Potato production requires high phosphorus (P) application with potential negative environmental or nutritional consequences for potato as well as for subsequent crops. Impacts of high available P on yield and plant nutrition of species in potato cropping rotations are inadequately understood, and could result in antagonistic interactions with cationic micronutrients such as zinc (Zn) and manganese (Mn). Three hydroponic experiments were conducted with Russet Burbank potato to elucidate P and Zn relationships and associated interactions with other nutrients. In the first experiment, P solution concentration was constant at 256 µM while Zn concentration varied: 0.1, 2, 6, 18, 54, 162 and 456 µM Zn. In the second, Zn solution concentration was constant at 6 µM while P concentration varied: 32, 64, 128, 256, 512, 1024 and 2048 µM P. In the third, three levels of P and Zn varied in all possible combinations: 32, 128 and 1024 µM P and 0.1, 54 and 486 µM Zn. As expected, Zn increased in all plant parts with increasing old shoots while root P increased. This suggests a P-Zn complex formation in roots preventing movement of P to the shoots of plants under high Zn. This was confirmed under variable P and Zn. Contrary to expectations, a direct impact of increased solution P on Zn uptake or distribution in potato was not observed except at 486 µM Zn in the third experiment. Increased solution P at low Zn levels resulted in a steep increase of P in new and old shoot growth and an accumulation of Mn in potato roots—factors that might indirectly impact Zn nutrition in potato. Although high P levels in potato did not directly reduce Zn content or cause Zn deficiency, excessive P accumulation with insufficient Zn may reduce the activity of Zn by interacting with other micronutrients such as Mn.

No description available.

Non-edible plant biomass (lignocellulose) is a valuable precursor for liquid biofuels, through the processes of pretreatment and saccharification followed by fermentation into products such as ethanol or butanol. However, it is difficult to gain access to the fermentable sugars in lignocellulose, and this problem is principally associated with limited enzyme accessibility. Hence, biomass pretreatments that destroy native cell wall structure and allows enzyme access are required for effective biomass conversion techniques. This research studied two novel pretreatment methods on two wood species: 1) a deep eutectic solvent (DES) that, under heat, swells lignocellulose and partially solubilizes cell wall materials by causing breakage of lignin-carbohydrate linkages and depolymerization of the biomass components, and 2) a chelator-mediated Fenton reaction (CMF) that chemically modifies the nanostructure of the cell wall through a non-enzymatic cell wall deconstruction. After pretreatment, utilizing analytical techniques such as nuclear magnetic spectroscopy, wide angle x-ray scattering, and gel permeation chromatography, samples were analyzed for chemical and structural changes in the solubilized and residual materials. After single stage DES (choline-chloride-glycerol) and two stage, CMF followed by DES pretreatments, lignin/carbohydrate fractions were recovered, leaving a cellulose-rich fraction with reduced lignin and hemicellulose content as determined by compositional analysis. Lignin and heteropolysaccharide removal by DES was quantified and the aromatic-rich solubilized biopolymer fragments were analyzed as water insoluble high molecular weight fractions and water-ethanol soluble low molecular weight compounds. After pretreatment for the hardwood sample, enzyme digestibility reached a saccharification yield of 78% (a 13-fold increase) for the two stage (DES/CMF) pretreated biomass even with the presence of some lignin and xylan remained on the pretreated fiber; only a 9-fold increase was observed after the other sequence of CMF followed by DES treatment. Single stage CMF treatment or single stage DES pretreatment improved 5-fold glucose yield compared to the untreated sample for the hardwood sample. The enhancement of enzymatic saccharification for softwood was less than that of hardwoods with only 4-fold increase for the sequence CMF followed by DES treatment. The other sequence of treatments reached up to 2.5-fold improvement. A similar result was determined for the single stage CMF treatment while the single stage DES treatment