Bread wheat (Triticum aestivum L.) is one of the most important cereal crops grown in the world. It has great importance because it constitutes a major source of carbohydrate for more than one third of the world’s population (Budak et al., 2013). In the last three decades, drought conditions are becoming more widespread in wheat production areas including Europe, Australia and Asia, and it is considered a major cause of reduced wheat growth and productivity in most developing countries with semi-arid climates. Drought constitutes the most important threat for wheat production in Iraq and especially for the Kurdistan Regional Governate owing to the limited source of water during at least some part of the growing period. Because wheat is considered a staple food and has economic importance for the Kurdistan Regional Government research is needed to determine the production capacity of Iraqi wheat varieties under drought stress and the potential for the maximization of the drought tolerance response. The soil moisture holding capacity of the intended growing medium was measured gravimetrically in pots with and without wheat plants and correlated with the soil capacitance measured using a TDR Theta Probe (Delta-T Devices). This was used to determine the available water content of the soil (AWC) and to control and manage the watering regimes during drought studies. The results of a study of the response of different cultivars of Iraqi wheat (Triticum aestivum L.) to watering regimes of 70% and 50% showed that drought stress had a significant effect on the biomass and yield traits especially tiller number and stem bundle weight compared to normal conditions. The highest significant difference was observed for cv. Tamooz 2 in comparison to Adana 99, but there was a little difference between cvs. Rizgary and Sham 6. The effect of the exogenous application of salicylic acid (SA) and molybdenum (Mo) on drought tolerance of cvs. Tamooz 2 and Adana 99, showed that Tamooz 2 had higher values for growth characteristics and higher yield potential when sprayed with a lower concentration of SA (1.44 mM) under well-watered conditions in comparison with Adana 99. The effect of spraying variety Tamooz 2 with SA at different growth stages indicated that biomass production and yield components (the number of spikes/pot, grain dry weight and average 1000 grain dry weight) significantly increased at both stem+flower as well as leaf+stem+flower sprayings for plants subjected to drought. Also, SA treatments at stem extension and flowering had a positive effect on the up-regulation of the drought response gene CBF/DREB under drought stress conditions. These findings indicate that agronomic treatments with exogenous applications of salicylic acid and molybdenum could help to reduce the effects of drought in the field.

Les gènes RUNX1 et CBFB codent pour les sous-unités du core binding factor (CBF), facteur de transcription hétérodimérique essentiel de l’hématopoïèse définitive. La dérégulation du CBF est l'une des anomalies les plus fréquemment rencontrées dans les hémopathies malignes. Puisque la perturbation seule du CBF est insuffisante au développement d’une leucémie aiguë myéloïde (LAM), les LAM impliquant le CBF sont considérées comme des modèles de leucémogénèse multi-étapes, nécessitant la coopération d’anomalies génétiques additionnelles.Dans ce travail, nous nous sommes intéressés aux LAM de type CBF, caractérisées soit par une t(8;21)/fusion RUNX1-RUNX1T1 soit par une inv(16)/fusion CBFB-MYH11, ainsi qu’aux LAM avec mutations germinales de RUNX1 (définissant la thrombopénie familiale avec prédisposition aux leucémies aiguës ou FPD/AML). Afin d’identifier des anomalies additionnelles, nous avons étudié les prélèvements de patients atteints de LAM CBF inclus dans les essais français ELAM02 (0-18 ans) et CBF2006 (18-60 ans) par séquençage à haut débit (n=215) et single nucleotide polymorphism-array (n=198). Les échantillons de 25 individus atteints de FPD/AML (issus de 15 familles), diagnostiqués entre 2005 et 2014, ont également été séquencés au stade thrombopénique et au moment de la transformation en leucémie aiguë.Dans les LAM CBF, les