Disturbance events affect forest composition and structure across a range of spatial and temporal scales, and forest development may differ after natural, anthropogenic, or compound disturbances. Following large, natural disturbances, salvage logging is a common yet controversial management practice around the globe. While the short-term impacts of salvage logging have been studied in many systems, the long-term effects remain unclear. Further, while natural disturbances create many persistent and unique microsite conditions, little is known about the long-term influence of microsites on forest development. We capitalized on over eighty years of data on stand development following the 1938 hurricane in New England to provide the longest known evaluation of salvage logging impacts, as well as to highlight developmental trajectories for eastern hemlock (Tsuga canadensis)-white pine (Pinus strobus) forests under a variety of disturbance histories. Eight decades following disturbance, there were no differences in current overstory composition between areas that were logged, hurricane disturbed, or hurricane disturbed and salvage logged, but white pine declined across most sites. In contrast, structural characteristics remain distinct between the three management histories. In the unsalvaged area, the diversity of microsites and the coverage of uprootings and pits influenced overstory tree composition, diversity, and structural characteristics. These findings underscore the long-term influence of salvage logging on forest development and the importance of natural disturbance-mediated microsite conditions on tree species growth and survival. Future salvage logging efforts should consider these impacts and provide a greater range of unsalvaged areas across the landscape to maintain these important structural legacies over the long term.

I evaluated effects of 4 common site preparation techniques on residual structure while comparing 2 techniques commonly used to estimate CWD volume in Southeast loblolly pine (Pinus taeda) commercial pine plantations in 2 ecoprovinces. The strip plot method (SPM) estimated greater volume than the line intercept method (LIM; 9.7 m3/ha and 11.4 m3/ha respectively). The SPM had lesser volume estimate variability and appears more appropriate for the Southeast. Mechanical sites had the greatest densities of green trees and fewest snag retention and overall were least decayed. Chemical preparation combinations had lesser green tree densities but greater snag densities. Piled CWD volumes were greatest in mechanical treatments and least in chemical plus burn treatments. The Outer Coastal Plain Mixed Forest Ecoprovince had 20% less volume than the Southeastern Mixed Forest Ecoprovince. Chemical plus burn site preparations had the least densities of remnant trees, snags, piled and individual CWD pieces.

The objective of this study was to test the line intersect sampling (LIS) methodology using the design-based inference with stratified systematic sampling and two transect shapes: a straight line and a cross shape, both with three different lengths (100, 150, and 200 m) to estimate the number of coarse woody debris (CWD) elements, their volume, biomass and carbon stocks; by decay class; furthermore, we fit and select CWD biomass and carbon models. The study area includes two types of native forest in the State of São Paulo, Brazil: a Seasonal Semi-deciduous Forest (SSF) and a Cerrado sensu-stricto (CSS). Two strata were chosen in each area, and in each stratum ten sampling units were installed according to a systematic sampling protocol. Each sampling unit had one North- South line of 200 m superimposed over the other lengths (100 and 150 m) and three lines (one for each length) in the East-West direction forming the cross shapes, for a total 650 m per sampling unit. All CWD elements with a diameter _ 10 cm that crossed the transect were tallied. For each element, the diameter, length, perpendicular width, decay class, and (when possible) species was recorded. Disc samples were taken from each element, from which cylinder samples were extracted then oven dried to determine density. These cylinders were milled and analyzed to determine carbon content (%). The volume of each element was calculated by taking the difference between cross-sectional area and any hollowed area, then multiplying by the element\'s length. Biomass was calculated by multiplying volume values by density values, and carbon stocks were calculated by multiplying biomass by the carbon percentage factors computed via lab