Weed infestation is one of the yield limiting factors in crop production. Weeds have negative effect on crop growth and productivity due to competition, allelopathy or hosting other harmful organisms. For large-scale wheat production, the use of wide spectrum pre-emergence or post-emergence herbicides remains the most valuable weed control tool. In South Africa, annual grass weeds are a major wheat production constraint, which is usually managed through application of pre-emergence herbicides. Due to limited water availability and low soil moisture content, these herbicides can often become ineffective and result into high weed infestations, which then have to be managed by manual cultivation or post-emergence herbicidal applications. However, there are no effective selective post-emergence herbicides available to control grass weeds in wheat. There is also limited option to use broad-spectrum post-emergent herbicides because they non-selectively kill the crop and weeds. Consequently, the use of herbicide resistant crops is a viable weed management system in wheat production. Breeding herbicide resistant crop varieties would allow farmers to safely use post-emergence herbicides without damaging the crop. Subsequently yield and quality losses will be reduced significantly. Thus, the development of herbicide resistant crop varieties through mutation breeding is a novel approach for effective weed management under both small-scale and commercial farmers. Mutagenesis has been recognized as one of the most efficient method to induce genetic variation in plants. Through induced mutations, development of new variants is possible that could be manipulated in plant breeding programs. Mutation leads to alteration of various traits in crop plants including plant height, improved nutritional quality, shorter growing period, increased tolerance or resistance to abiotic and biotic stresses. Ethylmethanesulphonate (EMS) is one of the most widely used chemical mutagens to induce mutagenesis in crop plants. The objectives of this study were to: 1) determine the optimum EMS concentration, treatment temperature and duration that would provide desired germination percentage and vigorous and healthy seedlings for effective mutagenesis in wheat, 2) investigate variations in agro-morphological traits in two selected wheat varieties (SST56 and SST875) after EMS mutagenesis and 3) select herbicide resistant wheat germplasm after inducing genetic variation using EMS using two selected wheat varieties (SST56 and SST875). The objectives were achieved through three independent studies as outlined below: In the first study seeds of four selected wheat varieties (B936, B966, SST387 and SST875) were treated in two replicates with three EMS concentrations (0.3, 0.5, and 0.7%), three temperature regimes (30, 32.5 and 35 °C) at four time durations (0.5, 1, 1.5 and 2 hrs). Results showed highly significant interactions (P<0.01) among varieties, EMS concentrations, temperature and exposure time on seedling emergence, germination and seedling height. Seeds treated with the highest EMS dose (0.7%), temperature (35ºC) and long exposure time (2 hr) showed delayed emergence by 18 days. At 30ºC, 0.5hr and 0.3% EMS varieties B936, B966 and SST875 had early emergence (6 days). B936 and SST387 had 50% while B966 and SST875 had 53% and 57% germination, respectively. These results were observed at EMS level of 0.7%, 300C and 1.5 hr exposure time in B936 and EMS at 0.5%, 350C and 1.5 hr in B966. SST387 and SST875 required EMS dose at 0.5%, 32.50C and 2 hr treatment time. Other low or high treatment combinations were invariably ineffective comparedto untreated control. During the second study two selected varieties (SST56 and SST875) were subjected to EMS mutagenesis using 0.5% v/v EMS at 32.5oC for 1 hr. Field trials were carried out at Ukulinga research farm of the University of KwaZulu-Natal in the randomized complete block design with two replicates. Data on nine important agro-morphological traits were collected and analyzed using the analysis of variance (ANOVA), correlation and principal component analysis (PCA) procedures. Significant variations were found among the agro-morphological traits between M1 individuals compared to untreated checks. The mutagenesis significantly reduced seed germination in the field at 40% in both varieties. The treatment significantly delayed days to heading by 8 days and shortened days to maturity by 13 days in both varieties. EMS treatment also significantly reduced plant height at 18 cm in SST56 and 21 cm in SST875 and spike length reduced by ~2.5 cm in both varieties. Plant