mutations activatrices des voies tyrosines kinases (TK) sont les événements les plus fré-quents quel que soit le sous-type de LAM CBF [t(8;21) ou inv(16)], comme cela a déjà été rapporté dans d’autres études. En revanche, les mutations affectant les gènes du remodelage chromatinien ou du complexe de la cohésine sont identifiées à des fréquences élevées (41% et 18% respectivement) dans les LAM avec t(8;21) tandis qu’elles sont pratiquement absentes dans les LAM avec inv(16). Dans les LAM avec t(8;21), la coexistence de ces mutations avec les mutations de type TK est associée à un pronostic défavorable suggérant une synergie entre ces événements. D'autres événements fréquemment retrouvés incluent les mutations de ZBTB7A et DHX15 dans les LAM avec t(8;21) (20% et 6% respectivement) et les délétions/mutations de FOXP1 dans les LAM avec inv(16) (7%). Enfin, nous avons décrit la perturbation de CCDC26 comme une possible lésion associée à une signalisation aberrante des TK dans les LAM CBF (4,5% des cas).Dans les FPD/AML, l'analyse mutationnelle a révélé l'acquisition d'un deuxième événement impliquant RUNX1 chez tous les patients ayant développé une LAM. Ce deuxième événement correspondait soit à une mutation somatique du second allèle de RUNX1 soit à la duplication de la mutation germinale de RUNX1 (par perte d'hétérozygotie sans anomalie du nombre de copies ou trisomie 21 acquise). En pratique clinique, cela suggère que la présence de deux mutations différentes de RUNX1 ou d'une seule mutation avec un ratio allélique supérieur à 50% chez un patient atteinte de LAM doit alerter sur la possibilité d’un syndrome FPD/AML sous-jacent. / RUNX1 and CBFB encode subunits of the core binding factor (CBF), a heterodimeric transcription factor required for the establishment of definitive hematopoiesis. Deregulation of the CBF is one of the most frequent aberrations in hematological malignancies. Since CBF disruption alone is insufficient to induce acute myeloid leukemia (AML) on its own, AML with CBF involvement is considered as a model of multistep leukemogenesis requiring additional genetic aberrations.Here, we focused on acute myeloid leukemia (AML) with t(8;21)/RUNX1-RUNX1T1 fusion and AML with inv(16)/CBFB-MYH11 fusion, reported together as CBF AML, as well as AML with germline RUNX1 mutation (defining the familial platelet disorder with propensity to develop leukemia or FPD/AML).In order to explore additional genomic aberrations, we performed comprehensive genetic profiling in CBF AML patients enrolled in the French trials ELAM02 (0-18 years) and CBF2006 (18-60 years) using both high-throughput sequencing (n=215) and single nucleotide polymorphism-array (n=198). In addition, we sequenced samples from 25 individuals with FPD/AML (15 pedigrees) diagnosed between 2005 and 2014 at thrombocyto-penic stage and during leukemic progression.In CBF AML, mutations in genes activating tyrosine kinase (TK) signaling were frequent in both subtypes as previously described by others. By contrast, we found mutations in genes encoding chromatin modifiers or members of the cohesin complex with high frequencies in t(8;21) AML (41% and 18% respectively) while they were nearly absent in inv(16) AML. Interestingly, such mutations were associated with a poor prognosis in patients with TK mutations suggesting synergic cooperation between these events. Other events included ZBTB7A and DHX15 mutations in t(8;21) AML (20% and 6% respectively) and FOXP1 deletions or truncating mutations in inv(16) AML (7%). Finally, we described CCDC26 disruption as a possible new lesion associated with aberrant TK signaling in this particular subtype of leukemia (4.5% of CBF AML).In FPD/AML, mutational analysis revealed the acquisition of a second event involving RUNX1 in all patients with AML including somatic mutation of the second allele or duplication of the germline RUNX1 mutation through copy-neutral loss of heterozygosity and trisomy 21. In clinical practice, we suggest that the occurrence of two different RUNX1 mutations or a single RUNX1 mutation with a variant allele frequency higher than 50% in a patient with AML should alert about the possibility of FPD/AML.

