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The influence of silane treated amorphous fumed silica fillers on properties of the cured epoxy was examined in the first part of the study. Silica particles were treated with 3- aminopropyldiethoxymethylsilane (APDS) and 3-aminopropyltriethoxysilane (APTS) coupling agents. The filler and coupling agents decreased the mobility of the polymer chains in the vicinity of the filler leading to an increase in the activation energy for the glass transition and an increase in cooperativity. Fumed silica did not significantly affect moisture diffusion properties. Next, a linear dilatometer was used to investigate the effects of cure conditions, mold types, and the presence of filler in the model epoxy. These studies revealed that there was substantial shrinkage in the cured epoxy on heating it through its glass transition region. The shrinkage was determined to be the result of stress in the epoxy generated during cure and could be minimized by curing at lower temperatures, followed by a postcuring heat treatment. Additional free volume in the sample increased the magnitude of the shrinkage by allowing increased stress release through increased network mobility. Decreasing the polymer mobility by adding fillers decreased the observed shrinkage. The influence of the model epoxy crosslink density was examined by varying the content of 1,4-butanediol in the model system. Addition of 1,4-butanediol led to a decrease in the modulus and glass transition temperature, which resulted in a reduction in residual stress and subsequent shrinkage. Moisture uptake increased with the addition of 1,4-butanediol due to an increase in the free volume of the epoxy. However, even with greater moisture uptake, the addition of 1,4-butanediol to the epoxy increased its adhesion to quartz by promoting lower residual stress and increased energy dissipation. These results indicate that bulk diffusion of water is not the controlling factor in adhesive degradation in this system. / Ph. D.

This work addresses the morphology of the wood/ Phenol-Formaldehyde (PF) adhesive interphase using yellow-poplar. In this case, morphology refers to the scale or dimension of adhesive penetration into wood. The objective is to develop methods for revealing ever smaller levels of wood/resin morphology. Dynamic techniques that are commonly utilized in polymer blend studies are investigated as potential methods for probing the wood/ adhesive interphase morphology. These are Dynamic Mechanical Analysis (DMA) and solid state NMR using CP/MAS. PF resin molecular weight is manipulated to promote or inhibit resin penetration in wood, using a very low or a very high molecular weight PF resin. With DMA, the influence of PF resin on wood softening is investigated. It is first demonstrated that the cooperativity analysis according to the Ngai coupling model of relaxation successfully applies to the in-situ lignin glass transition of yellow-poplar and spruce woods. No significant difference in intermolecular coupling is detected between the two woods. It is then demonstrated that combining simple DMA measurements with the cooperativity analysis yields ample sensitivity to the interphase morphology. From simple DMA temperature scans, a low molecular weight PF (PF-Low) does not influence lignin glass transition temperature. However, the Ngai coupling model of relaxation indicates that intermolecular coupling is enhanced with the low molecular weight PF. This behavior is ascribed to the low molecular weight PF penetrating lignin on a nanometer scale and polymerizing in-situ. On the other hand, a high molecular weight resin with a broad distribution of olecular weights (PF-High) lowers lignin glass transition temperature dramatically. This plasticizing effect is ascribed to a small fraction of the PF resin being low enough in molecular weight to penetrate lignin on a nanoscale, but being too dispersed for forming a crosslinked network. With CP/MAS NMR, intermolecular cross-polarization experiments are found unsuitable to probe the angstrom scale morphology of the wood adhesive interphase. However, observing the influence of the PF resins on the spin lattice relaxation time in the rotating frame, HT1r, and the cross-polarization time (TCH) is useful for probing the interphase morphology. None of the resins significantly affects the cross-polarization time, suggesting that angstrom scale penetration does not occur with a low nor a high molecular weight PF resin. However, the low molecular weight PF substantially modifies wood polymer HT1r, indicating that the nanometer scale environment of wood polymers is altered. On the other hand, the high molecular weight PF resin has no effect on wood HT1r. On average, the high molecular weight PF does not penetrate wood on a nanometer scale. Interestingly, the low molecular weight PF resin disrupts the spin coupling that is typical among wood components. Spin coupling between wood components is insensitive to the high molecular weight PF. Finally, it is noteworthy that the two PF resins have significantly different T1r 's in-situ. The low molecular weight resin T1r lies within the range of wood relaxations, suggesting some degree of spin coupling. On the other hand, the T1r of the high molecular weight PF appears outside the range of wood relaxations. Spin coupling between the high molecular weight resin and wood components is therefore inefficient. The CP/MAS NMR and DMA studies converge to identify nanometer scale penetration of the low molecular weight PF in wood. On the other hand, the high molecular weight PF resin forms separate domains from wood, although a very small fraction of the PF-High is able to penetrate wood polymers on a nanoscale. / Ph. D.

