According to the American Cancer Society, Cancer is the second most common cause of death in the United States, only exceeded by heart disease. Over the past decade, deciphering the complex structure of individual cells and understanding the symptoms of cancer disease has been a highly emphasized research area. The exact cause of Cancer and the genetic heterogeneity that determines the severity of the disease and its response to treatment has been a great challenge. Researchers from the engineering discipline have increasingly made use of recent technological innovations, namely the Atomic Force Microscope (AFM), to better understand cell physics and provide a means for cell biomechanical profiling. The presented work's research objective is to establish a fundamental framework for the development of novel biosensors for cell separation and disease diagnosis. By using AFM nanoindentation, several studies were conducted to identify key distinctions in the trends of cell viscoelasticity between healthy, nontumorigenic cells and their malignant, highly tumorigenic counterparts. The possibility of identifying useful 'biomarkers' was also investigated. Due to the lack of an available human ovarian cell line, experiments were done on a recently developed mouse ovarian surface epithelial (MOSE) cell line, which resembles to human cell characteristics and represents early, intermediate, and late stages of the ovarian cancer. Material properties were extracted via Hertz model contact theory. The experimental results illustrate that the elasticity of late stage MOSE cells were 50% less than that of the early stage. Cell viscosity also decreased by 65% from early to late stage, indicating that the increase in cell deformability directly correlates with increasing levels of malignancy. Various cancer treatment and component-specific drugs were used to identify the causes for the changes in cell biomechanical behavior, depicting that the decrease in the concentration levels of cell structural components, predominantly the actin filament framework, is directly associated with the changes in cell biomechanical property. The investigation of MOSE cells being subject to multiple mechanical loads illustrated that healthy cells react to shear forces by stiffening up to 25% of their original state. On the other hand, cancerous cells are void of such response and at times show signs of decreasing rigidity. Finally, deformation studies on MOSE cancer stem cells have shown that these cells carry a unique elasticity profile among other cell stage phenotypes that could allow for their detection. The results herein carry great potential into contributing to cell separation methods and analysis, furthering the understanding of cell mechanism dynamics. While prior literature emphasizes on the elastic modulus of cells, the study of cell viscosity and other key material properties holds a critical place in the realistic modeling of these complex microstructures. A comprehensive study of individual cells holds a great amount of promise in the development of effective clinical research in the fight against cancer. / Master of Science

京都大学 / 新制・課程博士 / 博士(工学) / 甲第25287号 / 工博第5246号 / 新制||工||1999(附属図書館) / 京都大学大学院工学研究科材料工学専攻 / (主査)教授 杉村 博之, 教授 邑瀬 邦明, 准教授 小林 圭 / 学位規則第4条第1項該当 / Doctor of Agricultural Science / Kyoto University / DFAM

Metal-based nanoparticles (MNPs) are becoming increasingly common in commercial products. Release of these materials into the environment raises concerns about the potential risks they pose to aquatic life. Predicting these risks requires an understanding of MNPs' chemical transformations. In this study, arrays of immobilized MNPs fabricated by nanosphere lithography (NSL) were used to investigate environmental transformations of MNPs. Specifically, sulfidation of silver nanoparticles (Ag NPs) and dissolution of copper-based nanoparticles (Cu NPs) were investigated. Atomic force microscopy (AFM) and transmission electron microscopy were the primary analytical techniques for these investigations. Because the MNPs were immobilized on a solid surface, the samples were field deployable, environmentally relevant metal concentrations were maintained, and the confounding influence of MNP aggregation was eliminated. Ag NP samples were deployed in a full-scale wastewater treatment plant. Sulfidation occurred almost exclusively in anaerobic zones of the WWTP, where the initial sulfidation rate was 11-14 nm of Ag converted to Ag2S per day. Conversion to Ag2S was complete within 7-10 d. Dissolution rates of Cu-based NPs were measured in situ over a range of pH by flow-cell AFM. Based on the measured rates, CuO/Cu(OH)2 NPs dissolve completely within a matter of hours at any pH, metallic Cu NPs persist for a few hours to days, and CuxS NPs do not dissolve significantly over the time scales studied. Field deployment of samples in a freshwater stream confirmed these conclusions for a natural aquatic system. This research demonstrates that environmental transformations of MNPs will be a key factor in determining the ultimate form and concentration of NPs that aquatic organisms will be exposed to. / Ph. D.