Indiana University-Purdue University Indianapolis (IUPUI) / Abiotic stresses, such as cold, are serious agricultural problems resulting in substantial crop and revenue losses. Soybean (Glycine max) is an important worldwide crop for food, feed, fuel, and other products. Soybean has long been considered to be cold-intolerant and incapable of cold acclimation. In contrast to these reports, this study demonstrates that cold acclimation improved freezing tolerance in the domestic soybean cultivar ‘Williams 82’ with 50% enhancement of freezing tolerance after 5.2 +\- 0.6 days of cold exposure. Decreases in light dependent photosynthetic function and efficiency accompanied cold treatment. These decreases were due to an increase in photon dissipation likely driven by a decrease in plastoquinone (PQ) pool size limiting electron flow from photosystem II (PSII) to photosystem I (PSI). Cold-induced damage to operational photosynthesis began at 25 minutes of cold exposure and maximal photosynthesis was disrupted after 6 to 7 hours of cold exposure. Cold exposure caused severe photodamage leading to the loss of PSII reaction centers and photosynthetic efficiency. Comparisons of eight cultivars of G. max demonstrated a weak correlation between cold acclimation and northern cultivars versus southern cultivars. In the non-domesticated soybean species Glycine soja, the germination rate after cold imbibition was positively correlated with seedling cold acclimation potential. However, the overall cold acclimation potential in G. soja was equal to that of domestic soybean G. max reducing the enthusiasm for the “wild” soybean as an additional source of genetic diversity for cold tolerance. Despite being relatively cold intolerant, the soybean genome possesses homologs of the major cold responsive CBF/DREB1 transcription factors. These genes are cold-induced in soybean in a similar pattern to that of the cold tolerant model plant species Arabidopsis thaliana. In Arabidopsis, EIN3, a major component of the ethylene signaling pathway, is a negative transcriptional regulator of CBF/DREB1. In contrast to AtEIN3 transcript levels which do not change during cold treatment in Arabidopsis, we observed a cold-dependent 3.6 fold increase in GmEIN3 transcript levels in soybean. We hypothesized that this increase could prevent effective CBF/DREB1 cold regulation in soybean. Analysis of our newly developed cold responsive reporter (AtRD29Aprom::GFP/GUS) soybean transgenic lines demonstrated that inhibition of the ethylene pathway via foliar sprays (AVG, 1-MCP, and silver nitrate) resulted in significant cold-induced GUS activity. Transcripts of GmEIN3A;1 increased in response to ethylene pathway stimulation (ACC and ethephon) and decreased in response to ethylene pathway inhibition in the cold. Additionally, in the cold, inhibition of the ethylene pathway resulted in a significant increase in transcripts of GmDREB1A;1 and GmDREB1A;2 and stimulation of the ethylene pathway led to a decrease in GmDREB1A;1 and GmDREB1B;1 transcripts. To assess the physiological effects of these transcriptional changes; electrolyte leakage, lipid oxidation, free proline content, and photosynthesis were examined. Improvement in electrolyte leakage, a measure of freezing tolerance, was seen only under silver nitrate treatment. Only 1-MCP treatment resulted in significantly decreased lipid oxidation. Transcripts for CBF/DREB1 downstream targets (containing the consensus CRT/DRE motifs) significantly decreased in plants treated with ethylene pathway stimulators in the cold; however, ethylene pathway inhibition generally produced no increase over basal cold levels. To identify if GmEIN3A;1 was capable of binding to GmDREB1 promoters, the negative regulator GmEIN3A;1 and the positive regulator GmICE1A were cloned and expressed in Escherichia coli (E. coli). Preliminary binding results indicated that GmEIN3A;1 can bind to a double stranded section of the GmDREB1A;1 promoter containing putative EIN3 and ICE1 binding sites. GmICE1A is capable of binding to the same section of the GmDREB1A;1 promoter, though only when single stranded. Additional experiments will be required to demonstrate that GmEIN3A;1 and GmICE1A are capable of binding to the GmDREB1A;1 promoter and this work provides the tools to answer these questions. Overall, this work provides evidence that the ethylene pathway transcriptionally inhibits the CBF/DREB1 pathway in soybean through the action of GmEIN3A;1. Yet when GmCBF/DREB1 transcripts are upregulated by ethylene pathway inhibition, no consistent change in downstream targets was observed. These data indicate that the limitation in cold tolerance in soybean is due to a yet unidentified target downstream of CBF/DREB1 transcription.