Physical aging measurements were performed on various polymeric glasses with the overriding goal of developing a better molecular picture of the nonequilibrium glassy state. To this end, aging-induced changes in mechanical properties and in the thermodynamic state (volume and enthalpy) were assessed for two different miscible polymer blends as a function of both composition and aging temperature. This investigation considered the physical aging behavior of blends containing atactic polystyrene (a-PS) and poly(2,6-dimethyl-1,4-phenylene oxide) (PPO) as well as mixtures of poly(methyl methacrylate) (PMMA) and poly(styrene-co-acrylonitrile) (SAN). Substantial attractive chemical interactions are characteristic of a-PS/PPO blends but are absent in PMMA/SAN blends. The distinct nature of interactions for these two blends resulted in differences in the compositional dependence of secondary relaxation intensity, segmental cooperativity which dictates glass formation kinetics, and density (prior to aging). The variation of volume relaxation rate with aging temperature and composition was interpreted based upon these characteristics for the two systems. In addition, a general relationship was uncovered which linked structural relaxation rates for amorphous polymers to their respective segmental relaxation characteristics (glass transition cooperativity or fragility), which in turn are well understood from a molecular standpoint. This work, therefore, established a basis for comprehending glassy state volume and enthalpy relaxation rates based upon molecular characteristics. Developing an understanding of the connection between the evolving thermodynamic state and mechanical property changes fared less well. The fact that the thermodynamic and mechanical properties can have very different relaxation time responses governing their changes in the nonequilibrium glassy state was clearly evident in an extensive study of the physical aging characteristics of an amorphous polyimide material. For some materials, interpretation of mechanical aging behavior was obscured by thermorheological complexity arising due to overlap of a secondary relaxation with the main chain softening dispersion. / Ph. D.

Les films de simulations qui accompagnent le document ont été réalisés avec Pymol. / Les protéines accomplissent leur fonction dans la cellule grâce à leur faculté de changer de forme. Chaque classe de protéines peut se caractériser par une structure spécia- lisée partagée par ses membres avec un certain degré de variabilité. Tel est le cas des protéines à motifs mains-EF, qui se transforment en liant et déliant l ’ion calcium. Ce motif permet à la Troponin C de s’ouvrir et se refermer afin de moduler le mécanisme de contraction des fibres musculaires. Un mécanisme similaire permet à la Calmoduline de gérer l’activité de divers canaux cellulaires. Les techniques de simulations numériques peuvent aider à comprendre les trajectoires de ces transformations. Le projet principal de cette thèse consistait à développer une méthode informatique multi-échelle permettant de simuler des mouvements complexes à l’intérieur d ’une protéine. La représentation multi-échelle développée peut changer et s’adapter en cours de simulation. La méthode, ART holographique, explore l’espace en générant des basculements d’ensembles atomiques, selon des champs de force atomistiques non biaisés indiquant à tout moment comment les ensembles doivent pivoter. La méthode réduit le calcul des fluctuations locales mais conserve une représentation spatiale complète. La représentation multi-échelle est combinée à une technique de recherche de passages de transition énergétiquement favorables, ART nouveau, qui conduit la trajectoire moléculaire d ’étape en étape. Appliquée à plusieurs protéines, dont la Calmodulin et la Troponin C, ART holographique génère des trajectoires de transformation entre des conformations distantes de celles-ci, déjà connues grâce aux techniques de RMN ou de cristallographie. L’usage d ’une représentation spatiale complète tout au long de la simulation favorise le discernement de certains détails des mécanismes. Le rôle, l’ordre d ’intervention, ainsi que la coopérativité de certains résidus et structures impliqués dans le mécanisme des paires