Com este estudo, objetivou-se avaliar o efeito de estirpes de Bacillus thuringiensis (Bt) na degradabilidade e digestibilidade da dieta, emissão de gases, microbiota ruminal, parâmetros sanguíneos e desempenho de ovinos. O estudo foi dividido em 2 experimentos: ensaio in vitro de produção de gases para a avaliação de 6 diferentes estirpes de Bt (907, 1192, 2036, 2493, 2496 e S1185) e ensaio in vivo com a estirpe selecionada 2036 para investigação de possíveis interferências na digestão e saúde dos animais. A simulação do ambiente ruminal foi realizada em garrafas de vidro incubadas a 39 oC por 24 h. O delineamento foi o inteiramente casualizado com 7 tratamentos (Sem Bt (controle), Bt 907, Bt 1192, Bt 2036, Bt 2493, Bt 2496 e Bt S1185) com 4 repetições em duplicata. O processo fermentativo foi avaliado pelos resultados de matéria seca degradada (MSD), matéria orgânica degradada (MOD), produção líquida de gases totais, produção líquida de metano e eficiência da conversão de metano. Produtos da fermentação (pH, nitrogênio amoniacal (N-NH3) e ácidos graxos de cadeia curta (AGCC)) e micro-organismos ruminais (Fibrobacter succinogenes, Ruminococcus flavefaciens, fungos anaeróbicos, arqueas metanogênicas e protozoários) também foram estudados. Apenas a estirpe Bt 907 reduziu a MSD e MOD em relação ao controle, com manutenção da população de F. succinogenes, pois as demais estirpes reduziram a população desta bactéria. No ensaio in vivo 20 cordeiros Santa Inês com 3 meses de idade e 18 ± 3,5 kg PV foram utilizados e divididos em 2 grupos: 10 animais tratados com 2,5x106 esporos de Bt 2036 por kg PV/d e 10 animais não tratados (controle). Estes foram alojados em baias individuais em delineamento inteiramente casualizado e receberam dieta composta de feno de capim Tifton-85 (Cynodon spp.) ad libitum e 300 g/animal/d de concentrado, que foi ajustado de acordo com as exigências de crescimento. O período experimental in vivo teve duração de 63 dias, dos quais 53 compreendeu o teste de desempenho dos animais, com aferição do consumo 3 vezes na semana e pesagem quinzenal, e os 10 dias subsequentes destinou-se aos ensaios de digestibilidade aparente, balanço de nitrogênio, síntese de proteína microbiana e emissão de metano entérico. Durante todo o experimento, coletas se sangue foram realizadas quinzenalmente a fim de avaliar os parâmetros hematológicos (hemácias, hemoglobina, hematócrito e leucócitos) e bioquímicos (glicose, proteínas totais, albumina, aspartato aminotransferase, ureia e creatinina) dos animais para o diagnóstico de possível intoxicação. Características da fermentação ruminal também foram investigadas em 3 momentos (início, meio e fim do experimento) sobre as variáveis pH, N-NH3, AGCC, abundância relativa das espécies F. succinogenes, R. flavefaciens, populações de arqueas metanogênicas, fungos anaeróbicos e contagem de protozoários, por meio de coletas de líquido ruminal. Não houve influência da estirpe sobre as variáveis estudadas. Conclui-se que na avaliação in vitro apenas a estirpe Bt 907 reduziu a MSD e MOD com manutenção da população F. succinogenes e no experimento in vivo a inclusão de esporos de Bt 2036 na dieta não afetou de forma negativa o desempenho e nem a saúde dos ovinos / The objective of present study was to evaluate the effect of Bacillus thuringiensis (Bt) strains on degradability and digestibility of the diet, gas production, ruminal fermentation, blood parameters and performance in sheep. The study was divided into 2 experiments: in vitro gas production to evaluate six different Bt strains (907, 1192, 2036, 2493, 2496 and S1185) and in vivo assay with the selected strain (Bt 2036) to investigate possible interference in digestion and health of animals. The rumen simulation was performed in glass bottles incubated at 39 °C for 24 h. A completely randomized design with 7 treatments (No Bt (control), Bt 907, Bt 1192, Bt 2036, Bt 2493, Bt 2496 and Bt S1185) was used, with 4 replications in duplicate. The fermentation process was evaluated using dry matter degradability (DMD), organic matter degradability (OMD), net gas production, methane output and conversion efficiency. Fermentation products (pH, ammonia nitrogen (N-NH3), short chain fatty acids (SCFA)) and ruminal microorganisms (Fibrobacter succinogenes, Ruminococcus flavefaciens, anaerobic fungi, methanogenic