During morphogenesis, epithelial tissues undergo dramatic changes in shape, transitioning from flat sheets to three-dimensional folded structures. This remarkable transformation relies on dynamic changes in mechanical tension at both their apical and basal surfaces. While it is well-established that the generation of mechanical tension at the apical side is driven by the actomyosin network, research on this process has often overlooked the generation of mechanical tension at the basal surface. Moreover, the mechanical response to stress, encompassing both elastic (spring-like) and viscous (fluid-like) properties, is important for epithelial transformations, yet this mechanical response is poorly understood for the basal cell surface. In this thesis, we investigated how basal tension is influenced by the basement membrane - an extracellular matrix layer which has been widely regarded as a passive scaffold for cells. We probed the material mechanical response of the basement membrane and directly measured and analyzed basal tension in the wing imaginal disc epithelium of Drosophila. To study the mechanical response, I used long-term confocal imaging and fluorescence recovery after photobleaching (FRAP) to analyze the turnover and mobility of Collagen IV, a component of the basement membrane. The low Collagen IV mobility and turnover (≈ 40 hours) suggest a solid-like behavior of the basement membrane at the time scale of hours. Moreover, Atomic Force Microscopy (AFM) force-indentation curves reveal low hysteresis and an elastic solid-like response. To measure basal mechanical tension, I probed the basement membrane with an AFM. Interpreting the results of AFM shallow indentations on the basal side of explanted wing discs as indenting into a fixed, elastic, stretched thin film, I investigated in control conditions and after molecular perturbations basal mechanical tension. Mechanical tension was ≈ 0.4 mN/m. The removal of collagen IV by collagenase significantly reduced basal tension while increasing basal cell surface area. In addition, inhibition of actomyosin activity through different reagents reduces basal tension while decreasing basal cell surface area. These results indicate that basal tension depends on both the ECM and actomyosin activity. They also indicate that the basement membrane is under expansile stress. Finally, to further investigate the mechanisms underlying the generation of stretch in the basement membrane, I analyzed the influence of hydrostatic pressure and actomyosin contractility along the lateral cell surfaces. These mechanisms exert mechanical forces that increase basal cell area, inducing a stretch in the basement membrane. Mild hypo- or hyperosmotic shocks resulted in increased or decreased basal cell area and basal tension, respectively. Moreover, optogenetic activation of actomyosin at lateral cell surfaces resulted in an increase in both basal cell area and basal tension. In summary, our research quantifies basal tension and unveils that the basement membrane is an elastic material (at time scale of hours). Furthermore, our data suggest that the basement membrane is under elastic stretch generated by hydrostatic pressure and actomyosin contractility. Thus, rather than being a passive scaffold for cells, the elastic properties of the basement membrane contribute to basal tension and thereby the shaping of cells and tissues.