analysis. Total estimators were calculated by area and per hectare for the number of CWD elements, their volume, biomass, and carbon stocks. These estimators were calculated by stratum then combined across the entire sample population. The data from each sampling unit was also used to calculate the wood density and carbon concentration by decay class, as well as to fit linear and nonlinear models. For the SSF area, the most accurate transect design was the 200 m cross shaped; and for the CSS area was selected the 150 m cross shape. Both areas showed lower biomass values (1.3 and 6.7 Mg/ha for the CSS and SSF areas, respectively) than other studies in the Amazon Forest where CWD research has been conducted. In both areas, as the decay class increased (from least to most rotten material), wood density decreased, which follows the same pattern as other literature. Carbon concentration barely changed within decay classes. Using a conversion constant of 50%, similar carbon stock results were obtained. Nonlinear models (using diameter and length as predictor variables) proved an efficient tool for predicting CWD biomass at an element level. As expected, biomass data exhibited heteroscedasticity, which was mitigated by modeling the variance of the residuals with a power function of the combined variable. Adding decay class as an indicator variable also resulted in model improvement. / Este estudo buscou testar a metodologia de amostragem pela linha interceptadora (LIS), usando a inferência baseada no design, com amostragem sistemática estratificada em duas formas de transectos: linha reta e forma de cruz, ambos com três diferentes comprimentos de transectos: 100, 150 e 200 m para estimar o número de elementos, volume, biomassa e estoque de carbono de madeira morta; investigar a densidade da madeira e a concentração de carbono da madeira morta pela classe de decomposição; e, ajustar e selecionar modelos de biomassa e carbono de madeira morta, em dois tipos de floresta nativa no estado de São Paulo, Brasil: uma Floresta Estacional Semidecidual (SSF) e um Cerrado sensu-stricto (CSS). Em cada tipo florestal foram selecionados dois estratos e localidas dez unidades de amostragem em cada. A unidade de amostragem é um transecto Norte-Sul, com 200 m, que sobrepõe os outros comprimentos (100 e 150 m), e três transectos (para cada comprimento) na direção Leste-Oeste, formando a cruz, totalizando 650m. Foram medidos todos os elementos de madeira morta grossa (CWD) que cruzaram o transecto com um diâmetro _10 cm. Foi medido o diâmetro na interseção, o comprimento, a largura perpendicular, o elemento foi classificado de acordo com a classe de decomposição e, quando possível, a espécie foi identificada. De cada elemento foi retirado um disco de amostra na interseção, este foi fotografado para o cálculo da área oca. De cada disco foram extraídos cilindros, secos em estufa para determinação da densidade, estes foram moídos e analisados para determinação do teor de carbono (%). O volume de cada elemento foi calculado pela diferença da área seccional e área oca, multiplicada pelo comprimento; a biomassa foi calculada multiplicando o volume pela densidade; e o estoque de carbono foi calculado multiplicando a biomassa pela concentração de carbono. Os estimadores do total foram calculados por área e por hectare para o número de elementos de CWD, volume, biomassa e estoque de carbono; foram calculados por estrato, e combinados para a população. Os dados dos 650m de cada unidade foram utilizados para calcular as médias da densidade da madeira e concentração de carbono por classe de decomposição e, para construção de modelos lineares e não-lineares. Para a SSF, o design mais preciso foi transectos em forma de cruz, com 200 m. Para CSS foram selecionados transectos em cruz, com 150 m. As áreas apresentaram valores de biomassa 1.3-6.7 Mg/ha para CSS e SSF, respectivamente. Em ambos tipos florestais foi encontrado que à medida que a classe de decomposição aumenta (mais fresco para mais podre), a densidade da madeira diminui, seguindo os mesmos padrões encontrados na literatura. A concentração de carbono não apresentou mudança dentro das classes de decomposição. Modelos nãolineares com diâmetro e comprimento como variáveis preditoras provaram ser uma ferramenta eficiente para predizer a biomassa e carbono de CWD. Como esperado, os dados de biomassa apresentaram heterocedasticidade, mitigada pela modelagem da variância dos resíduos com uma função de potência. A adição da classe de decomposição como variável indicadora também mostrou melhora nos modelos.