height had positive and significant correlation with number of tillers, number of seeds per spike, flag leaf length and 100 seed weight. However, it had negative correlation with the number of days to maturity. The PCA revealed that three principal components (PC1, PC2 and PC3) accounted to 57% of the total variations among the agro-morphological traits in both varieties. PC1 alone contributed to 27.7% of the variation which was well-correlated with plant height (0.767), tiller number (0.812), number of seeds per spike (0.599) and seed yield (0.720). PC2 explained 15.6% of the variation and well-correlated with germination percentage (0.784), spike length (0.554) and flag leaf length (0.772). PC3 accounted to 12.4% of the variation and had negative correlation with days to maturity (-0.730). In the last study, seeds of two selected wheat varieties (SST56 and SST875) were treated with EMS at 0.5% concentration for 2 hr at 32.5ºC. Treated seeds and comparative controls were planted at the experimental farm of the University of KwaZulu-Natal using the randomized complete block design. Four weeks after planting M1 plants and untreated standard checks were sprayed with two herbicides, i.e. metsulfuron-methyl and bromoxynil at three different doses viz. 2x, 4x and 8x above the recommended rate of 4 g ha-1 and 2 kg ha-1, respectively. Two weeks after the treatment herbicide resistance were assessed. Results showed significant difference among varieties, tested herbicides and doses used. The EMS treated wheat lines showed variable degree of herbicide resistance compared to untreated controls. Overall, the study established the requirement of variety specific EMS dose and treatment temperature and duration that could be used for inducing large-scale mutation to select targeted mutant individuals in wheat. Further, the study found that EMS has the potential to increase agro-morphological variations in wheat to select useful and novel mutants with desired phenotypic traits and herbicide resistance which will be subjected for further selections to identify stable and herbicide resistance lines. / Thesis (M.Sc.Agric.)-University of KwaZulu-Natal, Pietermaritzburg, 2012.

South African ‘Eureka’ lemon fruit must be exposed to chilling temperatures (± 0.6°C) as a mandatory quarantine treatment against insect pests for all its overseas markets. Chilling lemon fruit at such temperatures may develop chilling injury (CI) symptoms on the flavedo. This negative effect on fruit quality reduces fruit marketability. This study evaluated postharvest factors influencing physiological, biochemical and ultra-structural mechanisms involved in alleviating CI in lemon fruit. It was hypothesised that treatment with methyl jasmonate (MJ) and salicylic acid (SA) may enhance chilling tolerance in lemon fruit by maintaining cellular integrity and inducing synthesis of enzymatic and non-enzymatic antioxidants. Furthermore, fruit susceptibility to CI was associated with the source of fruit. Lemon fruit were harvested from three locations representative of moderate subtropical, warm temperate and cool subtropical environments. Harvested fruit were treated either with 10 μM MJ, 2 mM SA or 10 μM MJ plus 2 mM SA, stored either at -0.5, 2 or 4.5°C for 0, 7, 14, 21, or 28 days and afterwards transferred to 23°C for a week as shelf-life simulation. Thereafter, fruit were evaluated for alterations in physiological, biochemical and ultra-structural features involved in the manifestation of CI symptoms. Chilling damage was more severe in untreated lemon fruit than in treated lemon fruit. Storing lemon fruit at 4.5°C accelerated the manifestation of CI symptoms more so than at 2°C while storage at -0.5°C delayed the manifestation of CI symptoms. Lemon fruit of moderate subtropical origin were more chilling-tolerant than lemon fruit of warm temperate and cool subtropical origin. Treatment with 10 μM MJ plus 2 mM SA significantly (P < 0.05) improved chilling tolerance in lemon fruit. This treatment effectively maintained membrane integrity, thereby retarding electrolyte leakage and membrane lipid peroxidation as well as mass loss and respiration rate. Treatment with 10 μM MJ plus 2 mM SA was also effective in enhancing the antioxidant concentrations of vitamin E and carotenoids. The production of these antioxidants could have been part of a defence system against chilling damage, reducing CI and maintaining fruit quality. Treatment with 10 μM MJ plus 2 mM SA enhanced the concentration of compounds involved in chilling resistance, such as proline, soluble sugars, ascorbic acid and total phenolics as well