isótipos IgG e IgM com alta e intermediária avidez, depois das imunizações pela via (i.n) com N. lactamica. A análise do soro por immunoblot mostrou proteínas com reatividade cruzada entre as espécies do gênero Neisseria e os anticorpos monoclonais utilizados neste trabalho. Estes resultados sugerem que antígenos de N. lactamica e N. meningititdis em comum, possam ser importantes na imunidade natural contra doença meningocócica, e no desenvolvimento de vacina. / Immunological and epidemiological evidences suggest that the development of natural immunity to meningogoccal disease may be associated with crossreactive antigens together with Neisseria meningitidis and other commensal bacteria, like Neisseria lactamica. The present study aimed to investigate the immunogenicity of antigens of outer membrane vesicles (OMV) of N. lactamica with or without the presence of Bordetella pertussis (BP) used as an adjuvant. Groups of neonate BALB/c mice were immunized intranasally antigens of N. lactamica. The results of our studies showed the predominance of high titers of antibodies of IgG and IgM isotipes with high and intermediate avidity after intranasal immunization with N. lactamica. Immunoblot analysis of serum showed cross-reactivity proteins between the species of the gender Neisseria and the monoclonal antibodies used in this study. These results suggest that antigens of N. lactamica and N. meningitidis in common may be important in natural immunity against meningogoccal disease and in the development of vaccine.

O transplante de órgãos é hoje uma opção de tratamento de várias doenças terminais. Apesar de todos os progressos no campo do transplante, o principal problema enfrentado ainda é a rejeição. As principais moléculas responsáveis pela resposta alogeneica e subsequente rejeição ao enxerto, são os antígenos leucocitários humanos (HLA, do inglês Human Leucocyte Antigens). Porém, existem evidências que anticorpos dirigidos a antígenos não-HLA estão associados com rejeição de transplantes. Neste estudo, foi investigada a presença de anticorpos anti-célula endotelial (AACE) em 11 pacientes que perderam seus rins transplantados devido à rejeição humoral irreversível e em 2 com perda por trombose de veia renal. A ausência de anticorpos anti-HLA contra o doador foi verificada antes do transplante, da rejeição e antes e depois da transplantectomia, através da realização de provas cruzadas usando as técnicas mais sensíveis. Anticorpos não-HLA presentes em nove eluatos reagiram com EAHy.926. Eluatos positivos e negativos contra linhagem EAHy.926 foram testados contra cortes histológicos de 6 rins sadios para detecção de quais estruturas renais são reconhecidas por esses anticorpos. A reação foi avaliada pelo método de imunofluorescência indireta. Dos 13 eluatos testados, 4 (isotipo IgG) e 5 (isotipo IgM) reagiram com forte fluorescência nos glomérulos e endotélio arterial, mas não foi verificada reação na cápsula de Bowman e no epitélio tubular. Não foi observado polimorfismo na reatividade dos eluatos. Em onclusão, verificamos que os anticorpos não-HLA têm um importante papel na rejeição humoral. Estes estão reconhecendo antígenos de um sistema provavelmente não-polimórfico nas células de endoteliais presentes, principalmente, nos capilares glomerulares. / The transplant of organs is today an option of treatment to several terminal diseases. In spite of all the progress in the field of the transplants, the rejection remains a problem to be solved. The main target molecules for the allogenic response and subsequent allograft rejection are the human leukocyte antigens (HLA). However, there are growing evidences that non-HLA antibodies are associated with transplant rejection. In this study it was investigated the presence of anti-endothelial cell antibodies (AECA) in 11 patients who had early lost their transplanted kidney by irreversible humoral rejection and in 2 ones from renal venal thrombosis. The absence of anti-HLA antibodies against the donor was verified by the negativity of crossmatches performed using the most sensitive assays, at the transplant, at the rejection, and before and after the transplantectomy Antibodies from 9 eluates bound to EAHy.926. Positive and negatives eluates were tested against frozen sections from 6 normal kidneys in order to define the structures to which they were reactive. The reactivity was identified by indirect immunofluorescence method. From 13 eluates evaluated, 4 (isotipe IgG) and 5 (isotipe IgM) reacted to the glomerulus and renal arterial endothelium with intense fluorescence but they did not react to the Bowmans capsule and tubular epithelium. No polymorphism was observed in eluates reactivity. In conclusion, we have shown that non-HLA antibodies may represent a cause of the humoral rejection. These antibodies are probably recognizing antigens of a nonpolymorphic system in endothelial cells present, mainly, in the glomerular capillaries.