In this thesis I present and test a methodology for developing a stand scale index of structural complexity. If properly designed such an index can act as a summary variable for a larger set of stand structural attributes, providing a means of ranking stands in terms of their structural complexity, and by association, their biodiversity and vegetation condition. This type of index can also facilitate the use of alternative policy instruments for biodiversity conservation, such as mitigation banking, auctions and offsets, that rely on a common currency – the index value – that can be compared or traded between sites. My intention was to establish a clear and documentable methodology for developing a stand scale index of structural complexity, and to test this methodology using data from real stands.¶ As a starting point, I reviewed the literature concerning forest and woodland structure and found there was no clear definition of stand structural complexity, or definitive suite of structural attributes for characterising it. To address this issue, I defined stand structural complexity as a combined measure of the number of different structural attributes present in a stand, and the relative abundance of each of these attributes. This was analogous to approaches that have quantified diversity in terms of the abundance and richness of elements. It was also concluded from the review, that stand structural complexity should be viewed as a relative, rather than absolute concept, because the potential levels of different structural attributes are bound within certain limits determined by the inherent characteristics of the site in question, and the biota of the particular community will have evolved to reflect this range of variation. This implied that vegetation communities with naturally simple structures should have the potential to achieve high scores on an index of structural complexity.¶ I proposed the following five-stage methodology for developing an index of stand structural complexity: 1. Establish a comprehensive suite of stand structural attributes as a starting point for developing the index, by reviewing studies in which there is an established relationship between elements of biodiversity and structural attributes. 2. Develop a measurement system for quantifying the different attributes included in the comprehensive suite. 3. Use this measurement system to collect data from a representative set of stands across the range of vegetation condition (highly modified to unmodified) and developmental stages (regrowth to oldgrowth) occurring in the vegetation communities in which the index is intended to operate. 4. Identify a core set of structural attributes from an analysis of these data. 5. Combine the core attributes in a simple additive index, in which attributes are scored relative to their observed levels in each vegetation community.¶ Stage one of this methodology was addressed by reviewing a representative sample of the literature concerning fauna habitat relationships in temperate Australian forests and woodlands. This review identified fifty-five studies in south-east and south-west Australia, in which the presence or abundance of different fauna were significantly (p&lt0.05) associated with vegetation structural attributes. The majority of these studies concerned bird, arboreal mammal, and ground mammal habitat requirements, with relatively fewer studies addressing the habitat requirements of reptiles, invertebrates, bats or amphibians. Thirty four key structural attributes were identified from these fifty-five studies, by grouping similar attributes, and then representing each group with a single generic attribute. This set, in combination with structural attributes identified in the earlier review, provided the basis for developing an operational set of stand level attributes for the collection of data from study sites.¶ To address stages two and three of the methodology, data were collected from one woodland community –Yellow Box-Red Gum (E. melliodora-E. Blakelyi ) – and two dry sclerophyll forest communities – Broadleaved Peppermint-Brittle Gum (E. dives-E. mannifera ), Scribbly Gum-Red Stringybark (E. rossii E. macrorhyncha ) – in a 15,000 km2 study area in the South eastern Highlands Bioregion of Australia. A representative set of 48 sites was established within this study area, by identifying 24 strata, on the basis of the three vegetation communities, two catchments, two levels of rainfall and two levels of condition, and then locating two sites (replicates) within each stratum. At each site, three plots were systematically established, to provide an unbiased estimate of stand level means for 75 different structural attributes.¶ I applied a three-stage analysis to identify a core set of attributes from these data. The first stage – a preliminary analysis – indicated that the 48 study sites represented a broad range of condition, and that the two dry sclerophyll communities could be treated as a single community, which was structurally distinct from the woodland community. In the second stage of the analysis, thirteen core attributes were dentified using the criteria that a core attribute should:¶ 1. Be either, evenly or approximately normally distributed amongst study sites; 2. Distinguish between woodland and dry sclerophyll communities; 3. Function as a surrogate for other attributes; 4. Be efficient to measure in the field. The core attributes were: Vegetation cover &lt0.5m Vegetation cover 0.5-6.0m; Perennial species richness; Lifeform richness; Stand basal area of live trees; Quadratic mean diameter of live stems; ln(number of regenerating stems per ha+1); ln(number of hollow bearing trees per ha+1);ln(number of dead trees per ha+1);sqrt(number of live stems per ha &gt40cm dbh); sqrt(total log length per ha); sqrt(total largelog length per ha); Litter dry weight per ha. This analysis also demonstrated that the thirteen core attributes could be modelled as continuous variables, and that these variables were indicative of the scale at which the different attributes operated.¶ In the third and final stage of the analysis, Principal Components Analysis was used to test for redundancy amongst the core attributes. Although this analysis highlighted six groupings, within which attributes were correlated to some degree, these relationships were not considered sufficiently robust to justify reducing the number of core attributes.