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Background: Ischemic stroke ranks as the third major cause of clinical mortality and the leading cause of handicap in adults. Each year, stroke occurs in about 30,000 Swedes. The severity of an acute ischemic stroke depends mainly on the degree and duration of local cerebral blood flow (lCBF) reduction. Prompt reperfusion improves neurological deficits, spontaneous electrical activity, energy metabolism, cerebral protein synthesis (CPS), and tissue repair, among which cell proliferation (neurogenesis, gliosis) and revascularization (angiogenesis) may have important functional and therapeutic implications. Aims of the thesis: (1) To establish the photothrombotic ring stroke(PRS) model with late spontaneous reperfusion in adult mice; (2) To explore angiogenesis and neurogenesis in adult brain after focal cerebral ischemia. Materials and Methods: The PRS model in C57 BL adult mice and the middle cerebral artery suture occlusion (MCAO) model in adult Wistar rats were used. The 5-bromodeoxyuridine (BrdU) was delivered into animal after stroke induction to label DNA duplication. CBF, CPS and adenosine triphosphate (ATP) were measured by laser-Doppler flowmetry (LDF), [14C]–Iodoantipyrine and [3H]-Leucine double tracer autoradiography, and bioluminescence, respectively. Immunocytochemistry / immunofluoresence were performed to detect different proteins. The cell marker colocalization was analyzed by three-dimension (3-D) confocal. The cell counting was performed with a stereological counting system. Results: The PRS model was established in adult mice by irradiating the exposed skull with a 514.5 nm argon laser ring beam (3 mm diameter, 0.21 mm thick) at an intensity of 0.65 W/cm2 for 60s, with concurrent erythrosin B (4.25 mg/kg) intravenous infusion for 15s. The central cortical region within the ring locus was progressively encroached by an annular ring-shaped perfusion deficit, where lCBF LDF declined promptly to 43% of the baseline value at 30 min post irradiation. The lCBF-IAP amounted to 46-17-58 ml/100g/min, where CPS varied from 57-38-112% at 4h-48h-7days post ischemia. ATP declined at 4h, achieved its maximum level at 48h and was markedly reduced at 7 days postischemia. Morphologically, at 4h some neurons in the region at-risk appeared swollen, at 48h the majority were severely swollen, eosinophilic and pyknotic. Tissue morphology became partly restored at 7 days post stroke, when numerous cortical cells were immunolabeled by BrdU or the mitosis-specific marker phosphorylated histone H3 (Phos-H3). Some of these cells were even doubly immunopositive to the neuron-specific marker Neu N and the astrocyte marker GFAP, as analyzed by 3-D confocal. In adult rats exposed to MCAO, widespread BrdU-immunolabeled cells appeared in the cortex, ipsilateral striatum and dentate gyrus of the hippocampus. Some of which were doubleimmunolabeled by the neuron specific markers Map-2, β-tubulin III and Neu N as analyzed by 3-D confocal. As early as 24h postischemia, BrdU-immunopositive endothelial cells were aligned as microvessels, some of which exhibited distinguishable lumens in the ischemic boundary zone, where VEGF-A, B, C proteins and their receptors flt-1, fik-1, flt-4 were overexpressed at 72h after MCAO. Conclusion: PRS model in adult mice elicits a dynamic deterioration and then restoration of local CBF, CPS, ATP and tissue morphology in the spontaneously reperfused cerebral cortex at 7d after stroke, where cortical neurogenesis and gliosis occurred. In adult rats with MCAO, neurogenesis occurred at 30 and 60d in the penumbral cortex and striatum. Angiogenesis occurred as early as 24h, which contributed to the spontaneous reperfusion frequently observed in this setting of acute ischemic stroke.