Thesis (MTech (Chemistry))--Cape Peninsula University of Technology, 2015. / Immunosensors are analytical devices comprising antibody (Ab) molecules intimately integrated with electronic physicochemical transducers. Abs are responsible for specific recognition of an analyte so called antigen (Ag) while transducers are responsible for the conversion of chemical changes brought about by Ab-Ag interactions into measurable and processable signal. Amongst the many analytical tools, immunosensors have shown outstanding performance in applications in fields such as clinical diagnostics, agricultural purposes and environmental monitoring. They have come in place of the many conventional analytical methods which showed a number of disadvantages; high cost and longer time of operation, and requirement of highly knowledgeable personnel. On the other hand, immunosensors have shown potential to overcome these constraints. Their advantages include possibilities of portability, miniaturization, and simplified procedures. Of the possible fields of immunosensor applications, this study focussed on the environmental aspect. The safety of the environment is good for the well-being even though there are still some environmental threats that exist. Polychlorinated biphenyls (PCBs) have reportedly been found to be some of the potential substances to pose such threats due to their toxic and persistent behaviour. In this study, we have developed an electrochemical immunosensor as an analytical tool for the analysis and monitoring of PCBs. The development was based on the use of silver nanoparticles-doped polyaniline (PANI/Ag NPs) for modification of an electrode as a process for fabrication of the transducer. The PANI/Ag NPs composite was deposited on the glassy carbon (GC) and platinum (Pt) electrodes by oxidative electropolymerization of aniline in the presence of Ag NPs in 1 M HCl using cyclic voltammetry (CV) by ramping the potential from -0.1 to 1.4 V at 50 mV/s. The composite was then characterized and evaluated as a potential material for electrochemical transduction. Evaluation was on electroactivity, which is the main property of interest for materials used in the fabrication of electrochemical devices. The PANI composites were characterized using spectroscopic (FTIR), microscopic (TEM) and electrochemical CV techniques. Results confirmed the formation of PANI in its emeraldine form and the presence of Ag NPs. Characteristic functional groups and peaks of PANI were observed in FTIR and CV respectively. TEM micrograms showed one dimensional nanofibric tubes and crystalline-like structure of the composite. The incorporation of Ag NPs was indicated by the transition from the amorphous (PANI) to crystalline (PANI/Ag NPs) structure accompanied by increase in size as well as smoothness of the tubes. EDS-TEM counts increase of the chlorine (Cl) peaks is due to the closeness of these peaks to those of Ag, thus confirming incorporation of Ag NPs.

No description available.

A imunodeficiência comum variável (CVID) é caracterizada por hipogamaglobulinemia. Anteriormente identificou-se uma paciente com CVID que apresenta nível aumentado de estresse de retículo endoplasmático (ER), secundário a desregulação da via UPR. No presente trabalho, estendemos esta análise para outros pacientes e avaliamos o perfil de maturação de seus linfócitos B. Métodos: Western-blot, RT-PCR, Q-PCR, Citometria de Fluxo e cultura de células B ex vivo e imortalizadas. Resultados: A análise de 16 pacientes com CVID e 9 indivíduos saudáveis revelou três pacientes com porcentagens aumentadas de linfócitos B imaturos no sangue periférico. A análise da expressão de RNAm para BiP e XBP-1 em linfócitos B destes pacientes, após estímulo com LPS in vitro, identificou que os linfócitos B de um deles apresenta estresse de RE. Conclusão: Identificamos um subgrupo de pacientes com CVID que apresentam linfócitos B imaturos no sangue periférico. Um membro deste subgrupo apresenta estresse aumentado de ER. / Common Variable Immunodeficiency (CVID) is characterized by hypogammaglobulinemia. Previously a CVID patient was identified with increased levels of Endoplasmic Reticulum (ER) stress due to dysregulation of the UPR. In the present study these analyses were performed in other patients and healthy donors. Maturation markers of B lymphocytes were also characterized in these individuals. Methods: Western-blot, RT-PCR, Q-PCR, Flow cytometry and culturing of ex vivo and immortalized B cells. Results: The analysis of 16 CVID patients and 9 healthy donors revealed three patients that present higher percentage of immature B cells in peripheral blood. Analysis of expression of BiP and XBP1 induced by LPS treatment of B lymphocytes from these patients revealed that one patient present increased levels of ER stress.