In the first part of this study, frictional and normal forces in aqueous solutions were measured between a glass particle and oligopeptide films grafted from a glass plate. Homopeptide molecules consisting of 11 monomers of different amino acids were each "grafted from" an oxidized silicon wafer using microwave-assisted solid phase peptide synthesis. Oligopeptides increased the magnitude of friction compared to a bare hydrophilic silicon wafer. Friction was a strong function of the nature of the monomer unit and was lower for hydrophilic films. There was a strong adhesion and therefore friction between surfaces of opposite charges. Changes in adhesion and friction depended on the hydrophobicity and electrostatic forces: hydrophobic films and oppositely charged films produced high friction, whereas hydrophilic and like-charges produced low friction. Friction was lower in phosphate buffered saline than in pure water due to the screening of the double layer attraction for oppositely charged surfaces and additional lubrication by hydrated salt ions. We also investigated antimicrobial action of poly (allyl amine) (PA) when covalently bonded to glass. Glass surfaces were prepared by a two-step procedure where the glass was first functionalized with epoxide groups using 3-glycidoxypropyltrimethoxy silane (GOPTS) and then exposed to PA to bind via reaction of a fraction of its amine groups. Antibacterial properties of these coatings were evaluated by spraying aqueous suspensions of bacteria on the functionalized glass slides, incubating them under agar, and counting the number of surviving cell colonies. The PA film displayed strong anti-microbial activity against both Gram-positive and Gram-negative bacteria. Films that were prepared by allowing the PA to self assemble onto the solid via electrostatic interactions were ineffective antimicrobials. Such films had an insufficient positive charge and did not extend far from the solid. Thus we found that antimicrobial activity was correlated with a combination of the ability of the polymer chain to extend into solution and a positive surface potential. / Ph. D.

A number of microcantilever systems of fundamental importance are explored using theoretical and numerical methods to quantify and provide physical insights into the dynamics of experimentally accessible systems that include a variety of configurations and viscous fluids. It is first shown that the correlated dynamics of both a laterally and vertically offset cantilever pair can be accurately predicted by numerical simulations. This is verified by comparing the correlated dynamics yielded by numerical simulations with experimental measurement. It is also demonstrated that in order to obtain these accurate predictions, geometric details of the cantilever must be included in the numerical simulation to directly reflect the experimental cantilever. A microrheology technique that utilizes the fluctuation-dissipation theorem is proposed. It is shown that by including the frequency dependence of the fluid damping, improvements in accuracy of the predictions of the rheological properties of the surrounding fluid are observed over current techniques. The amplitude spectrum of a 2-D cantilever in a power-law fluid is studied. The resulting amplitude spectrum yielded a curve similar to an overdamped system. It is observed that the amplitude and noise spectrum yield the same qualitative response for a 2-D cantilever in a shear thinning, power-law fluid. The correlated dynamics of a tethered vertically offset cantilever pair is investigated. It is shown that for a range of stiffness ratios, which is the ratio of the spring constant of the tethering relative to the cantilever spring constant, the change in the correlated dynamics of a Hookean spring tethered cantilever pair can be seen in the presence of fluid coupling. The dynamics of a spring-mass tethered, vertically offset cantilever pair is qualitatively studied by simplifying the model to an array of springs and masses. The resulting study found that the correlated dynamics of the displacement of mass of the tethered object yielded newly observed features and characteristics. It is shown that the curve shape of the cross-correlation of the displacement of the mass of the tethered object is similar to that of the auto-correlation of the displacement of the mass representing a step forced cantilever. The cross-correlation of the displacement of the mass of the tethered object, however, is found to be significantly more dependent on the stiffness ratio than the auto-correlation of the displacement of the mass representing a cantilever for t > 0. At t = 0, it is observed that the mass of the tethered object yields the same finite value for the cross-correlation for all studied values of the stiffness ratio. This characteristic is a result of the symmetry of the studied spring-mass system. / Ph. D.

