Coordination of mitosis and cytokinesis is crucial to generate healthy daughter cells with equal amounts of genetic and cytoplasmic materials. In the fission yeast Schizosaccharomyces pombe, an evolutionarily conserved Cdc14-like phosphatase (Clp1) functions to couple mitosis and cytokinesis by antagonizing CDK activity. The activity of Clp1 is thought to be regulated in part by its subcellular localization. It is sequestered in the nucleolus and the spindle pole body (SPB) during interphase. Upon mitotic entry, it is released into the cytoplasm and localized to the kinetochores, the actomyosin ring, and the mitotic spindle to carry out distinct functions. It is not clear how Clp1 is released from the nucleolus, however, once released, a conserved signaling pathway termed Septation Initiation Network (SIN) functions to retain Clp1 in the cytoplasm until completion of cytokinesis. The SIN and Clp1 function together in a positive feedback loop to promote each other’s activity. That is, the SIN promotes cytoplasmic retention of Clp1, and cytoplasmic Clp1 antagonizes CDK activity and reverses CDK inhibition on the SIN pathway to promote its function and activity. However, at the start of this thesis, the mechanism by which the SIN regulated Clp1 was unknown. The SIN pathway is also required to promote constriction of the actomyosin ring, and the septum formation. However, its downstream targets were still uncharacterized. In two separate studies, we studied how Clp1 is released from the nucleolus at mitotic entry and how the SIN kinase Sid2 acts to retain Clp1 in the cytoplasm. We identified several Sid2 candidate substrates, and revealed other functions of the SIN pathway in coordinating mitotic events.

Several cell cycle events require specific forms of the cyclin-CDK complexes. It has been known for some time that cyclins not only contribute by activating the CDK but also by choosing substrates and/or specifying the location of the CDK holoenzyme. There are several examples of B-type cyclins identifying certain peptide motifs in their specific substrates through a conserved region in their structure. Such interactions were not known for the G1 class of cyclins, which are instrumental in helping the cell decide whether or not to commit to a new cell cycle, a function that is non-redundant with B-type cylins in budding yeast. In this dissertation, I have presented evidence that some G1 cyclins in budding yeast, Cln1/2, specifically identify substrates by interacting with a leucine-proline rich sequence different from the ones used by B-type cyclins. These “LP” type docking motifs determine cyclin specificity, promote phosphorylation of suboptimal CDK sites and multi-site phosphorylation of substrates both in vivo and in vitro. Subsequently, we have discovered the substrate-binding region in Cln2 and further showed that this region is highly conserved amongst a variety of fungal G1 cyclins from budding yeasts to molds and mushrooms, thus suggesting a conserved function across fungal evolution. Interestingly, this region is close to but not same as the one implicated in B-type cyclins to binding substrates. We discovered that the main effect of obliterating this interaction is to delay cell cycle entry in budding yeast, such that cells begin DNA replication and budding only at a larger than normal cell size, possibly resulting from incomplete multi-site phosphorylation of several key substrates. The docking-deficient Cln2 was also defective in promoting polarized bud morphogenesis. Quite interestingly, we found that a CDK inhibitor, Far1, could regulate the Cln2-CDK1 activity partly by inhibiting the Cln2-substrate interaction, thus demonstrating that docking interactions can be targets of regulation. Finally, by studying many fungal cyclins exogenously expressed in budding yeast, we discovered that some have the ability to make the CDK hyper-potent, which suggests that these cyclins confer special properties to the CDK. My work provides mechanistic clues for cyclinspecific events during the cell cycle, demonstrates the usefulness of synthetic strategies in problem solving and also possibly resolves long-standing uncertainties regarding functions of some cell cycle proteins.