reached only 1.4-fold increase compared to the untreated softwood. Hence, all these pretreatments presented different degrees of biopolymer removal from the cell wall and subsequent digestibility levels; synergistic effects were observed for hardwood particularly in the sequence DES followed by CMF treatment while softwoods remained relatively recalcitrant. Overall, these studies revealed insight into two novel methods to enhance lignocellulosic digestibility of biomass adding to the methodology to deconstruct cell walls for fermentable sugars. / Ph. D. / Wood is a valuable material that can be used to produce liquid biofuels. Wood main components are biopolymers cellulose, hemicellulose and lignin that form a complex structure. Nature has locked up cellulose in a protective assembly that needs to be destroyed to gain access to cellulose, convert it to glucose and then ferment it to bioalcohol. This process is principally associated with limited enzyme accessibility. Therefore, biomass pretreatments that deconstruct native cell wall structure and allow enzyme access are required for effective biomass conversion techniques. This research studied two novel pretreatment methods on two wood species: 1) a deep eutectic solvent called glyceline that, under heat, swells wood and partially solubilizes cell wall materials by causing breakage of bonds and converting it into smaller molecules (monomers and oligomers), and 2) a chelator-mediated Fenton system (CMF) that chemically modifies the structure of the cell wall. Pretreatments were tested individually and in sequence in sweetgum and southern yellow pine. After pretreatments, utilizing analytical techniques, fractions were investigated for chemical and structural changes in the solubilized and residual materials. Treated wood samples were exposed to enzymatic conversion. A maximum 78% of glucose yield was obtained for the glyceline followed by CMF pretreated wood. For yellow pine only a 24% of glucose yield was obtained for the CMF followed by glyceline treatment. All these pretreatments presented different degrees of biopolymer removal from the cell wall and subsequent enzyme conversion levels. Overall, these studies revealed insight into two novel methods to enhance wood conversion adding to the methodology to deconstruct cell walls for fermentable sugars.

Title: Design and synthesis of selective copper(II) chelators Author: Jan Havlík Department: Department of Inorganic Chemistry, Faculty of Science Supervisor: assoc. prof. RNDr. Jan Kotek, Ph.D. Supervisor's e-mail address: modrej@natur.cuni.cz The aim of this work was to prepare selective copper(II) chelators. Within the frame of this thesis were synthesized 13 compounds, from which 7 are new. All compounds were fully characterized by NMR spectroscopy and mass spectrometry. Copper(II) complex of synthesized ligand 1,11-bis(methylphosphinic acid)cyclam, (1,11-dipin), was studied in thermodynamic and formation/decomplexation studies. For 1,11-dipin-copper(II) complex were determined values of rate constants and activation parameters. Keywords: selective chelator, copper, cyclam derivatives, macrocyclic ligands, methylphosphonate, methylphosphinate

Résumé : Grâce à des caractéristiques physiques particulières, le [indice supérieur 64]Cu (T[indice inférieur 1/2]= 12.7 h; β[indice supérieur+], 0.65 MeV [17.8 %]; β[indice supérieur −], 0.58 MeV [38.4 %]) est un candidat idéal pour l’imagerie TEP et la radiothérapie ciblée du cancer. Son utilisation est actuellement limitée par la disponibilité de chélateurs bi-fonctionnels (CBFs) offrant une résistance élevée aux réactions de transmétallation in vivo. Récemment nous avons développés deux nouveaux CBFs cycliques, DOTHA[indice inférieur 2] et NOTHA[indice inférieur 2], portant des ligands hydroxamates pour la complexation au [indice supérieur 64]Cu. Ces CBFs possèdent une cinétique de marquage rapide dans des conditions très douces, une stabilité élevée in vivo et un profil de biodistribution favorable avec une clairance rapide. Nous proposons maintenant d’étendre notre approche à la préparation de CBFs acycliques plus flexibles et compacts afin de moduler les propriétés biologiques et la pharmacocinétique des traceurs peptidiques. Le but de mon projet de maîtrise est de développer une série de chélateurs acycliques dérivés de l'histidine et de l'acide glutamique et fonctionalisés avec des