This dissertation focused on the potential use of highly charged nanoparticles to stabilize dispersions of weakly charged microparticles. The experimental components of the project centered on a model colloidal system containing silica microparticles at the isoelectric point where the suspensions are unstable and prone to flocculation. The stability of the silica suspensions was studied in the presence of highly charged nanoparticles. Initial experiments used polystyrene latex with either sulfate or amidine surface groups. Effective zeta potentials were measured with nanoparticle concentrations ranging from 0.001% to 0.5% vol. Adsorption levels were determined through direct SEM imaging of the silica microparticles, showing that the nanoparticles directly adsorbed to the microparticles (amidine more than sulfate), producing relatively large effective zeta potentials. However, stability experiments showed that the latex nanoparticles did not stabilize the silica but merely provided a reduction in overall flocculation rate. It was concluded that the zeta potential was an insufficient predictor of stability as there was still sufficient patchiness on the surface to allow for the silica surfaces to aggregate. Experiments using zirconia and alumina nanoparticles did achieve effective stabilization; both types stabilized the silica suspensions for longer than the observation period of approximately 15 hours. Stability was observed at concentrations of 10^-4% to 1.0% (zirconia) and 10^-2% vol. (alumina). These particles adsorbed directly to the microparticles (confirmed via SEM) and produced increasing effective zeta potentials with increasing nanoparticle concentrations. The adsorption resulted in significant electrostatic repulsion that was determined to be effectively irreversible using colloidal probe AFM. The improved stabilizing ability was attributed to the increased van der Waals attraction between the oxide nanoparticles (compared to polystyrene). Finally, an unexpected result of the CP-AFM force measurements showed that the repulsive forces between a nanoparticle-coated particle and plate lacked the normal dependence on the radius of the probe as predicted by the Derjaguin approximation. The forces observed in nanoparticle suspensions were virtually identical for 5 µm and 30 µm probes. Based on calculations of the shear rate in the gap, it was theorized that this phenomenon may have resulted from the shearing of adsorbed particles from the surfaces, which leads to similar interaction geometries for the two probe sizes. / Ph. D.

The environmental fate and transport of engineered nanomaterials have been broadly investigated and evaluated in many published studies. Silver nanoparticles (AgNPs) represent one of the most widely manufactured nanomaterials. They are currently being incorporated into a wide range of consumer products due to their purported antimicrobial properties. However, either the AgNPs themselves or dissolved Ag+ ions has a significant potential for the environmental release. The safety issues for nanoparticles are continuously being tested because of their potential danger to the environment and human health. Studies have explored the toxicity of AgNPs to a variety of organisms and have shown such toxicity is primarily driven by Ag+ ion release. Dissolution of nanoparticles is an important process that alters their properties and is a critical step in determining their safety. Therefore, studying nanoparticles' dissolution can help in the current move towards safer design and application of nanoparticles. This research endeavor sought to acquire comprehensive kinetic data of AgNP dissolution to aid in the development of quantitative risk assessments of AgNP fate. To evaluate the dissolution process in the absence of nanoparticle aggregation, AgNP arrays were produced on glass substrates using nanosphere lithography (NSL). Changes in the size and shape of the prepared AgNP arrays were monitored during the dissolution process by atomic force microscopy (AFM). The dissolution of AgNP is affected by both internal and external factors. First, surface coating effects were investigated by using three different coating agents (BSA, PEG1000, and PEG5000). Capping agent effects nanoparticle transformation rate by blocking reactants from the nanoparticle surface. Coatings prevented dissolution to different extents due to the various way they were attached to the AgNP surface. Evidence for the existence of bonds between the coating agents and the AgNPs was obtained by surface enhanced Raman spectroscopy. Moreover, to study the size effects on AgNP dissolution, small, medium, and large sized AgNPs were used. The surrounding medium and temperature were the two variables that were included in the size effects study. Relationships were established between medium concentration and dissolution rate for three different sized AgNP samples. By using the Arrhenius equation to plot the reaction constant vs. reaction temperature, the activation energy of AgNPs of different sizes were obtained and compared. / Doctor of Philosophy / Nanomaterials, defined as materials with at least one characteristic dimension less than 100 nm, often have useful attributes that are distinct from the bulk material. The novel physical, chemical, and biological properties enable the promising applications in various manufacturing industry. Silver nanoparticles (AgNPs) represent one of the most widely manufactured nanomaterials and has been used as the antimicrobial agent in a wide range of consumer products. However, either the AgNPs themselves or dissolved Ag+ ions has a significant potential for the environmental release. The environmental fate and transport of AgNPs drawn considerable attentions because of the potential danger to environment and human health. Dissolution of nanoparticles is an important process that alters their properties and is a critical step in determining their safety. Ag+ ions migrate from the nanoparticle surface to the bulk solution when an AgNP dissolves. Studying nanoparticles' dissolution can help in the current move towards safer design and application of nanoparticles. This research aimed to acquire comprehensive kinetic data of AgNP dissolution to aid in the development of quantitative risk assessments of AgNP fate. AgNP arrays were produced on glass substrates using nanosphere lithography (NSL) and changes in the size and shape during the dissolution process were monitored by atomic force microscopy (AFM). First, surface coating effects were investigated by using three different coating agents. Coatings prevented dissolution to different extents due to the various way they were attached to the AgNP surface. Moreover, small, medium, and large sized AgNPs were used to study the size effects on AgNP dissolution. The surrounding medium concentration and temperature were the two variables that were included in the size effects study.