¶ The thirteen core attributes were combined in a simple additive index, in which, each attribute accounted for 10 points in a total index value of 130. Attributes were rescaled as a score from 0-10, using equations that modelled attribute score as a function of the raw attribute data. This maintained a high correlation (r > 0.97, p< 0.0001) between attribute scores and the original attribute data. Sensitivity analysis indicated that the index was not sensitive to attribute weightings, and on this basis attributes carried equal weight. In this form my index was straightforward to apply, and approximately normally distributed amongst study sites.¶ I demonstrated the practical application of the index in a user-friendly spreadsheet, designed to allow landowners and managers to assess the condition of their vegetation, and to identify management options. This spreadsheet calculated an index score from field data, and then used this score to rank the site relative to a set of reference sites. This added a regional context to the operation of the index, and is a potentially useful tool for identifying sites of high conservation value, or for identifying sites where management actions have maintained vegetation quality. The spreadsheet also incorporated the option of calculating an index score using a subset of attributes, and provided a measure of the uncertainty associated with this score.¶ I compared the proposed index with five prominent indices used to quantify vegetation condition or habitat value in temperate Australian ecosystems. These were: Newsome and Catling’s (1979) Habitat Complexity Score, Watson et al.’s (2001) Habitat Complexity Score, the Site Condition Score component of the Habitat Hectares Index of Parkes et al. (2003), the Vegetation Condition Score component of the Biodiversity Benefits Index of Oliver and Parkes (2003), and the Vegetation Condition Score component of the BioMetric Assessment Tool of Gibbons et al. (2004). I found that my index differentiated between study sites better than each of these indices. However, resource and time constraints precluded the use of a new and independent data set for this testing, so that the superior performance of my index must be interpreted cautiously.¶ As a group, the five indices I tested contained attributes describing compositional diversity, coarse woody debris, regeneration, large trees and hollow trees – these were attributes that I also identified as core ones. However, unlike these indices, I quantified weeds indirectly through their effect on indigenous plant diversity, I included the contribution of non-indigenous species to vegetation cover and did not apply a discount to this contribution, I limited the direct assessment of regeneration to long-lived overstorey species, I used stand basal area as a surrogate for canopy cover, I quantified litter in terms of biomass (dry weight) rather than cover, and I included the additional attributes of quadratic mean diameter and the number of dead trees.¶ I also concluded that Parkes et al. (2003), Oliver and Parkes (2003), and Gibbons et al. (2004), misapplied the concept of benchmarking, by characterising attributes in terms of a benchmark range or average level. This ignored processes that underpin variation at the stand level, such as the increased development of some attributes at particular successional stages, and the fact that attributes can respond differently to disturbance agents. It also produced indices that were not particularly sensitive to the differences in attribute levels occurring between stands. I suggested that a more appropriate application of benchmarking would be at the overarching level of stand structural complexity, using a metric such as the index developed in this thesis. These benchmarks could reflect observed levels of structural complexity in unmodified natural stands at different successional stages, or thresholds for structural complexity at which a wide range of biota are present, and would define useful goals for guiding on-ground management.

The fitness of female Pacific salmon (Oncorhynchus spp.) with respect to breeding behavior can be partitioned into at least four components: survival to reproduction, competition for breeding sites, success of egg incubation, and suitability of the local environment near breeding sites for early rearing of juveniles. Accordingly, breeding sites should exhibit predictable habitat features linked to these components. In this study, I evaluated the relative influences of habitat features linked to fitness components on selection of breeding sites by coho salmon (Oncorhynchus kisutch). I also evaluated associations between breeding site selection and additions of large wood, as the latter were introduced into the study system as a means of restoring habitat conditions to benefit coho salmon. I used a model selection approach to organize specific habitat features into groupings reflecting fitness components and influences of large wood. The relative likelihood of each of these models was then evaluated based on how coho salmon were observed to select breeding sites. Specific variables examined within these models included depth at the redd, width to depth ratio, stream network location, proximity to other redds, maximum depth, proximity to a pool tail, and the count of naturally occurring and artificially placed large wood. Results of this work suggest that female coho salmon most likely select breeding sites based on habitat features linked to all four hypothesized fitness components. Linkages between large wood and breeding site selection were less clear, likely due to mismatches between the scale at which availability was quantified relative to the geomorphic influences of wood, insufficient time for wood to have geomorphic influences on habitat, or the directionality in which geomorphic effects are currently manifested (i.e., upstream, downstream, or bi-directional influences). Future work focused on geomorphic processes in this system could reveal stronger linkages between instream wood and the habitat features that coho salmon select for breeding. / Graduation date: 2013

No description available.