archaea and protozoa) were also studied. Only strain Bt 907 reduced DMD and OMD in relation to the control and F. succinogenes populations were maintained, whereas other strains of this bacterium population were reduced. An in vivo assay using 20 Santa Ines lambs at 3 months of age and 18 ± 3.5 kg BW was carried out. These animals were divided into 2 groups: 10 animals treated with 2.5x106 spores of Bt 2036 per kg BW/d and 10 untreated animals (control). These were housed in individual pens in a completely randomized design and were fed a diet of Tifton-85 (Cynodon spp.) hay ad libitum and 300 g/animal/d of concentrate, which was adjusted according to animal growth. The in vivo experimental period lasted 63 days, of which 53 included the performance test of the animals, with measurement of feed consumption three times a week and fortnightly weighing. The final 10 days was devoted to tests of digestibility, nitrogen balance, microbial protein synthesis and enteric methane emission. Throughout the experiment, blood was collected fortnightly to assess hematological parameters (erythrocytes, hemoglobin, packed cell volume and leukocytes) and biochemical profiles such as (Glucose, total protein, albumin, aspartate aminotransferase, urea and creatinine) for the diagnosis of possible intoxication. Ruminal fermentation characteristics were investigated at three times (Initial, middle and end of the experiment) using pH, N-NH3, SCFA, microorganism population size (such as F. succinogenes, R. flavefaciens, methanogenic archaea, anaerobic fungi and protozoa) through ruminal fluid collections. There was no influence of Bt 2036 on ruminal fermentation characteristics. It is concluded that, for the in vitro evaluation, only strain Bt 907 reduced DMD and OMD, with F. succinogenes population being maintained and for the in vivo studies, the inclusion of Bt 2036 spores in the diet did not negatively affect health and performance of lambs

Com este estudo, objetivou-se avaliar o efeito de estirpes de Bacillus thuringiensis (Bt) na degradabilidade e digestibilidade da dieta, emissão de gases, microbiota ruminal, parâmetros sanguíneos e desempenho de ovinos. O estudo foi dividido em 2 experimentos: ensaio in vitro de produção de gases para a avaliação de 6 diferentes estirpes de Bt (907, 1192, 2036, 2493, 2496 e S1185) e ensaio in vivo com a estirpe selecionada 2036 para investigação de possíveis interferências na digestão e saúde dos animais. A simulação do ambiente ruminal foi realizada em garrafas de vidro incubadas a 39 oC por 24 h. O delineamento foi o inteiramente casualizado com 7 tratamentos (Sem Bt (controle), Bt 907, Bt 1192, Bt 2036, Bt 2493, Bt 2496 e Bt S1185) com 4 repetições em duplicata. O processo fermentativo foi avaliado pelos resultados de matéria seca degradada (MSD), matéria orgânica degradada (MOD), produção líquida de gases totais, produção líquida de metano e eficiência da conversão de metano. Produtos da fermentação (pH, nitrogênio amoniacal (N-NH3) e ácidos graxos de cadeia curta (AGCC)) e micro-organismos ruminais (Fibrobacter succinogenes, Ruminococcus flavefaciens, fungos anaeróbicos, arqueas metanogênicas e protozoários) também foram estudados. Apenas a estirpe Bt 907 reduziu a MSD e MOD em relação ao controle, com manutenção da população de F. succinogenes, pois as demais estirpes reduziram a população desta bactéria. No ensaio in vivo 20 cordeiros Santa Inês com 3 meses de idade e 18 ± 3,5 kg PV foram utilizados e divididos em 2 grupos: 10 animais tratados com 2,5x106 esporos de Bt 2036 por kg PV/d e 10 animais não tratados (controle). Estes foram alojados em baias individuais em delineamento inteiramente casualizado e receberam dieta composta de feno de capim Tifton-85 (Cynodon spp.) ad libitum e 300 g/animal/d de concentrado, que foi ajustado de acordo com as exigências de crescimento. O período experimental in vivo teve duração de 63 dias, dos quais 53 compreendeu o teste de desempenho dos animais, com aferição do consumo 3 vezes na semana e pesagem quinzenal, e os 10 dias subsequentes destinou-se aos ensaios de digestibilidade aparente, balanço de nitrogênio, síntese de proteína microbiana e emissão de metano entérico. Durante todo o experimento, coletas se sangue foram realizadas quinzenalmente a fim de avaliar os parâmetros hematológicos (hemácias, hemoglobina, hematócrito e leucócitos) e bioquímicos (glicose, proteínas totais, albumina, aspartato aminotransferase, ureia e creatinina) dos animais para o diagnóstico de possível intoxicação. Características da fermentação ruminal também foram investigadas em 3 momentos (início, meio e fim do experimento) sobre as variáveis pH, N-NH3, AGCC, abundância relativa das espécies F. succinogenes, R. flavefaciens, populações de arqueas metanogênicas, fungos anaeróbicos e contagem de protozoários, por meio de coletas de líquido ruminal. Não houve influência da estirpe sobre as variáveis estudadas. Conclui-se que na avaliação in vitro apenas a estirpe Bt 907 reduziu a MSD e MOD com manutenção da população F. succinogenes e no experimento in vivo a inclusão de esporos de Bt 2036 na dieta não afetou de forma negativa o desempenho e nem a saúde dos ovinos / The objective of present study was to evaluate the effect of Bacillus thuringiensis (Bt) strains on degradability and digestibility of the diet, gas production, ruminal fermentation, blood parameters and performance in sheep. The study was divided into 2 experiments: in vitro gas production to evaluate six different Bt strains (907, 1192, 2036, 2493, 2496 and S1185) and in vivo assay with the selected strain (Bt 2036) to investigate possible interference in digestion and health of animals. The rumen simulation was performed in glass bottles incubated at 39 °C for 24 h. A completely randomized design with 7 treatments (No Bt (control), Bt 907, Bt 1192, Bt 2036, Bt 2493, Bt 2496 and Bt S1185) was used, with 4 replications in duplicate. The fermentation process was evaluated using dry matter degradability (DMD), organic matter degradability (OMD), net gas production, methane output and conversion efficiency. Fermentation products (pH, ammonia nitrogen (N-NH3), short chain fatty acids (SCFA)) and ruminal microorganisms (Fibrobacter succinogenes, Ruminococcus flavefaciens, anaerobic fungi, methanogenic archaea and protozoa) were also studied. Only strain Bt 907 reduced DMD and OMD in relation to the control and F. succinogenes populations were maintained, whereas other strains of this bacterium population were reduced. An in vivo assay using 20 Santa Ines lambs at 3 months of age and 18 ± 3.5 kg BW was carried out. These animals were divided into 2 groups: 10 animals treated with 2.5x106 spores of Bt 2036 per kg BW/d and 10 untreated animals (control). These were housed in individual pens in a completely randomized design and were fed a diet of Tifton-85 (Cynodon spp.) hay ad libitum and 300 g/animal/d of concentrate, which was adjusted according to animal growth. The in vivo experimental period lasted 63 days, of which 53 included the performance test of the animals, with measurement of feed consumption three times a week and fortnightly weighing. The final 10 days was devoted to tests of digestibility, nitrogen balance, microbial protein synthesis and enteric methane emission. Throughout the experiment, blood was collected fortnightly to assess hematological parameters (erythrocytes, hemoglobin, packed cell volume and leukocytes) and biochemical profiles such as (Glucose, total protein, albumin, aspartate aminotransferase, urea and creatinine) for the diagnosis of possible intoxication. Ruminal fermentation characteristics were investigated at three times (Initial, middle and end of the experiment) using pH, N-NH3, SCFA, microorganism population size (such as F. succinogenes, R. flavefaciens, methanogenic archaea, anaerobic fungi and protozoa) through ruminal fluid collections. There was no influence of Bt 2036 on ruminal fermentation characteristics. It is concluded that, for the in vitro evaluation, only strain Bt 907 reduced DMD and OMD, with F. succinogenes population being maintained and for the in vivo studies, the inclusion of Bt 2036 spores in the diet did not negatively affect health and performance of lambs