A cell integrates mitogenic signals received at the plasma membrane with intracellular biochemical changes to direct the events of cell division. Oocytes from Xenopus laevis offer a system that allows molecular dissection of pathways controlling cell growth and division in response to extracellular cues. Xenopus oocytes, physiologically arrested in a G2 like state, respond to the hormone progesterone to reinitiate meiosis and mature into a fertilizable egg. Signals received at the oocyte membrane induce translation of dormant maternal mRNAs that not only drive meiotic entry but also maintain the cell cycle arrest in an egg. A major pathway controlling the translation of these mRNAs is cytoplasmic polyadenylation, facilitated by the Cytoplasmic Polyadenylation Element Binding protein (CPEB) through cis-acting elements in their 3'untranslated regions (3'UTRs). Cytoplasmic polyadenylation requires the phosphorylation of serine174 on CPEB by Aurora-A as well as the translation of a hitherto unknown mRNA. The transcript of the RINGO/Spy gene is a putative candidate for this unknown upstream regulator of CPEB function. RINGO/Spy mRNA is translationally repressed in immature oocytes by a ribonucleoprotein (RNP) complex consisting of the repressor Pumilio-2, the putative activator Deleted in Azoospermia-like (DAZl) and embryonic poly A binding protein (ePAB). Progesterone signaling leads to the dissociation of Pumilio-2 from the mRNP and the ensuing RINGO/Spy protein synthesis, in turn, promotes cytoplasmic polyadenylation and oocyte maturation. Pumilio and its associated proteins, such as Drosophila Brain tumor (Brat) and DAZl, in addition to their cytoplasmic roles have ill-defined functions within the nucleus. We detected DAZl within the nucleoli of telomerase-immortalized human retinal pigment epithelial (RPE) cells in interphase and on acrocentric chromosomes during mitosis. DAZl colocalizes with the RNA polymerase I associated Upstream Binding transcription Factor (UBF), most likely through pre-ribosomal RNA and is a likely component of the Nucleolar Organization Region (NOR). Stably knocking down DAZl in RPEs using short hairpin RNAs results in loss of nucleolar segregation, the physiological outcome of which is under investigation. These preliminary findings indicate an additional role for DAZl within the nucleolus, one likely to be independent from cytoplasmic translational control.

DNA damage induces mitotic exit delays through a process that requires the spindle assembly checkpoint (SAC), which blocks the metaphase to anaphase transition in the presence of unaligned chromosomes. Using time-lapse confocal microscopy in syncytial Drosophila embryos, we show that DNA damage leads to arrest during prometaphase and anaphase. In addition, functional GFP fusions to the SAC components MAD2 and Mps1, and the SAC target Cdc20 relocalize to kinetochore through anaphase arrest, and a null mad2mutation blocks damage induced prometaphase and anaphase arrest. We also show that the DNA damage signaling kinase Chk2 is required for damage induced metaphase and anaphase arrest, and that a functional GFP-Chk2 fusion localizes to kinetochores and centrosomes through mitosis. In addition, in the absence of Chk2, we find that DNA damage sufficient to fragment centromere DNA does not delay mitotic exit. We conclude that DNA damage signaling through Chk2 triggers Mad2-dependent delays in mitotic progression, both before or after the metaphase-anaphase transition.

Thesis (Ph.D. in Biophysics & Genetics, Program in Molecular Biology) -- University of Colorado Denver, 2007. / Typescript. Includes bibliographical references (leaves 90-98). Free to UCD affiliates. Online version available via ProQuest Digital Dissertations;

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The studies presented in this thesis addressed mainly two aspects of Piwi-interacting RNA (piRNA) biology in the Drosophilagermline. We investigated the role of the piRNA pathway in embryonic axis specification. piRNAs mediate silencing of retrotransposons and the Stellate locus. Mutations in the Drosophila piRNA pathway genes armitage and aubergine disrupt embryonic axis specification, triggering defects in microtubule polarization and asymmetric localization of mRNA and protein determinants in the developing oocyte. Mutations in the ATR/Chk2 DNA damage signal transduction pathway dramatically suppress these axis specification defects, but do not restore retrotransposon or Stellatesilencing. Furthermore, piRNA pathway mutations lead to germline-specific accumulation of γ-H2Av foci characteristic of DNA damage. We conclude that piRNA based gene silencing is not required for axis specification, and that the critical developmental function for this pathway is to suppress DNA damage signaling in the germline. We have also identified a new member of the piRNA pathway. We show that mutations in rhino, which encodes a rapidly evolving Heterochromatin Protein 1 (HP1) chromo box protein, lead to germline specific DNA break accumulation, trigger Chk2 kinase dependent defects in axis specification, and disrupt germline localization of Piwi proteins. Mutations in rhino and the piRNA pathway gene armitage disrupt silencing of all major transposon families, but do not alter expression of euchromatic or heterochromatic protein coding genes. Deep sequencing studies show that rhino mutations significantly reduce or eliminate anti-sense piRNAs derived from the majority of transposable elements in the Drosophila genome, and lead to a dramatic reduction in piRNAs derived from major piRNA production clusters on chromosomes 2R and 4. Rhino protein localizes to distinct nuclear foci, and associates with the chromosome 2R and 4 clusters by chromatin immunoprecipitation. The Rhino HP1 homologue is therefore required for piRNA biogenesis, transposon silencing, and maintenance of germline genome integrity.

