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Polydopamine (PDA) surfaces have attracted much attention, both for their innate capability as a versatile biomaterial and their standalone antibacterial and adhesive properties. However, the mechanics of PDA deposition as well as the attributes of PDA-coated surfaces remain relatively underexplored despite their adaptability and ease of deposition. Two polydopamine surfaces from literature, smooth and rough PDA (sPDA and rPDA), were compared to a novel surface, inverted PDA (iPDA), to further explore their mechanochemical and bioactive properties. The iPDA surface displayed, by design, a smoother topography when compared to sPDA, with smaller aggregate structures covering 2.7% of the overall surface. However, the chemical signature obtained via Raman spectroscopy of these aggregates shared remarkable similarities at the 1370 cm-1 peak with the rougher rPDA surface, leading to the conclusion that gas exchange at the solution surface may play a critical role in determining PDA subunit composition despite dissimilar deposition methods. Atomic force microscopy (AFM) analysis concluded that the iPDA surface was ~17% more adhesive than other PDA types, while also displaying relatively large hysteresis and a small Young’s modulus. Human osteoblastic MG-63 cells cultured on all three surfaces revealed that a smoother surface topography correlated to more pronounced anisotropic spread independent of cell size, while a serum-independent component was also noted. This work provides a clearer insight into the nature of polydopamine surfaces by the creation of a viable new deposition method, providing an analysis of its mechanochemical and bioactive properties as well as a deeper understanding of the PDA coating process.

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Botulinum Neurotoxin (BoNT) is one of the most potent toxins known to human kind. The Atomic Force Microscope (AFM) was employed to investigate the conditions under which BoNT type A heavy chain would bind and/or insert into mica supported dipalmitoylphosphatidylcholine (DPPC) lipid bilayers. As an alternate technique, DPPC/GT1b or total ganglioside extract (80:20) monolayers of a Langmuir Blodgett (LB) Trough were adapted to be artificial membrane models for toxin insertion studies. We conclude that LB monolayer studies are a promising candidate for BoNT/A membrane insertion investigation. Botulinum neurotoxin serotype A insertions into the LB monolayers in the presence of BoNT/A low affinity ganglioside receptor alone, independent of pH. This thermodynamic evidence indicates that BoNT/A may begin its heavy chain insertion into the cholinergic nerve ending before endocytosis and acidification.

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Lipid molecule is well known natural building block to form different supramolecular structures with specific shape, size and functionality. In my thesis work, I have used DC8,9PC 1,2-bis(tricosa-10,12-dinoyl)-sn-glycero-3-phosphocholine), a type of chiral lipid to form the vesicles, tubules and ribbons . By using Atomic Force Microscope, I have studied the morphological features of these particular structures. Also, the mechanical properties of lipid tubules have been studied using AFM. Softlithography has been used to pattern the lipid vesicles and tubules into 2-dimensional and 3-dimensional ordered arrays. The structure of self-assembled hollow spherical vesicles was studied using AFM. The applications of soft lithography in patterning polymerized lipid vesicles of DC8,9PC on glass substrates are reported. It has been demonstrated that the lipid vesicles can be used as a high-molecular weight ink to be transferred from a PDMS stamp onto a glass substrate to form two-dimensional stripes with a controlled separation over a large area. By combining channel flow with dewetting within microfluidic networks, vesicles were assembled into one-dimension lines on a glass substrate. The vesicle lines can also be selectively removed from the substrate with lift-up process. The direct and precise assembly of lipid vesicles on solid substrates will open up the possibility of integrating them in biosensors and microelectronic devices. Lipid tubules and helices are other extremely interesting superstructures that have captured the imagination of scientists in disciplines from biology through material science to chemistry and physics. Lipid tubules are self-assembled hollow cylindrical structures with opened ends, composed of rolled-up bilayers. They have been used as a template for the synthesis of inorganic materials, a substrate for the crystallization of proteins, a controlled release system for drug deliver, and a colorimetric material for chemical sensors. However, due to the high aspect ratio, the formation of ordered arrays of lipid tubules on substrates still remains to be challenging. In this thesis work, the application of well-known soft lithography techniques in assembling and manipulating lipid tubules on substrates has been reported. I show that lipid nano- and microtubules can be assembled into two-dimensional (2-D) parallel arrays with controlled separations by combining fluidic alignment with dewetting, which occur within microchannels. It has also been shown that lipid tubules can be assembled into 3-D crossbar arrays with fluidic alignment, which occurs within microfluidic networks. The deposition experiments with silica colloidal particles show that the 2-D parallel-aligned tubules can be used as a template to synthesize silica films with controlled morphologies and patterns on substrates in a single-step process. Atomic force microscopy studies show that the resulting silica films replicate the shape, orientation, and pattern of aligned tubule templates. Though, the structures of the lipid tubules have been extensively studied, but very little is known about their mechanical properties. In my work, the mechanical properties of the lipid tubules of DC8,9PC were studied with atomic force microscope. The deformation of the lipid tubules with different outer diameters is directly observed in both tapping and contact modes with increasing loading forces.