The development of bio-resorbable implant materials is rapidly going on. Sterilization of those materials is inevitable to assure the hygienic requirements for critical medical devices according to the medical device directive (MDD, 93/42/EG). Biopolymer-containing biomaterials are often highly sensitive towards classical sterilization procedures like steam, ethylene oxide treatment or gamma irradiation. Supercritical CO2 (scCO2) treatment is a promising strategy for the terminal sterilization of sensitive biomaterials at low temperature. In combination with low amounts of additives scCO2 treatment effectively inactivates microorganisms including bacterial spores. We established a scCO2 sterilization procedure under addition of 0.25% water, 0.15% hydrogen peroxide and 0.5% acetic anhydride. The procedure was successfully tested for the inactivation of a wide panel of microorganisms including endospores of different bacterial species, vegetative cells of gram positive and negative bacteria including mycobacteria, fungi including yeast, and bacteriophages. For robust testing of the sterilization effect with regard to later application of implant materials sterilization all microorganisms were embedded in alginate/agarose cylinders that were used as Process Challenge Devices (PCD). These PCD served as surrogate models for bioresorbable 3D scaffolds. Furthermore, the impact of scCO2 sterilization on mechanical properties of polysaccharide-based hydrogels and collagen-based scaffolds was analyzed. The procedure was shown to be less compromising on mechanical and rheological properties compared to established low-temperature sterilization methods like gamma irradiation and ethylene oxide exposure as well as conventional steam sterilization. Cytocompatibility of alginate gels and scaffolds from mineralized collagen was compared after sterilization with ethylene oxide, gamma irradiation, steam sterilization and scCO2 treatment. Human mesenchymal stem cell viability and proliferation were not compromised by scCO2 treatment of these materials and scaffolds. We conclude that scCO2 sterilization under addition of water, hydrogen peroxide and acetic anhydride is a very effective, gentle, non-cytotoxic and thus a promising alternative sterilization method especially for biomaterials.

<p dir="ltr">Mass spectrometry has been at the forefront of complex mixture analysis and, as a result, has greatly advanced the understanding of biological systems with its application in the biological sciences. One area in which mass spectrometry has succeeded is the area of microbiology and the identification of pathogens and has gained much attention from the biothreat detection community. Although this technology has matured in the past decade, very few systems have been developed for point-of-need analysis in cases such as the detection of biothreats. Current MS systems for the analysis of microbes utilizing MALDI-TOF-MS require large instruments to accommodate a drift tube long enough for high resolution mass analysis and high vacuum which is not amenable to the miniaturization requirements of point-of-need analysis. The previously mentioned methods also require extensive manipulation of the sample which takes time and can pose a risk to instrument operators in the biothreat detection space. Additionally, most mass spectrochemical instruments provide only one-dimension of data which can limits classification accuracy when using classification algorithms to provide an identity on a microbiological sample which could consist of any of the numerous common bacterial pathogens or biothreats.</p><p dir="ltr">A possible solution to this problem is the implementation of two-dimensional tandem mass spectrometry (2D MS/MS) which allows the analysis of the product ions of all precursor ions representing the result in the 2D MS/MS data domain. This methodology is possible with a linear quadrupolar ion trap mass analyzer and can be applied to miniature ion trap technology for portability. In this dissertation, a progression of mass spectrochemical analysis of biological systems from conventional methods to the implementation of 2D MS/MS is demonstrated: by (i) the development of a rapid biomolecule extraction method to analyze bacterial spores, using a (ii) modified linear quadrupolar ion trap mass spectrometer, (iii) then a miniature ion trap mass spectrometer, and (iv) finally adding numerical methods to discriminate between biological systems using data acquired on each 2D MS/MS instrument. This work is then taken a step further by developing a high throughput experimentation method in which DESI is coupled to 2D MS/MS to analyze a moderate number of samples rapidly, automatically, and with high reproducibility.</p>

No description available.