main-EF ont été explorés plus en détail et un état intermédiaire est proposé. / Proteins accomplish their function inside cells by means of conformational changes. Each protein class may be characterized by a specialized structure shared by its members with some variability. EF-hands proteins present a special motif which transforms itself while binding or unbinding the calcium ion. This structure allows Troponin C domains to open and close as it modulates the muscular fibers contraction. A similar mechanism allow Calmodulin to manage the activity of a diversity of protein channels. Computational techniques may help discover how these transformations occur. The main project of this thesis was the development of a multi-scale computational method for the simulation of complex motions inside a protein. The multi-scale approach is designed to adapt and change all along the simulation. The method, holographic ART, explore conformational space by generating swiveling and rotation of atomic ensembles, leaded by non biased atomistic forcefields. This determines at each step the overall motion, keeping a complete spatial representation, but with minimal local fluctuations computation. The multi-scale representation is combined with a unbiased open ended algorithm for identifying transitions states, ART nouveau, which guides the molecular trajectory from state to state. Applied to several proteins, the method was able to generate transforma- tion trajectories between distant conformations known from NMR and crystallography techniques. The use of a complete spatial representation throughout the simulation allows the method to capture atomistic details of each event. The purpose, the intervention order, as well as cooperativity between some residues and sub-structures involved in the EF-hand pair mechanism have been explored more in detail and an intermediate state is proposed.

The work described in this thesis demonstrates the use of supramolecular chemistry in the template-directed synthesis of porphyrin nanorings and as a tool to control conformation and topology of π-conjugated porphyrin oligomers. Particular emphasis is placed on changes to the electronic structure of these oligomers depending on their conformation. Chapter 1 gives an overview of π-conjugated porphyrin oligomers and conjugated macrocycles in general, followed by an introduction into supramolecular cooperativity and small angle X-ray scattering in solution. Chapter 2 describes advances in the synthesis, solution structure elucidation and optoelectronic properties of a fully conjugated cyclic porphyrin hexamer. The high rigidity and symmetry of this nanoring as well as its bent π-system lead to a significant decrease in its HOMO-LUMO gap. The resulting near-infrared emission was exploited in the fabrication of light emitting diodes, demonstrating the use of a bent topology for minimizing aggregation in thin films. The synthesis of a [12]porphyrin nanoring using a hexadentate template is presented in Chapter 3. The concept of Vernier templating is introduced as a general strategy for the synthesis of large monodisperse macrocycles. The nanoring is characterized and its cooperative binding to two template molecules is studied. In Chapter 4 a bidentate ligand is used in the cooperative formation of a sandwich complex beween two nanorings. Chapter 5 provides an analysis of the rigidity of the butadiyne linked porphyrin oligomers used throughout this thesis. A linear chain is significantly more flexible in solution than on a surface where it is confined within two dimensions. Analysis of the persistence length indicates that a porphyrin nanoring with more than around 20 units would not be significantly strained. The supramolecular binding of linear porphyrin oligomers to carbon nanotubes is analyzed in Chapter 6. The binding strength increases sharply with oligomer length and binding is strongest with (8,6) and (7,5) tubes. The energy level alignment in these porphyrin CNT complexes appears to be favorable for an application in photovoltaics. In Chapter 7 bisamidine-carboxylate salt bridges together with zinc-nitrogen coordination chemistry are used to access a variety of topologies in assemblies based on carboxylic acid functionalized porphyrin dimers.