Graphene, one-atom-thick planar sheet of carbon atoms densely packed in a honeycomb crystal lattice, has grabbed appreciable attention due to its exceptional electronic, mechanical and optical properties. Chemical functionalization schemes are needed to integrate graphene with the different materials required for potential applications. Molecular self-assembly behavior on graphene is a key method to investigate the mechanism of interaction between molecules and graphene and the promising applications related to molecular devices. In this thesis, we report the molecular self-assembly behavior of phenyl-C61-butyric acid methyl ester (PCBM), C60, perylenetetracarboxylic dianhydride (PTCDA) and Gd3N@C80 on flat and rippled graphene 2D material by the experimental methods of scanning tunneling microscope (STM) and atomic force microscope (AFM) and by the theoretical method of density functional theory (DFT). We found that molecules form ordered structures on flat graphene, while they form disordered structure on rippled graphene. For example, PCBM forms bilayer and monolayer structures, C60 and Gd3N@C80 form hexagonal close packed (hcp) structure on flat graphene and PTCDA forms herringbone structure on flat graphene surface. Although C60 and Gd3N@C80 both form hcp structure, C60 forms a highly ordered hcp structure over large areas with little defects and Gd3N@C80 forms hcp structure only over small areas with many defects. These differences of structure that forms on flat graphene is mainly due to the molecule-molecule interactions and the shape of the molecules. We find that the spherical C60 molecules form a quasi-hexagonal close packed (hcp) structure, while the planar PTCDA molecules form a disordered herringbone structure. From DFT calculations, we found that molecules are more effected by the morphology of rippled graphene than the molecule-molecule interaction, while the molecule-molecule interaction plays a main role during the formation process on flat graphene. The results of this study clearly illustrate significant differences in C60 and PTCDA molecular packing on rippled graphene surfaces. / Doctor of Philosophy / As the first physical isolated two-dimensional (2D) material, graphene has attracted exceptional scientific attention. Due to its impressive properties including high carrier density, flexibility and transparency, graphene has numerous potential applications, such as solar cell, sensors and electronics. 2D molecular self-assembly is an area that focuses on organization and interaction between self-assembly behaviors of molecules on surface. Graphene is an excellent substrate for the study of molecular self-assembly behavior, and study of molecular study is very important for graphene due to potential applications of molecules on graphene. In this thesis, we present investigations of the molecular self-assembly of PCBM, C60, PTCDA and Gd3N@C80 on graphene substrate. First, we report the two types of bilayer PCBM configuration on HOPG with a step height of 1.68 nm and 1.23 nm, as well as two types of monolayer PCBM configuration with a step height of 0.7 nm and 0.88 nm, respectively. On graphene, PCBM forms one type of PCBM bilayer with a step height of 1.37 nm and one type of PCBM monolayer with a step height of 0.87 nm. By building and analyzing the models of PCBM bilayers and monolayers, we believe the main differences between two configurations of PCBM bilayer and monolayer is the tilt angle between PCBM and HOPG, which makes type I configuration the higher molecule density and binding energy. Secondly, we report the investigation of self-assembly behaviors of C60 and PTCDA on flat graphene and rippled graphene by experimental scanning tunneling microscope (STM) and theoretical density functional theory (DFT). On flat graphene, C60 forms hexagon close pack (hcp) structure, while PTCDA forms herringbone structure. On rippled graphene, C60 forms quasi-hcp structure while PTCDA forms disordered herringbone structure. By DFT calculation, we study the effect of graphene curvature on spherical C60 and planar PTCDA. Finally, we report a STM study of a monolayer of Gd3N@C80 on graphene substrate. Gd3N@C80 forms hcp structure in a small domain with a step height of 0.88 nm and lattice constant of 1.15 nm. According to our DFT calculation, for the optimal organization of Gd3N@C80 and graphene, the gap between Gd3N@C80 and graphene is 3.3 Å and the binding energy is 0.95 eV. Besides, the distance between Gd3N@C80 and Gd3N@C80 is 3.5 Å and the binding energy is 0.32 eV.

