Three separate studies of the effect of plant pathogen on population biology of its host are presented in the thesis. Two are using field data about a widespread system of plant Falcaria vulgaris and its systemic rust fungus Puccinia sii-falcariae. The first study shows, that the disease prevalences in 40 populations of the plant were correlated with the moisture, the soil reaction and the cover of the herb layer at the localities. This was probably a result of the interaction of the life history of the plant and different effect the disease has at various localities. Similar pattern was found in the second study that aimed to determine long-term effect of the disease at the population level at four chosen localities over 4-5 years. Population growth rates were only rarely predicted to be higher for the healthy part of the population when compared with the whole population. Other analyses have however found big differences among years and localities. The locality type (slope vs. field populations) was important factor influencing population stage composition and importance of life cycle transitions for the growth of the population. Finally, the last study explores the possibility that systemic infection in clonal plants might be able to select against clonality. The result of the modelling showed that more...

5 Absctract Environment and demographic characteristics of host population are important factors affecting incidence and severity of plant diseases. The aim of this study was to reveal possible effects of microclimatic and edaphic characteristics and host population demographic factors on the biotrophic pathogen Puccinia cribrata, microcyclic rust parasitising clonal evergreen plant Vinca minor. I studied the ecology of this pathosystem in natural populations of V. minor in the Soča valley in the Julian Alps in Slovenia. Rugged terrain of the Soča valley with different bedrocks allowed to study pathogen distribution at topographically diverse forest and scrub sites, greatly differing in soil depth and canopy structure. P. cribrata was significantly more likely to occur in the themophilous forest with shallow calcareous soils and open canopy than in the mesophilous forest types. Its prevalence (proportion of diseased stems in population) was also highest in this type of vegetation. Most important host population factors were population size and population density positively affecting incidence and prevalence respectively. Additionally, I tested various vegetation and topographic indexes derived from remote sensing for usability in prediction models. It appears that vegetation indexes connected with canopy...

Le concept de niche a été défini par Hutchinson comme un espace multidimensionnel de variables environnementales où l'espèce survie. Au cours de ce travail, je me suis intéressée à différentes limites conceptuelles et opérationnelles du concept de niche. En m'appuyant sur le cas de l'adaptation à la salinité chez le genre Artemia – branchiopode extrêmophile – nous nous sommes intéressés : (i) aux mécanismes à l'origine du maintien du polymorphisme génétique d'une large population clonale, qui m'a permis de m'interroger sur l'échelle utile à l'application du concept de niche ; (ii) à l'impact de la flore bactérienne sur l'adaptation de l'artémie aux faibles salinités, qui m'a permis d'évaluer plus globalement l'impact que les interactions biotiques peuvent avoir dans le contexte multidimensionnel de la niche ; (iii) aux effets de la plasticité et de la qualité d'habitat sur l'adaptation de l'artémie aux fortes salinités, qui pose des questions opérationnelles sur l'évaluation de l'influence de ces facteurs sur la niche. Le travail détaillé dans ce manuscrit s'appuie sur des méthodologies variées et a apporté des éléments de réponses aux problématiques posées. Tout d'abord, nous avons pu montrer que la diversité génétique d'une large population clonale était structurée par des déterminants environnementaux tels que la salinité ou la température. Ce travail a aussi montré que dans le cas d'une population asexuée, le concept de niche pouvait s'appliquer à un groupe d'individu génétiquement proche et pouvant (selon le mode de reproduction) appartenir à une lignée commune. Ensuite, nous avons montré que la niche de la flore intestinale de l'artémie facilite la digestion des algues, mais contraint leur tolérance aux faibles salinités. Il faut alors envisager que les interactions biotiques peuvent avoir différents effets (parfois même contradictoires) sur les différents axes de la niche de l'espèce focale. Enfin, nous avons apporté des solutions méthodologiques pour évaluer séparément l'impact de la plasticité et de la qualité d'habitat sur l'adaptation des artémies aux fortes salinités. Au final, nous avons apporté des solutions conceptuelles et/ou opérationnelles permettant de solidifier le concept de niche qui est une notion clé en écologie évolutive. / Hutchinson defined the niche concept as the multidimensional space of environmental variables where the specie survives. During this work, I focused on several conceptual and operational limits of this concept. Basing our work on the adaptation to salinity of the genus Artemia – an extremophile branchipod – we studied: (i) mechanisms involved in the polymorphism maintenance in a large clonal population, which asked the question of the scaling in the use of the niche concept; (ii) impact of the gut microbiota on the adaptation to low salinities, which asked the question on the impact of biotic interactions on the niche; (iii) the effects of habitat quality and phenotypic plasticity on the tolerance to high salinities, which asked operational questions on the evaluation of theses factors and there impact on the niche. The work detailed in this manuscript is based on a large variety of methodologies and helped providing elements of answers to solve the problematic. First, we showed that the important diversity found in the large clonal population was structured by environmental variables such as salinity and temperature. Therefore, in the case of a large asexual population, the niche concept can apply to a group of genetically close individual that might share (depending on the reproduction mode) common ancestry. Then, we showed that the niche of the gut microbiota, associated with Artemia for algae digestion, constrained their host tolerance to low salinities. Thus, biotic interactions may have different effects (even conflicting sometimes) on the different axes of their host niche. Finally, we provided some methodological solutions to evaluate separately the impact of plasticity and habitat quality on the adaptation of Artemia to high salinities. In the end, we provided conceptual and/or operational solutions that strengthen the evolutionary ecology key concept of the niche.