Thèse numérisée par la Division de la gestion de documents et des archives de l'Université de Montréal.

Thèse numérisée par la Division de la gestion de documents et des archives de l'Université de Montréal

Indiana University-Purdue University Indianapolis (IUPUI) / Spore photoproduct lyase (SPL) is a radical SAM (S-adenosylmethionine) enzyme that is responsible for the repair of the DNA UV damage product 5-thyminyl-5,6-dihydrothymine (also called spore photoproduct, SP) in the early germination phase of bacterial endospores. SPL initiates the SP repair process using 5'-dA• (5'-deoxyadenosyl radical) generated by SAM cleavage to abstract the H6proR atom which results in a thymine allylic radical. These studies provide strong evidence that the TpT radical likely receives an H atom from an intrinsic H atom donor, C141 in B. subtilis SPL. I have shown that C141 can be alkylated in native SPL by iodoacetamide treatment indicating that it is accessible to the TpT radical. Activity studies demonstrate a 3-fold slower repair rate of SP by C141A which produces TpTSO2 - and TpT simultaneously with no lag phase observed for TpTSO2- formation. Additionally, formation of both products shows a Dvmax kinetic isotope effect (KIE) of 1.7 ± 0.2 which is smaller than the DVmax KIE of 2.8 ± 0.3 for the WT SPL reaction. Removal of the intrinsic H atom donor by this single mutation disrupts the rate-limiting process in the enzyme catalysis. Moreover, C141A exhibits ~0.4 turnover compared to the > 5 turnovers in the WT SPL reaction. In Y97 and Y99 studies, structural and biochemical data suggest that these two tyrosine residues are also crucial in enzyme catalysis. It is suggested that Y99 in B. subtilis SPL uses a novel hydrogen atom transfer pathway utilizing a pair of cysteinetyrosine residues to regenerate SAM. The second tyrosine, Y97, structurally assists in SAM binding and may also contribute to SAM regeneration by interacting with radical intermediates to lower the energy barrier for the second H-abstraction step.

No description available.

Le recours au plasma pour stériliser des dispositifs médicaux (DM) est un domaine de recherche ne datant véritablement que de la fin des années 1990. Les plasmas permettent, dans les conditions adéquates, de réaliser la stérilisation à basse température (≤ 65°C), tel qu’exigé par la présence de polymères dans les DM et ce contrairement aux procédés par chaleur, et aussi de façon non toxique, contrairement aux procédés chimiques comme, par exemple, l’oxyde d’éthylène (OEt). Les laboratoires du Groupe de physique des plasmas à l’Université de Montréal travaillent à l’élaboration d’un stérilisateur consistant plus particulièrement à employer les effluents d’une décharge N2-%O2 basse pression (2-8 Torrs) en flux, formant ce que l’on appelle une post-décharge en flux. Ce sont les atomes N et O de cette décharge qui viendront, dans les conditions appropriées, entrer en collisions dans la chambre de stérilisation pour y créer des molécules excitées NO*, engendrant ainsi l’émission d’une quantité appréciable de photons UV. Ceux-ci constituent, dans le cas présent, l’agent biocide qui va s’attaquer directement au bagage génétique du micro-organisme (bactéries, virus) que l’on souhaite inactiver. L’utilisation d’une lointaine post-décharge évite du même coup la présence des agents érosifs de la décharge, comme les ions et les métastables. L’un des problèmes de cette méthode de stérilisation est la réduction du nombre de molécules NO* créées par suite de la perte des atomes N et O, qui sont des radicaux connus pour interagir avec les surfaces, sur les parois des matériaux des DM que l’on souhaite stériliser. L’objectif principal de notre travail est de déterminer l’influence d’une telle perte en surface, dite aussi réassociation en surface, par l’introduction de matériaux comme le Téflon, l’acier inoxydable, l’aluminium et le cuivre sur le taux d’inactivation des spores bactériennes. Nous nous attendons à ce que la réassociation en surface de ces atomes occasionne ainsi une diminution de l’intensité UV et subséquemment, une réduction du taux d’inactivation. Par spectroscopie optique d’émission (SOE), nous avons déterminé les concentrations perdues de N et de O par la présence des matériaux dans le stérilisateur, ainsi que la