groupements hydroxamates pour identifier un CBF offrant un complexe stable in vivo avec le [indice supérieur 64]Cu(II). Les CBFs ont été préparés en solution pour faciliter l’optimisation de chaque étape réactionnelle. Les groupements chélatants hydroxamates ont été sélectionnés pour leur habilité à former des complexes stables avec différents métaux et ils ont été liés en position N-terminale et sur la chaîne latérale des acides aminés grâce à des réactions de substitution nucléophile. Les groupements para-methoxy-benzyles ont été judicieusement sélectionnés pour la protection des groupements hydroxamates afin de faciliter, au besoin, une déprotection sélective sous des conditions très douces. L’optimisation du marquage a été effectuée avec l’isotope stable du cuivre et ensuite avec le [indice supérieur 64]Cu en faisant varier le contre ion métallique, le pH, la concentration, et la température. Le CBF offrant la plus grande stabilité, soit celui dérivé de l’histidine, a été conjugué à un peptide, le H[indice inférieur 2]N-PEG-[D-Tyr[indice supérieur 6],βAla[indice supérieur 11],Thi[indice supérieur 13],Nle[indice supérieur 14]]bombesin(6-14) (BBN), se liant fortement aux récepteurs de la relâche de la gastrine surexprimés dans les cancers du sein et de la prostate. La stabilité et l’activité spécifique du CBF-histidine et du radiotraceur marqués au [indice supérieur 64]Cu s’est avérée faible in vitro. Il est connu que l’activité antibactérienne de ligands hydroxamates est associée à leur capacité à complexer le fer. En perspective, comme nos chélateurs complexent très fortement le Fe(III), une alternative pour ces composés serait d’évaluer leur capacité à inhiber la croissance et la prolifération des bactéries. || Abstract : Thanks to its particular physical characteristics, [superscript 64]Cu (T[subscript ½= 12.7 h; β[superscript +], 0.65MeV [17.8 %]; β[superscript −], 0.58MeV [38.4 %]) is an ideal candidate for PET imaging and targeted cancer radiotherapy. Currently, its use is limited by the availability of bi-functional chelators (BFCs) which give high resistance to in vivo transmetallation reactions. Recently, we developed two new cyclic BFCs, DOTHA[subscript 2] and NOTHA[subscript 2], bearing hydroxamate pendant arms for the complexation with [superscript 64]Cu. Those BFCs have fast labeling kinetics under very mild conditions, a high in vivo stability and a biodistribution profile which is favorable with a fast clearance. Now, we propose to expand our approach to the preparation of acyclic BFCs, which are more flexible and compact, in order to better modulate biological properties and the pharmacokinetics of the peptidic tracers. The goal of my Master’s degree project is to develop a series of acyclic chelators derived from histidine and glutamic acid and functionalized with hydroxamate pendant arms to identify a BFC that shows highly stable in vivo complexes with [superscript 64]Cu(II). BFCs have been prepared in solution to facilitate the optimization of each reactive step. Hydroxamate chelating groups have been selected for their ability to form stable complexes with different metals and they have been conjugated in N-terminal position and on the lateral chain of amino acids via nucleophilic substitution reactions. Para-methoxy-benzyl groups have been judiciously selected for the protection of the hydroxamate groups to facilitate, if needed, a selective deprotection under mild conditions. The labeling optimization has been performed with a stable copper isotope, and then with [superscript 64]Cu varying the metallic counter-ion, pH, concentration and temperature. The BFC having the highest stability, the one derived from histidine, was conjugated to a peptide, H[subscript 2]N-PEG-[D-Tyr[superscript 6],βAla[superscript 11],Thi[superscript 13],Nle[superscript 14]]bombesin(6-14) (BBN), strongly bounding the gastrin releasing peptide receptor, which is overexpressed in breast and prostate cancers. Both the stability and specific activity of BFC-histidine of the radiotracer labeled with [superscript 64]Cu were low in vitro. It is known that the antibacterial activity of hydroxamate ligands is associated with their ability to complex iron. In perspective, because our hydroxamate ligands strongly complex Fe(III), an alternative for these compounds would be to assess their ability to inhibit the growth and proliferation of bacteria.