<p>About 70% of the plant species in the temperate zone are characterised by clonal growth, clonal species are also in majority in the Arctic and Subarctic where they affect the structure and composition of the vegetation. It is therefore of great importance to increase our knowledge about clonal plants and their growth and life histories. I have investigated how ramets of the stoloniferous plant <i>Linnaea borealis</i> are affected by the naturally occurring variation in environmental factors, such as: light, nutrient and water availability. Moreover, I examined the seed set and how supplemental hand pollination affects seed set in <i>L. borealis</i>, and also investigated the significance of the apical meristem for shoot population fitness. All studies were performed under field conditions in northern Sweden in a Subarctic environment and most are experimental.</p><p>The results show that nutrient resorption from senescing leaves is not significantly affecting the growth and nutrient pools of the ramet. This implies that the growth of<i> L. borealis </i>ramets is not governed by micro-site resource availability. However, removal of light competition resulted in increased branching and number of lateral meristems produced, reduced growth, and decreased root:shoot ratio on a per ramet basis. Thus, ramets of <i>L. borealis </i>can efficiently exploit favourable light patches through plastic growth. Apical dominance exerts a significant effect on shoot population fitness and can be lost through rodent grazing. However, loss of apical dominance is dependent on the timing of grazing, if the apical meristem is removed early in the autumn the ramet can repair the loss until the next summer. If grazing occur during spring the dry weight and leaf area production is affected negatively. Seed production in <i>L. borealis</i> in the Abisko area varies between years and sites, and was unaffected by supplemental hand pollination treatment, implying that there is no lack of pollinator activity.</p>

About 70% of the plant species in the temperate zone are characterised by clonal growth, clonal species are also in majority in the Arctic and Subarctic where they affect the structure and composition of the vegetation. It is therefore of great importance to increase our knowledge about clonal plants and their growth and life histories. I have investigated how ramets of the stoloniferous plant Linnaea borealis are affected by the naturally occurring variation in environmental factors, such as: light, nutrient and water availability. Moreover, I examined the seed set and how supplemental hand pollination affects seed set in L. borealis, and also investigated the significance of the apical meristem for shoot population fitness. All studies were performed under field conditions in northern Sweden in a Subarctic environment and most are experimental. The results show that nutrient resorption from senescing leaves is not significantly affecting the growth and nutrient pools of the ramet. This implies that the growth of L. borealis ramets is not governed by micro-site resource availability. However, removal of light competition resulted in increased branching and number of lateral meristems produced, reduced growth, and decreased root:shoot ratio on a per ramet basis. Thus, ramets of L. borealis can efficiently exploit favourable light patches through plastic growth. Apical dominance exerts a significant effect on shoot population fitness and can be lost through rodent grazing. However, loss of apical dominance is dependent on the timing of grazing, if the apical meristem is removed early in the autumn the ramet can repair the loss until the next summer. If grazing occur during spring the dry weight and leaf area production is affected negatively. Seed production in L. borealis in the Abisko area varies between years and sites, and was unaffected by supplemental hand pollination treatment, implying that there is no lack of pollinator activity.