O diguanilato cíclico (c-di-GMP) é uma molécula de sinalização intracelular que atua na regulação de importantes processos bacterianos como motilidade, formação de biofilme e virulência. As diguanilato ciclases (DGCs), contendo um domínio GGDEF ativo, catalisam a formação de c-di-GMP a partir de duas moléculas de GTP. A bactéria Xanthomonas citri subsp. citri (Xanthomonas axonopodis pv citri; Xac) é o agente causal do cancro cítrico, uma doença que ataca todas as variedades e espécies de citros. O genoma de Xac codifica 31 proteínas contendo domínios GGDEF. Treze destas proteínas possuem também domínios PAS e/ou GAF, que são ubíquos domínios sensores e de sinalização. Para tentar entender melhor o papel na sinalização por c-di-GMP das interações entre domínios GGDEF e domínios PAS e/ou GAF, estudos bioquímicos e funcionais foram realizados com as proteínas XAC0610 e XAC2446. XAC0610 contém um domínio GAF, quatro domínios PAS e um domínio GGDEF conservado. Análises fenotípicas com a linhagem nocaute XacΔ0610 mostraram que XAC0610 atua na regulação da motilidade e sobrevivência de Xac ao tratamento com H2O2. Ensaios de atividade enzimática demonstraram que XAC0610 é uma DGC cataliticamente ativa, e que a mutação sítio-dirigida de um resíduo conservado de lisina (Lys759) provoca uma grande redução na atividade de DGC. Os domínios GAF e PAS de XAC0610 aparentemente não atuam como domínios sensores, entretanto são importantes para a dimerização da proteína, necessária para a obtenção de altos níveis de atividade de DGC. Além disso, várias observações sugerem que XAC0610 não é submetida à inibição alostérica pelo produto, um mecanismo regulatório comumente utilizado para o controle da atividade de DGC. Por outro lado, os dados de cinética enzimática de XAC0610HIS-35-880 revelaram um efeito de cooperatividade positiva para a ligação dos substratos, com uma constante de dissociação para a ligação da primeira molécula de GTP (K1) cerca de 3-5 vezes maior que a constante de dissociação para a ligação da segunda molécula de GTP (K2). A partir deste estudo, nós apresentamos um esquema cinético geral mais apropriado para as análises dos dados cinéticos de enzimas DGCs e propomos que a ligação cooperativa do substrato talvez possa desempenhar um importante papel na regulação in vivo da atividade de algumas DGCs, aumentando sua sensibilidade a pequenas variações nos níveis celulares de GTP. Outra proteína caracterizada neste trabalho, XAC2446 possui um domínio GAF e um domínio GGDEF que, ao contrário do domínio GGDEF de XAC0610, não deve apresentar atividade de DGC. Mesmo assim, análises funcionais mostraram que XAC2446 regula negativamente a formação de biofilme e positivamente a motilidade de Xac. Ensaios de duplo híbrido em leveduras identificaram que XAC2446 interage com XAC2897, contendo um domínio GGDEF potencialmente ativo, e XAC1185, contendo um domínio HD fosfohidrolase de (p)ppGpp. Alguns estudos indicam que altos níveis celulares de c-di-GMP e baixos níveis de (p)ppGpp podem ser necessários durante a formação de biofilme. XAC2446 talvez possa atuar como um inibidor da atividade enzimática de XAC2897 e XAC1185 e influenciar, indiretamente e antagonicamente, tanto os níveis celulares de c-di-GMP quanto de (p)ppGpp. / Cyclic di-GMP is a bacterial second messenger that regulates a range of functions, including cellular motility, biofilm formation and virulence. This molecule is produced from two GTP substrates by the activity of diguanylate cyclases (DGCs) containing a GGDEF domain. The phytopathogenic bacteria Xanthomonas citri subsp. citri (Xanthomonas axonopodis pv citri; Xac) causes citrus canker in a wide variety of citrus species. The Xac genome codes for 31 proteins with GGDEF domains. Thirteen of the 31 Xac GGDEF domain-containing proteins also possess PAS (Per-Arnt-Sim) or GAF (cGMP-specific phosphodiesterases, adenylyl cyclases and FhlA) domains that are ubiquitous signaling and sensory domains. In order to better understand the relationship between these commonly associated domains, biochemical and functional studies were carried out with the XAC0610 and XAC2446 proteins. XAC0610 is a large multi-domain protein containing one GAF domain, four PAS domains and one GGDEF domain. This protein has a demonstrable in vivo and in vitro diguanylate cyclase (DGC) activity. Analysis of