Orientador: Albina Messias de Almeida Milani Altemani / Tese (doutorado) - Universidade Estadual de Campinas, Faculdade de Ciencias Medicas / Made available in DSpace on 2018-08-06T19:08:01Z (GMT). No. of bitstreams: 1 Freitas_LeandroLuizLopesde_D.pdf: 4064664 bytes, checksum: d04222e584211904229193f280c217a9 (MD5) Previous issue date: 2006 / Resumo: O adenoma pleomórfico (AP) é a neoplasia mais freqüente das glândulas salivares e o carcinoma ex-adenoma pleomórfico (CXAP) é a sua forma de transformação maligna mais comum. Os trabalhos da literatura com séries exclusivas de CXAP são poucos e englobam, em sua maioria, carcinomas já em estádios avançados. Raros são os estudos realizados exclusivamente com tumores que apresentam os dois componentes (benigno e maligno) e em fases iniciais de malignização. Alterações nos genes p53 e c-erbB-2 parecem ser as principais vias envolvidas nesta transformação. Estas proteínas, além do marcador de proliferação celular Ki-67, podem ser importantes critérios no diagnóstico do CXAP, especialmente em sua fase precoce. O objetivo deste trabalho foi avaliar retrospectivamente a expressão imunoistoquímica de marcadores celulares (p53, c-erbB-2, Ki-67 e bcl-2, uma proteína antiapoptótica) em CXAP em diferentes fases de malignização (4 intracapsulares, 4 minimamente invasivos e 7 francamente invasivos), nas áreas benignas e malignas e em AP que não sofreram malignização (17 casos - grupo controle). A parótida foi a glândula mais acometida em ambos os grupos (CXAP 53%, grupo controle 88%), envolvendo mais mulheres que homens. A idade média dos pacientes com CXAP em qualquer fase evolutiva (63,3 anos) foi maior que no grupo controle (35,6 anos). A proteína p53 foi mais expressa nas áreas malignas (em média 35,71% nos CXAP precoces e 8,11% nos CXAP francamente invasivos, versus 12,76% e 4,58% nas áreas benignas, respectivamente) e principalmente em células luminais, enquanto os menores valores foram encontrados no grupo controle (1,71%). Fato semelhante ocorreu com o índice mitótico e a expressão de Ki-67. A expressão de c-erbB-2 foi observada quase que exclusivamente em células malignas com diferenciação luminal. A proteína bcl-2 teve positividade fraca e focal. Concluímos que as proteínas p53 e c-erbB-2 parecem estar envolvidas na transformação maligna do AP, já em fases precoces, sendo critérios mais objetivos do que a simples avaliação morfológica para o diagnóstico dos CXAP intracapsulares / Abstract: Pleomorphic adenoma (PA) is the commonest salivary gland tumor, and carcinoma ex pleomorphic adenoma (CXPA) is its most frequent malignant counterpart. There are few studies centering on CXPA only and most have been performed in frankly invasive carcinomas. Series of CXPA containing both morphological components (adenoma and carcinoma) at an early stage of carcinomatous transformation are extremely rare. p53 and c-erbB-2 appear to be the most important genes involved in this malignant change. These proteins, and the proliferative index marker Ki-67, could be valuable criteria for diagnosis of CXPA, specially at an early stage. The aim of this study was to assess retrospectively the expression of cell markers (p53, c-erbB-2, Ki-67 and bcl-2, an antiapoptotic protein) in CXPA in different phases of malignant progression (4 intracapsular, 4 minimally invasive and 7 frankly invasive), in benign and malignant areas and in PA without malignant transformation (17 cases - control group). The parotid was the most frequently involved gland in both groups (CXPA: 53%, control group: 88%), and women were more affected than men. The average age in the CXPA group (63.3 years) at any stage was higher than in the control group (35.6 years). p53 expression was highest in malignant areas (mean 35.71% in early CXPA and 8.11% in frankly invasive CXPA, versus 12.76% and 4.58% in benign areas, respectively) and mainly in luminal cells, while the lowest values (1.71%) occurred in the control group. Similar findings were obtained with the mitotic index and Ki-67 expression. c-erbB-2 positivity was observed almost exclusively in malignant cells of the luminal type. bcl-2 expression was weak and focal. In conclusion, both p53 and c-erbB-2 proteins appear to be involved in malignization of PA since an early stage, thus providing criteria more objetive than simple morphological evaluation for diagnosis of intracapsular CXPA / Doutorado / Anatomia Patologica / Doutor em Ciências Médicas