The Florida Keys National Marine Sanctuary (FKNMS) encompasses North America's only living coral barrier reef and the third longest barrier reef in the world, making it a unique national treasure of international notoriety (FKNMS, 2005). Recent evidence of environmental decline within the sanctuary has created a sense of urgency to understand and protect the valuable resources within. This thesis contributed to the understanding of habitat connectivity to aid managers and decision makers in the creation of additional Marine Protected Areas (MPAs) in the FKNMS to help prevent further environmental decline. This research specifically focused on modeling larval transport and larval connectivity among Acropora palmata (Lamarck, 1816) populations, coral habitats and MPAs in the upper and middle FKNMS. The transport of larvae in relation to ocean currents is a very limited area of research, and the analytic modeling results may serve as powerful guides to decisions about the relative importance of individual coral habitats and MPAs in the study area.Larval transport was modeled with ArcGIS and TauDEM using SoFLA-HYCOM simulated ocean currents during the A. palmata spawning season. This model allowed for the assessment of coral habitat and A. palmata population larval connectivity. The dependence of three distant A. palmata test populations on other upstream coral habitats and A. palmata populations significantly differed (Kruskal-Wallis test, P less than 0.0001). The clonally diverse Sand Island Reef A. palmata population's larval connectivity was significantly higher compared to other distant monoclonal populations (Mann-Whitney test, P less than 0.0001). Compared to the clonal structure of each test population determined by Baums, Miller, and Hellberg (2006), results indicated simulated larval connectivity may be a determinant of A. palmata population clonal diversity.By modeling MPA and coral habitat connectivity, this study also identified unprotected and distant coral habitat areas with the greatest downstream influence on MPAs; these may serve as potential coral larvae sources. It is recommended that establishing these areas as no-take MPAs would improve overall coral habitat and MPA network connectivity.

The scope of this thesis was to identify, describe and quantify important life-history traits for the pseudoannual aquatic plant Ranunculus lingua in different ecological settings, by comparing populations from geographically marginal vs. central habitats. Results from a four-year field study showed that abiotic factors (water-level fluctuations and associated processes) tended to have a greater influence in marginal populations, whereas biotic factors (competition, insect grazing and fungal infections) dominated in central populations. This was reflected in different depth distribution of ramet numbers and ramet sizes between the areas, and In different dynamic patterns, with a higher flux of ramets in marginal populations. In a reciprocal transplant experiment, marginal ramets produced more but smaller rhizomes, whereas central ramets produced Individually larger but fewer rhizomes, irrespective of transplant site. A possible selection for genotypes producing large rhizomes in the central habitat was supported by the fact that initially smaller ramets were more likely to be diseased by the fungal pathogen Peronospora gigantea and damaged by insect grazing. In the marginal population, where density-independent mortality factors tend to dominate, a high reproductive output, expressed in production of high numbers of rhizomes, was suggested to be a favoured life-history trait. In a glasshouse experiment, ramets from marginal and central populations were grown in low and high densities and under three contrasting nutrient levels. The allocation to sexual structures was generally very low, and did not incur any costs in terms of reduced rhizome production. Rhizome production showed strong positive allometrical relationships to mother ramet size. Increasing mother ramet size resulted in a larger increase in rhizome numbers for the marginal than for the central population, whereas the increase in mean rhizome mass was more pronounced for the centred population. Both populations showed similar reductions in rhizome production in response to increased density and lowered nutrient levels, which could not be explained by size-dependent effects adone. The dispersal, dynamics and distribution of R. lingua were studied in a marginal river population in northern Sweden, where the only means of dispersal is by vegetative diaspores, i.e. floating rhizome fragments. Stranding occurred mainly in river curves and at obstacles, and the distribution of established stands was also highly correlated with these features. Relative changes in ramet numbers were correlated with water-level fluctuations during the present and previous growing seasons, with winter low-water, and with duration of spring-flood. The predictability of change was high within but low between stands. It was concluded that the patterns and mechanisms of dispersal are fundamental for local distribution patterns as well as variation in regional abundance in R. lingua / <p>Diss. (sammanfattning) Umeå : Umeå universitet, 1992, härtill 4 uppsatser</p> / digitalisering@umu