a XacΔ0610 knockout strain revealed that XAC0610 plays a role in the regulation of Xac motility and resistance to H2O2. Site-directed mutagenesis of a conserved DGC lysine residue (Lys759 in XAC0610) resulted in a severe reduction in XAC0610 DGC activity. XAC0610 DGC activity was also impaired by removal of the N-terminal GAF and PAS domains, which are probably needed for proper protein dimerization. Furthermore, experimental and in silico analysis suggest that XAC0610 is not subject to allosteric product inhibition, a common regulatory mechanism for DGC activity control. Instead, steady-state kinetics of XAC0610 DGC activity revealed a positive cooperative effect of the GTP substrate with a dissociation constant for the binding of the first GTP molecule (K1) approximately three to five times greater than the dissociation constant for the binding of the second GTP molecule (K2). We present a general kinetics scheme that should be used when analyzing DGC kinetics data and propose that cooperative GTP binding could be a common, though up to now overlooked, feature of these enzymes that may in some cases offer a physiologically relevant mechanism for regulation of DGC activity in vivo. The other characterized protein, XAC2446, has a GAF domain and a degenerated GGDEF domain. Unlike XAC0610, XAC2446 should not present DGC activity. Nevertheless, functional analysis of XAC2446 demonstrated that it plays a role in the regulation of Xac motility and biofilm formation. A yeast two-hybrid screen identifies XAC2897 (a potentially active GGDEF domain-containing protein) and XAC1185 (a (p)ppGpp hydrolase) as specific binding partners of the XAC2446 protein. As indicated by studies in other bacteria, high cellular levels of c-di-GMP and low levels of (p)ppGpp may be both required for biofilm formation. It is possible that XAC2446 might have a role in the antagonistic regulation of c-di-GMP and (p)ppGpp cellular levels by acting as an inhibitor of both XAC2897 and XAC1185 enzymatic activities.

Ce travail de thèse est consacré à l’élaboration de composés à transition de spin et l’étude de leurs propriétés induites par irradiation lumineuse ou par une variation de la température. L’induction à l’état solide de la transition de spin par la lumière, via les effets appelés Light-Induced Excited Spin State Trapping (LIESST) et Ligand Driven Light-Induced Spin Change (LD-LISC)) a été étudiée. La préparation de nanoparticules et leur mise en forme ont été ensuite développées à partir de composés à transition de spin de nature moléculaire, puis leurs propriétés de commutation ont été examinées. Deux familles de matériaux aux propriétés optimisées pour l’étude du mécanisme de photo-conversion par effet LIESST aux temps ultra-courts ont été examinées et les premiers résultats de mesures résolues en temps sont présentés. Par ailleurs, l’étude de l’effet photomagnétique LD-LISC a été menée avec les composés de FeII(stpy)4(NCSe)2 (stpy = 4-styrylpyridine, ligand photo-isomérisable), soit en dispersant les composés dans une matrice polymérique, soit à l’état cristallin. L’influence du milieu sur la photo-réactivité du composé a été démontrée et, dans le solide cristallin, une isomérisation unidirectionnelle du ligand stpy via un mécanisme original mettant en jeu des états excités MLCT a été mise en évidence. Le développement de méthodes originales permettant la préparation de nanoparticules à transition de spin à partir de composés moléculaires a été effectuée. Tout d’abord, la chimie sol-gel a été utilisée afin d’obtenir des nano-objets dispersés dans un film mince de silice. Cette approche élégante a permis un bon contrôle de la taille des objets et l’obtention de solides de bonne qualité optique, dans lesquels une conversion thermo- et photo-induite a été observée avec le composé [FeII(mepy)3tren](PF6)2. Une autre méthode de synthèse, consistant en la précipitation rapide d’objets, éventuellement limitée par la présence de polymère a été appliquée avec succès à l’étude de plusieurs composés moléculaires à transition de spin. Avec le composé [FeIII(3-OMeSalEen)2]PF6, des objets de taille contrôlée ont été synthétisés et, de manière remarquable, un effet, relativement faible, de la réduction de taille sur la coopérativité a été observé. Enfin, l’étude de microcristaux FeII(phen)2(NCS)2, a permis de démontrer