Many cerebral diseases are associated with abnormal cerebral hemodynamics and impaired cerebral autoregulation (CA). CA is a mechanism to maintain cerebral blood flow (CBF) stable when mean arterial pressure (MAP) fluctuates. Evaluating these abnormalities requires direct measurements of cerebral hemodynamics and MAP. Several near-infrared diffuse optical instruments have been developed in our laboratory for hemodynamic measurements including near-infrared spectroscopy (NIRS), diffuse correlation spectroscopy (DCS), hybrid NIRS/DCS, and dual-wavelength DCS flow-oximeter. We utilized these noninvasive technologies to quantify CBF and cerebral oxygenation in different populations under different physiological conditions/manipulations. A commercial finger plethysmograph was used to continuously monitor MAP. For investigating the impact of obstructive sleep apnea (OSA) on cerebral hemodynamics and CA, a portable DCS device was used to monitor relative changes of CBF (rCBF) during bilateral thigh cuff occlusion. Compared to healthy controls, smaller reductions in rCBF and MAP following cuff deflation were observed in patients with OSA, which might result from the impaired vasodilation. However, dynamic CAs quantified in time-domain (defined by rCBF drop/MAP drop) were not significantly different between the two groups. We also evaluated dynamic CA in frequency-domain, i.e., to quantify the phase shifts of low frequency oscillations (LFOs) at 0.1 Hz between cerebral hemodynamics and MAP under 3 different physiological conditions (i.e., supine resting, head-up tilt (HUT), paced breathing). To capture dynamic LFOs, a hybrid NIRS/DCS device was upgraded to achieve faster sampling rate and better signal-to-noise. We determined the best hemodynamic parameters (i.e., CBF, oxygenated and total hemoglobin concentrations) among the measured variables and optimal physiological condition (HUT) for detecting LFOs in healthy subjects. Finally, a novel dual-wavelength DCS flow-oximeter was developed to monitor cerebral hemodynamics during HUT-induced vasovagal presyncope (VVS) in healthy subjects. rCBF was found to have the best sensitivity for the assessment of VVS among the measured variables and was likely the final trigger of VVS. A threshold of ~50% rCBF decline was observed which can completely separate subjects with or without presyncope, suggesting its potential role for predicting VVS. With further development and applications, NIRS/DCS techniques are expected to have significant impacts on the evaluation of cerebral hemodynamics and autoregulation.

The CCAAT binding-factor (CBF) is a transcriptional activator conserved in eukaryotes. The CBF in Saccharomyces cerevisiae is a multimeric heteromer termed the Hap2/3/4/5 complex. Hap4, which contains the activation domain of the complex, is also the regulatory subunit and is known to be transcriptionally controlled by carbon sources. However, little is known about Hap4 regulation. In this report, I identify mechanisms by which Hap4 is regulated, including: (1) transcriptional regulation via two short upstream open reading frames (uORFs) in the 5' leader sequence of HAP4 mRNA; (2) proteasome-dependent degradation of Hap4; and (3) identification of two negative regulators of HAP4 expression, CYC8 and SIN4. I also report differential patterns of Hap4 cellular localization which depends on (1) carbon sources, (2) abundance of Hap4 protein, and (3) presence or absence of mitochondrial DNA (mtDNA).

The use of unmanned aerial vehicles (UAV), so-called drones, has been growingrapidly in the last decade. Today, they are used for, among other things, monitoring missions and inspections of places that are difficult for people to access. Toefficiently and robustly execute these types of missions, a swarm of drones maybe used, i.e., a collection of drones that coordinate together. However, this introduces new requirements on what solutions are used for control and navigation. Two important aspects of autonomous navigation of drone swarms are formationcontrol and collision avoidance. To manage these problems, we propose four different solution algorithms. Two of them use leader-follower control to keep formation, Artificial PotentialField (APF) for path planning and Control Barrier Function (CBF)/ExponentialControl Barrier Function (ECBF) to guarantee that the control signal is safe i.e.the drones keep the desired safety distance. The other two solutions use an optimal control problem formulation of a motion planning problem to either generate open-loop or closed-loop trajectories with a linear quadratic regulator (LQR)controller for trajectory following. The trajectories are optimized in terms of timeand formation keeping. Two different controllers are used in the solutions. Oneof which uses cascade PID control, and the other uses a combination of cascadePID control and LQR control. As a way to test our solutions, a scenario is created that can show the utilityof the presented algorithms. The scenario consists of two drone swarms that willtake on different missions executed in the same environment, where the droneswarms will be on a direct collision course with each other. The implementedsolutions should keep the desired formation while smoothly avoiding collisionsand deadlocks. The tests are conducted on real UAVs, using the open sourceflying development platform Crazyflie 2.1 from Bitcraze AB. The resulting trajectories are evaluated in terms of time, path length, formation error, smoothnessand safety.  The obtained results show that generating trajectories from an optimal control problem is superior compared to using APF+leader-follower+CBF/ECBF. However, one major advantage of the last-mentioned algorithms is that decision making is done at every time step making these solutions more robust to disturbancesand changes in the environment.

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