The focus of this dissertation is the study of measuring light not by energy transfer as is done with a standard photodetector such as a photographic film or charged coupled device, but rather by the forces which the light exerts on matter. In this manner we are able to replace or complement standard photodetector-based light detection techniques. One key attribute of force detection is that it permits the measurement of light over a very large range of frequencies including those which are difficult to access with standard photodetectors, such as the far IR and THz. The dissertation addresses the specific phenomena associated with optically induced force (OIF) detection in the near-field where light can be detected with high spatial resolution close to material interfaces. This is accomplished using a scanning probe microscope (SPM), which has the advantage of already having a sensitive force detector integrated into the system. The two microscopies we focus on here are atomic force microscopy (AFM) and nearfield scanning optical microscopy (NSOM). By detecting surface-induced forces or force gradients applied to a very small size probe (~ 20 nm diameter), AFM measures the force acting on the probe as a function of the tip-sample separation or extracts topography information. Typical NSOM utilizes either a small aperture (~ 50 150  nm diameter) to collect and/or radiate light in a small volume or a small scatterer (~ 20 nm diameter) in order to scatter light in a very small volume. This light is then measured with an avalanche photodiode or a photomultiplier tube. These two modalities may be combined in order to simultaneously map the local intensity distribution and topography of a sample of interest. A critical assumption made when performing iv such a measurement is that the distance regulation, which is based on surface induced forces, and the intensity distribution are independent. In other words, it is assumed that the presence of optical fields does not influence the AFM operation. However, it is well known that light exerts forces on the matter with which it interacts. This light-induced force may affect the atomic force microscope tip-sample distance regulation mechanism or, by modifying the tip, it may also indirectly influence the distance between the probe and the surface. This dissertation will present evidence that the effect of optically induced forces is strong enough to be observed when performing typical NSOM measurements. This effect is first studied on common experimental situations to show where and how these forces manifest themselves. Afterward, several new measurement approaches are demonstrated, which take advantage of this additional information to either complement or replace standard NSOM detection. For example, the force acting on the probe can be detected while simultaneously extracting the tip-sample separation, a measurement characteristic which is typically difficult to obtain. Moreover, the standard field collection with an aperture NSOM and the measurement of optically induced forces can be operated simultaneously. Thus, complementary information about the field intensity and its gradient can be, for the first time, collected with a single probe. Finally, a new scanning probe modality, multi-frequency NSOM (MF-NSOM), will be demonstrated. In this approach, the tuning fork is driven electrically at one frequency to perform a standard tip-sample distance regulation to follow the sample topography and optically driven at another frequency to measure the optically induced force. This novel technique provides a viable alternative to standard NSOM scanning and should be of particular interest in the long wavelength regime, e.g. far IR and THz.