Résumé : L’imagerie TEP est une modalité puissante qui permet de suivre d’infimes concentrations de traceurs marqués pour la détection de cancers et d’autres pathologies. Il y a actuellement un intérêt croissant pour le développement de peptides comme outils diagnostiques et de traitement en oncologie. Cet intérêt se justifie entre autres par le fait que les peptides sont tolérants à la présence de chélateurs bifonctionnels ou de groupements prosthétiques pour le marquage avec divers radiométaux (64Cu, T1/2 = 12,7 h, 68Ga, T1/2 = 68 min, etc.) ou le 18F (T1/2 = 109,8 min) sans perte de leur activité biologique. L’objectif des travaux rapportés dans ce document était de développer des outils moléculaires innovateurs et efficaces qui facilitent le marquage de peptides pour l’imagerie TEP. Il s’agit spécifiquement d’un chélateur bifonctionnel et d’une méthode de conjugaison rapide et sélective de groupe prosthétique. Sur un volet, un chélateur bifonctionnel analogue de la lysine avec des ligands méthylhydroxamates a été synthétisé en solution par double bisalkylation. Les résultats préliminaires indiquent une faible chélation avec le Cu(II), mais sont à poursuivre avec les 68Ga et 89Zr. Pour le second volet de radiomarquage au 18F, les procédures synthétiques ont été optimisées en deux étapes, soient le marquage du groupe prothétique et sa conjugaison au peptide. Tout d’abord, des conditions de marquage par une réaction de SNAr en présence de 18F- ont été développées pour donner le groupe prosthétique 18F-thioester nécessaire à la conjugaison. Par la suite, sa conjugaison au peptide par la réaction de ligation chémosélective, ce qui implique trois étapes 1) une transthioestérification favorisée entre les groupements thioester et thiol des segments de peptides; 2) un réarrangement irréversible de l’intermédiaire thioester en N-(oxyalkyl)amide, suivi; 3) du clivage de l’auxiliaire. Par les présents travaux, il a été prouvé que la nouvelle méthodologie en un seul pot réactionnel accélère la réaction et permet le marquage au 18F de peptides non protégés, limitant ainsi les réactions secondaires et le nombre d’étapes après le marquage des peptides. La conjugaison du groupe prothétique à un composé et un peptide modèle se produit en 26-55 min comparativement aux 48 h des conditions originales rapportées. La méthode proposée permet également le marquage de peptides non protégés. Dans le futur, le chélateur bifonctionnel et le groupe prothétique seront conjugués à différents dérivés peptidiques ciblant des récepteurs impliqués dans le cancer et des tests de compétition, de saturation, de biodistribution et d’imagerie µTEP seront effectués. / Abstract : PET is a powerful imaging modality that follows tiny labeled tracer concentrations for the detection of cancer and other pathologies. There currently is a growing interest for the development of peptides as diagnostic and treatment tools in oncology. This interest is justified by the fact that peptides are tolerant to the presence of bifunctionnal chelators or prosthetic groups for labeling with many radiometals (64Cu, T1/2 = 12,7 h, 68Ga, T1/2 = 68 min, etc.) or 18F (T1/2 = 109,8 min), without losing their biological activity. The objective of the work reported in this document was to develop innovative and efficient molecular tools that facilitate peptide labeling for PET imaging. Specifically, they are a bifunctionnal chelator and a fast and selective prosthetic group conjugation method. On the first aspect, a lysine analogue bifunctionnal chelator bearing methylhydroxamate ligands was synthesized in solution through a double bisalkylation. The preliminary results show a weak Cu(II) chelation, but they are to be pushed forward with 68Ga and 89Zr. On the second aspect of 18F radiolabeling, synthetic procedures were optimised for two steps, which are the prosthetic group’s labeling and its conjugation to the peptide. First, the labeling conditions for a SNAr reaction with 18F- were developed, to yield the necessary 18F-thioester prosthetic group. Then, its conjugation to the peptide by the chemical ligation reaction through its three steps 1) a favored transthioesterification between the thioester and thiol peptide segments; 2) an irreversible rearrangement of the thioester intermediate to a N-(oxyalkyl)amide, followed; 3) the auxiliary cleavage. By this work, it has been proven that the new one pot methodology accelerates the reaction and allows the 18F labeling of unprotected peptides, which limits secondary reactions and the number of post peptide labeling steps. The prosthetic group conjugation to both model compound and peptide takes place in 26-55 min, compared to the 48 h initially reported. The proposed method also allows the labeling of unprotected peptides. In the future, the bifunctionnal chelator and the prosthetic group will be conjugated to different peptide derivatives that target cancer implied receptors and competition, saturation, biodistribution and µPET imaging assays will be performed.