The co-occurrence of polyploidy and clonal reproduction among plant species has long been recognized, but the evolutionary mechanisms underlying the association are unknown. Here, I investigate whether polyploidy increases the magnitude of clonality, either directly or indirectly, by comparing the extent and spatial structure of clones between diploid and tetraploid Chamerion angustifolium in a greenhouse environment and natural populations. In the greenhouse, tetraploid plants allocated 90.4% more dry mass to root buds, the primary mechanism of clonal reproduction, than diploids. Per unit root mass, tetraploids produced 44% fewer root buds and the average position of the root buds along the root was 47% closer to the stem than in diploids. In natural populations, the magnitude of clonality in tetraploid C. angustifolium was similar or less than in diploids. However, clones were spatially aggregated in all diploid populations but only in two of five tetraploid populations. Average clone patch diameter, however, was not significantly different between diploids (3.9 m) and tetraploids (2.5 m). These data do not support the hypothesis that clonality increases as a result of genome duplication. Rather, it is possible that clonality is linked to genome duplication because clonal diploids are predisposed for polyploid formation and establishment. / National Science and Engineering Research Council, Canada Research Chair Program, Canadian Foundation for Innovation

Access to primary human corneal endothelial cells (HCEC) is limited and donor-derived differences between cultures exacerbate the issue of data reproducibility, whereas cell lines can provide sufficient numbers of homogenous cells for multiple experiments. An immortalized HCEC population was adapted to serum-free culture medium and repeated cloning was performed. Clonally grown cells were propagated under serum-free conditions and growth curves were recorded. Cells were characterized immunocytochemically for junctional proteins, collagens, Na,K-ATPase and HCEC-specific 9.3.E-antigen. Ultrastructure was monitored by scanning and transmission electron microscopy. Two clonal cell lines, HCEC-B4G12 and HCEC-H9C1, could be isolated and expanded, which differed morphologically: B4G12 cells were polygonal, strongly adherent and formed a strict monolayer, H9C1 cells were less adherent and formed floating spheres. The generation time of B4G12 cells was 62.26 ± 14.5 h and that of H9C1 cells 44.05 ± 5.05 h. Scanning electron microscopy revealed that B4G12 cells had a smooth cell surface, while H9C1 cells had numerous thin filopodia. Both cell lines expressed ZO-1 and occludin adequately, and little but well detectable amounts of connexin-43. Expression of HCEC-specific 9.3.E-antigen was found commensurately in both cell lines, while expression of Na,K-ATPase α1 was higher in H9C1 cells than in B4G12 cells. B4G12 cells expressed collagen IV abundantly and almost no collagen III, while H9C1 cells expressed both collagens at reasonable amounts. It is concluded that the clonal cell line B4G12 represents an ideal model of differentiated HCEC, while H9C1 may reflect features of developing or transitional HCEC. / Dieser Beitrag ist mit Zustimmung des Rechteinhabers aufgrund einer (DFG-geförderten) Allianz- bzw. Nationallizenz frei zugänglich.

Clonally variant gene expression (CVGE) is a common survival strategy used by many pathogens, including the malaria parasite Plasmodium falciparum. Among the genes that show CVGE are several members of the clag and eba families. The active or repressed state of clag3.1, clag3.2 and eba‐140 is transmitted epigenetically and is controlled by the euchromatic or heterochromatic state of bistable chromatin domains, characterised by H3K9ac and H3K9me respectively. Both of these modifications are maintained throughout the asexual cycle to transmit epigenetic memory. We have characterised CVGE on a genome‐wide level and found that it is widespread. Using clag3.2 in proof‐of‐principle experiments, we demonstrate that CVGE for genes other than var can be reproduced in an episomal system and provide preliminary evidence that CVGE is regulated by the spontaneous formation of facultative heterochromatin. The mutually exclusive expression of clag3.1 and clag3.2 is also addressed, including the characterisation of a neighbouring noncoding RNA. / La variació clonal en l'expressió gènica (CVGE) és una estratègia de supervivència comú utilitzada per molts patògens, incloent el paràsit de la malària Plasmodium falciparum. Entre els gens que mostren CVGE hi ha diversos membres de les famílies clag i eba. L'estat actiu o inactiu de clag3.1, clag3.2 i eba‐140 es transmet epigenèticament i és controlat per l'estat eucromatínic o heterocromatínic de dominis de cromatina biestables, caracteritzats respectivament per H3K9ac i H3K9me. Ambdues modificacions es mantenen durant tot el cicle asexual per transmetre la informació epigenètica. També hem caracteritzat la CVGE a nivell de tot el genoma, i hem vist que afecta un gran nombre de gens. Experiments preliminars amb clag3.2 ens demostren que la CVGE de gens diferents que var es pot reproduir en un sistema episomal I proporcionen evidència preliminar de què la CVGE està regulada per la formació espontània d’heterocromatina facultativa. També s’ha estudiat l'expressió mútuament exclusiva de clag3.1 i clag3.2, incloent la caracterització d’un ARN no‐codificant veí.