Submitted by Renata Lopes (renatasil82@gmail.com) on 2016-10-31T11:38:11Z No. of bitstreams: 1 mariliadepaduadornelascorrea.pdf: 1683962 bytes, checksum: 535fc7956722559af7dce14b15336986 (MD5) / Approved for entry into archive by Adriana Oliveira (adriana.oliveira@ufjf.edu.br) on 2016-12-15T12:56:51Z (GMT) No. of bitstreams: 1 mariliadepaduadornelascorrea.pdf: 1683962 bytes, checksum: 535fc7956722559af7dce14b15336986 (MD5) / Made available in DSpace on 2016-12-15T12:56:51Z (GMT). No. of bitstreams: 1 mariliadepaduadornelascorrea.pdf: 1683962 bytes, checksum: 535fc7956722559af7dce14b15336986 (MD5) Previous issue date: 2007-12-14 / O Carcinoma basocelular (CBC) é o câncer mais comum em humanos, tendo predileção pela cabeça e pescoço, e sua incidência vem aumentando nos últimos anos. Estudos utilizando recursos da biologia molecular e genética, associados à histomorfologia, permitem a identificação de fatores de risco no desenvolvimento de lesões mais recorrentes e agressivas e propõem métodos mais eficazes de prevenção. O objetivo foi correlacionar a expressão dos marcadores de apoptose (p53 e Bcl-2) e proliferação celular (Ki-67 e PCNA) com os indicadores histológicos de gravidade do tumor. Foram estudadas cinco amostras de cada uma das formas nodular, morfeiforme e superficial e um grupo controle com três pacientes livres de lesão. O teste de Mann Whitney foi utilizado na comparação da expressão destes marcadores com a forma de apresentação do CBC. A marcação do Bcl-2 foi expressiva nos CBCs ditos agressivos. A variante morfeiforme foi a que mais o expressou, seguida pela nodular. Dos tumores estudados, 66,7% (dez) expressaram fortemente o p-53 e, nos controles, um indivíduo o expressou fracamente na camada basal. Nossos resultados mostram maior expressão do Ki-67 no CBC nodular e superficial, sem expressão nos controles. O PCNA mostrou forte marcação em todos os tipos de tumores e nos controles. O Bcl-2 e a p-53 apresentam tendência para diagnosticar gravidade do Carcinoma Basocelular, e o Ki-67, por seu comportamento variável, não pode ser considerado como marcador de gravidade, assim como o PCNA que não foi um bom marcador de proliferação celular. / Basal Cell Carcinoma (BCC) is the most common form of human cancer, showing a predilection for the head and neck region. Its incidence has been increasing over the last years. Studies employing resources from molecular and genetic medicine associated with histomorphology allow the identification of risk factors in the development of more recurring and aggressive lesions, and propose more efficient prevention methods. The objective was to correlate the expression of markers of apoptosis (p53 and bcl-2) and cell proliferation (Ki-67 and PCNA) with histological indicators of the gravity of the tumor. In this study we analyzed five samples of the nodular, sclerosing and superficial forms, respectively, and one control group with three lesion-free patients. The Mann-Whitney test was used to compare the expression of these markers with the form of manifestation of BCC. Bcl-2 expression was significant in the BCCs said to be aggressive. The sclerosing variant expressed it the most, followed by the nodular variant. Of the studied growths, 66.7% (10) expressed p-53 strongly. Among the controls, one individual expressed it weakly in the basal layer. Our results show a larger expression of Ki-67 in nodular and superficial BCCs, with no expression whatsoever in the controls. PCNA was strongly expressed in all types of tumors and in the controls. Bcl-2 and p-53 have a tendency to indicate the gravity of Basal Cell Carcinoma. In contrast, Ki-67, due to its variable behaviour, can not be considered to be a marker of gravity. Furthermore, OCNA was not a good marker of cell proliferation.