de manière indiscutable que la présence de polymère enrobant les objets pouvait influer sur leur transition thermo- et photo-induite en induisant des contraintes au niveau des particules. / This work is devoted to synthesis of spin-crossover compounds and to the study of their thermo- or photo-induced switching. Photo-induced spin-crossover, either by the Light-Induced Excited Spin State Trapping (LIESST) or the Ligand Driven Light-Induced Spin Change (LD-LISC)) effects, has been studied in the solid state. The synthesis of spin-crossover nanoparticles built with compounds of molecular nature and the study of their switching properties has then been examined. The synthesis of optimized materials for the study of the photo-switching mechanism (LIESST effect) at ultrafast timescales has been developed and the first time-resolved measurements are presented. The study of the LD-LISC effect on the FeII(stpy)4(NCSe)2 (stpy = 4-styrylpyridine, photo-isomerizable ligand) complexes has also been performed, either bydispersing the compound in a polymeric matrix, or on the crystalline state. Different photo-induced behaviours have been evidenced, depending on the compound environment. On thecrystalline state, a unidirectional reactivity of the stpy ligand through an original mechanism following the excitation in the MLCT excited states has been evidenced. The synthesis of spin-crossover nanoparticles with compounds of molecular nature has then been performed with two different methods. First, the sol-gel process has been used to obtain well dispersed nanoparticles in a silica thin film. This approach allows the synthesis of size-controlled particles trapped on solids of good optical quality, in which a thermo- and photo-induced spin crossover has been observed with the [FeII(mepy)3tren](PF6)2 compound. Another synthetic method, based on the precipitation in an anti-solvent, has been successfully applied to various spin-crossover complexes. With the [FeIII(3-OMeSalEen)2]PF6 compound, size-controlled particles have been prepared and, interestingly, the size reduction effect on the cooperative processes appears to be limited. Finally, the study of FeII(phen)2(NCS)2 microcrystals has evidenced that the interaction between the polymer and the particles can affect their thermo- and photo-induced spin-crossover processes.

O diguanilato cíclico (c-di-GMP) é uma molécula de sinalização intracelular que atua na regulação de importantes processos bacterianos como motilidade, formação de biofilme e virulência. As diguanilato ciclases (DGCs), contendo um domínio GGDEF ativo, catalisam a formação de c-di-GMP a partir de duas moléculas de GTP. A bactéria Xanthomonas citri subsp. citri (Xanthomonas axonopodis pv citri; Xac) é o agente causal do cancro cítrico, uma doença que ataca todas as variedades e espécies de citros. O genoma de Xac codifica 31 proteínas contendo domínios GGDEF. Treze destas proteínas possuem também domínios PAS e/ou GAF, que são ubíquos domínios sensores e de sinalização. Para tentar entender melhor o papel na sinalização por c-di-GMP das interações entre domínios GGDEF e domínios PAS e/ou GAF, estudos bioquímicos e funcionais foram realizados com as proteínas XAC0610 e XAC2446. XAC0610 contém um domínio GAF, quatro domínios PAS e um domínio GGDEF conservado. Análises fenotípicas com a linhagem nocaute XacΔ0610 mostraram que XAC0610 atua na regulação da motilidade e sobrevivência de Xac ao tratamento com H2O2. Ensaios de atividade enzimática demonstraram que XAC0610 é uma DGC cataliticamente ativa, e que a mutação sítio-dirigida de um resíduo conservado de lisina (Lys759) provoca uma grande redução na atividade de DGC. Os domínios GAF e PAS de XAC0610 aparentemente não atuam como domínios sensores, entretanto são importantes para a dimerização da proteína, necessária para a obtenção de altos níveis de atividade de DGC. Além disso, várias observações sugerem que XAC0610 não é submetida à inibição alostérica pelo produto, um mecanismo regulatório comumente utilizado para o controle da atividade de DGC. Por outro lado, os dados de cinética enzimática de XAC0610HIS-35-880 revelaram um efeito de cooperatividade positiva para a ligação dos substratos, com uma constante de dissociação para a ligação da primeira molécula de GTP (K1) cerca de 3-5 vezes maior que a constante de dissociação