diminution de l’émission UV en découlant. Nous avons observé que cette diminution des concentrations atomiques est d’autant plus importante que les surfaces sont catalytiques. Au cours de l’étude du phénomène de pertes sur les parois pour un mélange N2-%O2 nous avons constaté l’existence d’une compétition en surface entre les atomes N et O, dans laquelle les atomes d’oxygènes semblent dominer largement. Cela implique qu’au-delà d’un certain %O2 ajouté à la décharge N2, seuls les atomes O se réassocient en surface. Par ailleurs, l’analyse des courbes de survie bi-phasiques des micro-organismes a permis d’établir une étroite corrélation, par lien de cause à effet, entre la consommation des atomes N et O en surface et la diminution du taux d’inactivation des spores dans la première phase. En revanche, nous avons constaté que notre principal agent biocide (le rayonnement ultraviolet) est moins efficace dans la deuxième phase et, par conséquent, il n’a pas été possible d’établir un lien entre la diminution des concentrations et le taux d’inactivation de cette phase-là. / The use of plasmas to sterilize medical devices (MDs) is a research field, which really started only at the end of the 90’s. Plasmas under adequate conditions allow achieving low-temperature (≤ 65°C) sterilization, as required by MDs made from polymers, in contrast to heat-driven sterilization methods, and provide a non-toxic method, in contrast to chemical processes such as performed, for example, with ethylene oxide (EtO). The Groupe de physique des plasmas laboratories at Université de Montréal is working on the design and testing of a sterilizer, which has the peculiarity of utilizing the species outflowing from a N2-%O2 discharge at reduced pressure (2-8 Torrs), which is called a plasma flowing-afterglow. It is the N and O atoms of this discharge mixture that, under appropriate conditions, interact in the sterilization chamber to form NO* excited molecules, generating a significant level of UV photons. These are, in the present case, the actual biocidal agent which will create lethal lesions on the genetic material of the microorganisms (bacteria, viruses) that should be inactivated. Using a flowing late afterglow instead of the discharge itself enables us to avoid the presence of the erosive agents of the discharge (ions, metastable-state particles). A major problem of this sterilization method is the reduction in the concentration of NO* molecules resulting from the losses of the N and O atoms on the surfaces of the MD materials that we want to sterilize. These radicals are, in fact, well-known to interact with surfaces and recombine on them. The main aim of our work is to determine the loss level of such atoms following their surface recombination on materials such as Teflon, stainless steel, aluminum and copper and the corresponding influence of such losses on the inactivation rate of bacterial spores. We can expect that surface recombination of these atoms leads to a reduction in the UV emission intensity and, as a result, in a reduction in the inactivation rate. Using optical emission spectroscopy (OES), we have determined the loss of N and O concentrations resulting from the presence of various materials in the sterilizer chamber as well as the corresponding decrease in UV emission intensity. We have observed that this reduction in atomic concentrations increases with the catalytic properties (recombination coefficient) of these materials. While examining the surface recombination phenomenon on these various materials, we have noticed a competition between the surface recombination of N and O atoms where the latter appear to play the main role. This implies that above a certain percentage of O2 added to N2, only the O atoms do recombine on these surfaces. On the other hand, the analysis of the bi-phasic survivor curves has enable us to show a strong correlation between the consumption of N and O atoms on surfaces and the reduction in the inactivation rate coefficient in the first phase of the survivor curve. We have also observed that our main biocidal agent is less efficient in the second phase of the survivor curve and, as a result, it was not possible to make a connection between the reduction in N and O atom concentration and the inactivation rate of the second phase.