Reservoir characterization is an essential step in the oil/gas exploration process and is of great significance in the evaluation of oil/gas resources. To evaluate the production potential of the Lower Huron shale in the central Appalachian Basin, matrix permeability, Raman spectroscopy, Fourier Transform infrared spectroscopy (FTIR), and atomic force microscopy (AFM) were used in this study. According to the experimental results, matrix permeability is relatively high for a shale gas formation, suggesting great production potential of shale gas resources in this region. Additionally, four shale samples with varying thermal maturity were characterized by the complementary Raman and FTIR spectroscopy, and curve-fitting results successfully demonstrated the change of chemical structures with the evolution of thermal maturity. Raman spectroscopy results show that the curve fitted G band position and the band separation between the G band and D1 band tend to increase with the rise of thermal maturity level. Results of FTIR spectroscopy show that the aromaticity level and the condensation extent of aromatic rings show an increasing tendency with the increase of maturation level. Moreover, mechanical properties of these four shale samples were characterized by AFM. Results show that Young's modulus is in the range of 8.20 GPa - 12.94 GPa, which is in the normal range compared with the results from other shale formations. Additionally, scanned results show an increasing tendency for Young's modulus of the organic components with the rise of thermal maturity level in these shale samples. The potential reason for this phenomenon was also explored, specifically, the growth of aromatic groups and the decrease of the CH2/CH3 ratio may be possible reasons for the rise of Young's modulus of organic components in these shale samples. This work is meaningful for the evaluation of shale gas resources, especially emerging plays, in the central Appalachian Basin, and it also provides a valuable database for relevant research on shale matrix permeability, Raman, FTIR and AFM. / Master of Science / Reservoir characterization is important in evaluating the production potential of unconventional resources. The purpose of this work is to characterize key reservoir properties of shale samples from the central Appalachian Basin to provide support for improved shale gas production in this region. This work includes the analysis of matrix permeability testing, Raman and Fourier Transform infrared spectroscopy (FTIR) characterization, and atomic force microscopy (AFM) mapping. Matrix permeability testing results show that the matrix permeability of these six samples is relatively high for a shale gas formation, suggesting great production potential of shale gas resources in this region. Additionally, four shale samples with different thermal maturity were scanned using Raman and FTIR spectroscopy, and mineral components of these same four samples were also identified by the FTIR analysis. Processed Raman data show that two important measures, the G band position and the difference between the G band position and D1 band position, tend to increase with the rise of thermal maturity. FTIR results show that the aromaticity rings would likely be compressed due to the increased number of aromaticity rings. Also, AFM provides a high-resolution map for the Young's modulus, a measure of material stiffness, of these four samples. The modulus value is in the normal range compared with scans from other shale formations. In addition, the modulus value tends to increase with the increase of thermal maturity level. The increase of aromatic rings and the decrease of the CH2/CH3 ratio can be regarded as potential reasons for the change of modulus value. This work has potential to improve the production design of shale gas resources, especially emerging plays, in the central Appalachian Basin and can be regarded as a valuable reference for other similar research.