para a ligação da segunda molécula de GTP (K2). A partir deste estudo, nós apresentamos um esquema cinético geral mais apropriado para as análises dos dados cinéticos de enzimas DGCs e propomos que a ligação cooperativa do substrato talvez possa desempenhar um importante papel na regulação in vivo da atividade de algumas DGCs, aumentando sua sensibilidade a pequenas variações nos níveis celulares de GTP. Outra proteína caracterizada neste trabalho, XAC2446 possui um domínio GAF e um domínio GGDEF que, ao contrário do domínio GGDEF de XAC0610, não deve apresentar atividade de DGC. Mesmo assim, análises funcionais mostraram que XAC2446 regula negativamente a formação de biofilme e positivamente a motilidade de Xac. Ensaios de duplo híbrido em leveduras identificaram que XAC2446 interage com XAC2897, contendo um domínio GGDEF potencialmente ativo, e XAC1185, contendo um domínio HD fosfohidrolase de (p)ppGpp. Alguns estudos indicam que altos níveis celulares de c-di-GMP e baixos níveis de (p)ppGpp podem ser necessários durante a formação de biofilme. XAC2446 talvez possa atuar como um inibidor da atividade enzimática de XAC2897 e XAC1185 e influenciar, indiretamente e antagonicamente, tanto os níveis celulares de c-di-GMP quanto de (p)ppGpp. / Cyclic di-GMP is a bacterial second messenger that regulates a range of functions, including cellular motility, biofilm formation and virulence. This molecule is produced from two GTP substrates by the activity of diguanylate cyclases (DGCs) containing a GGDEF domain. The phytopathogenic bacteria Xanthomonas citri subsp. citri (Xanthomonas axonopodis pv citri; Xac) causes citrus canker in a wide variety of citrus species. The Xac genome codes for 31 proteins with GGDEF domains. Thirteen of the 31 Xac GGDEF domain-containing proteins also possess PAS (Per-Arnt-Sim) or GAF (cGMP-specific phosphodiesterases, adenylyl cyclases and FhlA) domains that are ubiquitous signaling and sensory domains. In order to better understand the relationship between these commonly associated domains, biochemical and functional studies were carried out with the XAC0610 and XAC2446 proteins. XAC0610 is a large multi-domain protein containing one GAF domain, four PAS domains and one GGDEF domain. This protein has a demonstrable in vivo and in vitro diguanylate cyclase (DGC) activity. Analysis of a XacΔ0610 knockout strain revealed that XAC0610 plays a role in the regulation of Xac motility and resistance to H2O2. Site-directed mutagenesis of a conserved DGC lysine residue (Lys759 in XAC0610) resulted in a severe reduction in XAC0610 DGC activity. XAC0610 DGC activity was also impaired by removal of the N-terminal GAF and PAS domains, which are probably needed for proper protein dimerization. Furthermore, experimental and in silico analysis suggest that XAC0610 is not subject to allosteric product inhibition, a common regulatory mechanism for DGC activity control. Instead, steady-state kinetics of XAC0610 DGC activity revealed a positive cooperative effect of the GTP substrate with a dissociation constant for the binding of the first GTP molecule (K1) approximately three to five times greater than the dissociation constant for the binding of the second GTP molecule (K2). We present a general kinetics scheme that should be used when analyzing DGC kinetics data and propose that cooperative GTP binding could be a common, though up to now overlooked, feature of these enzymes that may in some cases offer a physiologically relevant mechanism for regulation of DGC activity in vivo. The other characterized protein, XAC2446, has a GAF domain and a degenerated GGDEF domain. Unlike XAC0610, XAC2446 should not present DGC activity. Nevertheless, functional analysis of XAC2446 demonstrated that it plays a role in the regulation of Xac motility and biofilm formation. A yeast two-hybrid screen identifies XAC2897 (a potentially active GGDEF domain-containing protein) and XAC1185 (a (p)ppGpp hydrolase) as specific binding partners of the XAC2446 protein. As indicated by studies in other bacteria, high cellular levels of c-di-GMP and low levels of (p)ppGpp may be both required for biofilm formation. It is possible that XAC2446 might have a role in the antagonistic regulation of c-di-GMP and (p)ppGpp cellular levels by acting as an inhibitor of both XAC2897 and XAC1185 enzymatic activities.