Le travail rapporté dans ce mémoire de thèse concerne la synthèse et la caractérisation de nouveaux semi-conducteurs organiques basés sur un coeur bithiophène. Ce travail s'inscrit dans le prolongement de précédents travaux réalisés au laboratoire portant sur des dérivés du type distyryl-oligothiophènes. Au cours de ce travail, plusieurs voies de synthèse ont été développées afin de fonctionnaliser un coeur bithiophène, rigide ou non, avec différents groupements fonctionnels, principalement pour trois types d'applications : (i) la réalisation de transistors à base de couche mince organique (OFETs), (ii) l'élaboration de cellules solaires à partir de composés push-pull et (iii) le développement de capteurs. Le premier chapitre est consacré à la fonctionnalisation du benzo-[2,1-b:3,4-b']dithiophène-4,5-dione soit par des groupements mésogéniques soit par des motifs aminostyryles. L'objectif est la possibilité de préparer des OFETs par la voie liquide et de tirer profit des propriétés cristal liquide pour améliorer les performances électriques. Les propriétés cristal liquides ont été décrites, et les transistors réalisés. Malheureusement aucune mobilité de porteur de charge n'a pu être enregistrée. Dans un deuxième temps, des modifications structurales ont été apportées sur certaine des structures synthétisées afin d'améliorer les propriétés recherchées. Toutefois, au moment de la rédaction de ce manuscrit, les OFETs n'étaient pas réalisés. Dans le deuxième chapitre, de nouvelles molécules push-pull de type cruciformes ont été synthétisées dans le but d'évaluer leurs performances en tant que composés organiques actifs dans des dispositifs photovoltaïques. / The work reported herein concerns the synthesis and the characterization of new organic semiconductors built around the bithiophene core. It was relied on an extended work carried out previously in our laboratory on distyryloligothiophene derivatives. The main part of this work was dedicated to develop new functionalized organic semi-conductors with the aim to improve their properties for optoelectronic applications, mainly for: i) the realization of transistors with organic thin layer (OFETs), ii) the elaboration of solar cells from push-pull derivatives and iii) the development of sensors. The first chapter is devoted to the functionalization of the benzo-[2,1-b:3,4-b ']bithiophene-4,5-dione core either by mesogenic or aminostyryl groups with the purpose to improve, using liquid crystal properties, the microscopic ordering and the electrical performances of the synthetized organic semiconductors as well as their solution processability. Besides the liquid crystal properties characterization showing interesting behavior, the OFET devices have been made from those semiconductors but unfortunately have led to, as unexpected, poor charge transport properties. Some structural modifications have been done in order to optimize the charge transport characteristics nevertheless their electrical characterization still under progress up to now. In a second part, some push-pull derivatives, having a cruciform-like structure, have been synthetized and characterized in order to use them as an active organic layer in photovoltaic devices. Their optoelectronic properties have been evaluated and reported.