Old-growth stands are important for management, conservation, wildlife, recreation, and maintaining biological diversity in forested landscapes. However, we are lacking the information needed to adequately identify and characterize old-growth stands. This is especially true for high elevation, interior forests. The characterization of stand structure and regeneration pattern will help in the development of site-specific guidelines for identifying old growth stands and restoring some of the old-growth characteristics in managed stands. This pamphlet presents a synopsis of a study investigating stand structure and regeneration of old-growth stands in the Moist Cold Engelmann Spruce - Subalpine Fir (ESSFmc) Subzone near Smithers, B.C. The three stands selected for the study were located on zonal sites, each in different watersheds, and the stands were established after fire. The criteria used for selection were: i) absence of lodgepole pine, ii) presence of advanced regeneration, and iii) abundant snags and coarse woody debris. These stands were presumed to represent the old-growth stage of stand development or the final (climax) stage of secondary succession.

The objective of this study was to test the line intersect sampling (LIS) methodology using the design-based inference with stratified systematic sampling and two transect shapes: a straight line and a cross shape, both with three different lengths (100, 150, and 200 m) to estimate the number of coarse woody debris (CWD) elements, their volume, biomass and carbon stocks; by decay class; furthermore, we fit and select CWD biomass and carbon models. The study area includes two types of native forest in the State of São Paulo, Brazil: a Seasonal Semi-deciduous Forest (SSF) and a Cerrado sensu-stricto (CSS). Two strata were chosen in each area, and in each stratum ten sampling units were installed according to a systematic sampling protocol. Each sampling unit had one North- South line of 200 m superimposed over the other lengths (100 and 150 m) and three lines (one for each length) in the East-West direction forming the cross shapes, for a total 650 m per sampling unit. All CWD elements with a diameter _ 10 cm that crossed the transect were tallied. For each element, the diameter, length, perpendicular width, decay class, and (when possible) species was recorded. Disc samples were taken from each element, from which cylinder samples were extracted then oven dried to determine density. These cylinders were milled and analyzed to determine carbon content (%). The volume of each element was calculated by taking the difference between cross-sectional area and any hollowed area, then multiplying by the element\'s length. Biomass was calculated by multiplying volume values by density values, and carbon stocks were calculated by multiplying biomass by the carbon percentage factors computed via lab analysis. Total estimators were calculated by area and per hectare for the number of CWD elements, their volume, biomass, and carbon stocks. These estimators were calculated by stratum then combined across the entire sample population. The data from each sampling unit was also used to calculate the wood density and carbon concentration by decay class, as well as to fit linear and nonlinear models. For the SSF area, the most accurate transect design was the 200 m cross shaped; and for the CSS area was selected the 150 m cross shape. Both areas showed lower biomass values (1.3 and 6.7 Mg/ha for the CSS and SSF areas, respectively) than other studies in the Amazon Forest where CWD research has been conducted. In both areas, as the decay class increased (from least to most rotten material), wood density decreased, which follows the same pattern as other literature. Carbon concentration barely changed within decay classes. Using a conversion constant of 50%, similar carbon stock results were obtained. Nonlinear models (using diameter and length as predictor variables) proved an efficient tool for predicting CWD biomass at an element level. As expected, biomass data exhibited heteroscedasticity, which was mitigated by modeling the variance of the residuals with a power function of the combined variable. Adding decay class as an indicator variable also resulted in model improvement. / Este estudo buscou testar a metodologia de amostragem pela linha interceptadora (LIS), usando a inferência baseada no design, com amostragem sistemática estratificada em duas formas de transectos: linha reta e forma de cruz, ambos com três diferentes comprimentos de transectos: 100, 150 e 200 m para estimar o número de elementos, volume, biomassa e estoque de carbono de madeira morta; investigar a densidade da madeira e a concentração de carbono da madeira morta pela classe de decomposição; e, ajustar e selecionar modelos de biomassa e carbono de madeira morta, em dois tipos de floresta nativa no estado de São Paulo, Brasil: uma Floresta