Diabetes mellitus currently affects over 422 million people globally and over 80% of patients with diabetes will develop diabetic retinopathy. Patients with diabetic retinopathy initially develop background retinopathy, which does not cause significant deterioration of visual function; however, background retinopathy may progress and lead to proliferative diabetic retinopathy and diabetic macular oedema, both of which cause severe visual dysfunction if left untreated. Current therapies for diabetic retinopathy include invasive intravitreal injections and laser photocoagulation; however these treatments only attenuate the progression of proliferative diabetic retinopathy and diabetic macular oedema. Aside from prevention by maintaining good blood glucose and blood pressure control, there are currently no treatments to prevent progression to late-stage diabetic retinopathy and new innovations in the field have not significantly progressed. For this reason, we have used untargeted –omics approaches to identify previously unknown pathological pathways in diabetes. In this thesis, I have analysed a range of trace metals in donor retinas and found that total copper was increased in diabetic retinas compared with non-diabetic. This result was replicated in streptozotocin-induced diabetic rat retinas and further evidenced by upregulation of metallothioneins and caeruloplasmin in diabetic rat retinas compared with non-diabetic. Treatment with the copper chelator triethylenetetramine modulated these changes, the downstream effects of which require further study. This is the first description, to our knowledge, of dysregulated copper homeostasis in the diabetic retina. I have also mapped metabolic changes in streptozotocin-induced diabetic rat retinas and found previously undescribed metabolite changes such as diabetes-induced downregulation of scyllo inositol. This coincided with substantial changes to retinal lipids during diabetes and changes to individual lipids were consistent within their respective class. I have also found a pattern whereby regardless of the extent of change to a lipid class in diabetes, lipids containing docosahexaenoic acid (22:6 carbon chain) were consistently downregulated. This is thought to be the first study to describe this range of metabolite changes in the diabetic retina but also the first study to describe this range of metabolite analysis concomitantly within the same tissue sample. The data from this study provides new insights into metallomic and metabolic dysfunction in diabetic retinopathy and shown that these data are reproducible. We suggest that there is plenty of scope for further research to investigate mechanisms behind copper dysregulation, how this affects pathogenesis of diabetic retinopathy along with new insights into dysregulated metabolic pathways.

Eutypa dieback, one of several grapevine trunk diseases (GTDs), is of serious concern to the grape industry globally. This disease is caused by the fungus Eutypa lata but it is often seen in consortia growth with Phaeoacremonium minimum and Phaeomoniella chlamydospora. It is vital to understand the mechanisms for how this disease functions to develop control measures to combat it. Brown rot fungi are able to use a complex of low molecular weight (LMW) metabolites to induce a Fenton reaction to deconstruct woody tissue. These metabolites are part of a chelator mediated Fenton (CMF) chemistry that produces reactive oxygen species that are capable of depolymerizing wood polymers. We propose that a mechanism similar to CMF chemistry may be occurring in grapevine trunk disease pathogens. This thesis investigates how LMW metabolites produced by the fungi contribute to the disease and decay progression in GTDs. Research on Mite control in the laboratory with abamectin was also investigated, as research in this area was required when mites infested our fungal cultures and suitable laboratory controls were not available. Research on the GTD fungi was initiated by first examining whether metabolites produced by the three fungi can function in a manner to promote reactions like the CMF system. We separated and identified specific metabolites that potentially could contribute to CMF chemistry. We found that all three GTD fungi were able to produced LMW metabolites that promoted CMF chemistry, and we hypothesized that this mechanism contributes to processes leading to tissue necrosis in grapevine trunk wood. To explore the development of effective control measures based on this newly discovered mechanism for pathogenesis, we also explored the use of antioxidant/chelator compounds, BHA and BHT, in the control of the consortia fungi. Biocontrol organisms, Bacillus subtilis and Trichoderma atroviride, that produce antioxidants were also tested as biocontrols against the fungi involved in Eutypa Dieback disease. We found that BHA was highly effective in inhibiting fungal growth for all three fungi at concentrations higher than 0.5mM, and both B. subtilis and T. atroviride proved to be effective biocontrol agents in inhibiting E. lata, P. minimum, and P. chlamydospora.