Estacional Semidecidual (SSF) e um Cerrado sensu-stricto (CSS). Em cada tipo florestal foram selecionados dois estratos e localidas dez unidades de amostragem em cada. A unidade de amostragem é um transecto Norte-Sul, com 200 m, que sobrepõe os outros comprimentos (100 e 150 m), e três transectos (para cada comprimento) na direção Leste-Oeste, formando a cruz, totalizando 650m. Foram medidos todos os elementos de madeira morta grossa (CWD) que cruzaram o transecto com um diâmetro _10 cm. Foi medido o diâmetro na interseção, o comprimento, a largura perpendicular, o elemento foi classificado de acordo com a classe de decomposição e, quando possível, a espécie foi identificada. De cada elemento foi retirado um disco de amostra na interseção, este foi fotografado para o cálculo da área oca. De cada disco foram extraídos cilindros, secos em estufa para determinação da densidade, estes foram moídos e analisados para determinação do teor de carbono (%). O volume de cada elemento foi calculado pela diferença da área seccional e área oca, multiplicada pelo comprimento; a biomassa foi calculada multiplicando o volume pela densidade; e o estoque de carbono foi calculado multiplicando a biomassa pela concentração de carbono. Os estimadores do total foram calculados por área e por hectare para o número de elementos de CWD, volume, biomassa e estoque de carbono; foram calculados por estrato, e combinados para a população. Os dados dos 650m de cada unidade foram utilizados para calcular as médias da densidade da madeira e concentração de carbono por classe de decomposição e, para construção de modelos lineares e não-lineares. Para a SSF, o design mais preciso foi transectos em forma de cruz, com 200 m. Para CSS foram selecionados transectos em cruz, com 150 m. As áreas apresentaram valores de biomassa 1.3-6.7 Mg/ha para CSS e SSF, respectivamente. Em ambos tipos florestais foi encontrado que à medida que a classe de decomposição aumenta (mais fresco para mais podre), a densidade da madeira diminui, seguindo os mesmos padrões encontrados na literatura. A concentração de carbono não apresentou mudança dentro das classes de decomposição. Modelos nãolineares com diâmetro e comprimento como variáveis preditoras provaram ser uma ferramenta eficiente para predizer a biomassa e carbono de CWD. Como esperado, os dados de biomassa apresentaram heterocedasticidade, mitigada pela modelagem da variância dos resíduos com uma função de potência. A adição da classe de decomposição como variável indicadora também mostrou melhora nos modelos.

This research examines the relationship between understory plant diversity and logs in a Pacific Northwest (PNW) Sitka spruce (Picea sitchensis)-western hemlock (Tsuga heterophylla) old-growth, coastal forest. These forests are renowned for their high forest productivity, frequent wind storms, and slow log decomposition rates that produce unmatched accumulations of coarse woody debris (CWD) yet few studies have examined the relationship between CWD and understory vegetation ecology. My research addressed this topic by comparing understory plant census data between paired fallen log and forest floor sites (n=20 pairs). My objectives were to: 1) determine the influence of substrate type on community composition and diversity, and 2) examine successional pathways and species assemblage patterns on CWD in various stages of decomposition. To meet these objectives I employed non-metric multidimensional scaling (NMDS) ordinations and unsupervised cluster analyses to identify and compare community assemblages on both substrates. These methods revealed similar species diversity and evenness between log and forest floor sites with compositional differences within and between substrates corresponding to habitat availability for colonization and light and moisture gradients. My results also suggest understory successional pathways related to decay class and characterized by an initial abundance of bryophytes, forbs, and seedlings followed by woody shrubs. Understory communities developing on logs also experienced increasing diversity, evenness, and divergence from forest floor communities consistent with log decomposition. These results differ from findings for boreal forests that reveal increasing similarity between substrate communities with increasing decay class. Recommendations for future research include the employment of a more robust sample size and direct measurements of environmental variables. Additional comparator studies are also needed to confirm the effects of forest type and decomposition on the relationship between CWD and forest understory communities. This study demonstrates how fine-scale wind disturbance fosters biodiversity through the creation of CWD substrate. My results and future research are essential for the development of silvicultural models designed to promote biodiversity in PNW coastal forests.

No description available.