as the enzyme phenylalanine ammonia-lyase (PAL). The enhancement of the defence mechanisms may have played a role in enhancing chilling tolerance in lemon fruit. The treatment also inhibited certain enzymes involved in tissue browning, such as peroxidase (POD) which might have contributed to delaying manifestation of symptoms. Polyphenol oxidase (PPO) was found to not be a good biochemical marker of the occurrence of CI. Treatment with 10 μM MJ plus 2 mM SA appeared to be able to enhance chilling tolerance in lemon fruit by maintaining the ultra-structure of the cuticle, cell wall integrity, cell membrane of parenchyma cells of the flavedo. This treatment also preserved the mineral nutrients of the flavedo (carbon, oxygen, phosphorus, potassium, calcium, magnesium, sulphur, sodium, silicon and aluminium) during cold storage. This could have played a role in protecting the fruit against chilling stress and maintaining fruit quality. Treatment with 10 μM MJ plus 2 mM SA reduced ROS production, while the activity of enzymatic antioxidants such as catalyse (CAT), ascorbate peroxidase (APX) and glutathione reductase (GR), and accumulation of essential proteins was enhanced. This increase in activity of enzymatic antioxidants and the presence of stress-responsive proteins in the lemon flavedo could have been directly involved in enhancing chilling tolerance. The CI symptoms were accompanied by an increase in membrane permeability, membrane lipid peroxidation as well as phospholipase D (PLD) and lipoxygenase (LOX) activity; however, treatment with 10 μM MJ plus 2 mM SA effectively reduced the membrane permeability, membrane lipid peroxidation, and PLD and LOX activity induced by the cold treatment. This could have contributed to the efficacy of 10 μM MJ plus 2 mM SA in inhibiting the manifestation of CI symptoms. Treatment with 10 μM MJ plus 2 mM SA enhanced flavedo total antioxidant capacity measured by ferric reducing ability of plasma; 2,2-diphenyl-1-picrylhydrazyl; 2,2-azinobis (3-ethyl-benzothiazoline-6-sulfonic acid) and the oxygen radical absorption capacity assays. The enhancement of antioxidant capacity in lemon flavedo could have contributed to the fruit’s chilling tolerance. Therefore, the effect of 10 μM MJ plus 2 mM SA treatment, enhancing chilling tolerance, may be attributed to its ability to enhance enzymatic and non-enzymatic antioxidants; activate essential proteins and mitigate the effect of ROS accumulation. With the use of 10 μM MJ plus 2 mM SA treatments, the South African citrus industry will be able to meet the quarantine temperature requirements for exportation of lemon fruit whilst reducing economic losses, depending on the preharvest conditions experienced by the fruit in each shipment. / Thesis (Ph.D.)-University of KwaZulu-Natal, Pietermaritzburg, 2013.

Molecular markers were used in an attempt to determine the phylogenetic relationships of hexaploid wheats within Triticum aestivum L. and to identify wheat cultivars. Random amplified polymorphic DNA (RAPD), restriction fragment length polymorphism (RFLP), gliadin protein and cytological analyses were used to assess phylogenetic relationships among five morphological groups of hexaploid wheat, namely, macha, common wheat, spelta, vavilovii and semi-wild wheat (SWW). RAPD and gliadin data were analysed using the NTSYS-pc computer program to generate Jaccard genetic similarity coefficients. Coefficients of genetic similarity in the cytological study were calculated based on the number of chiasmata in hybrids. Dendrograms were constructed based on these coefficients. The dendrogram based on RAPD analysis grouped 15 accessions into five distinct clusters which were in agreement with the morphology-based classification. The results indicated that common wheat was closely related to vavilovii. Spelta was less related to the common and vavilovii wheat cluster. SWW was distantly related to common wheat. Macha was the least related to the previous clusters. These results were consistent with those based on cytological analysis. The results of gliadin analysis were not completely consistent with those based on RAPD and cytological analyses. RFLP data showed that it was difficult to determine phylogenetic relationships among the five groups of hexaploid wheat based on variation in the intergenic spacer region of the 18-25S rRNA unit. Polymerase chain reaction analysis of the 5S rRNA unit and the internal transcribed spacer of the 18-25S rRNA unit did not show any polymorphism among and within the five groups of hexaploid wheat. Twelve mis-classified Triticum accessions were found in macha and vavilovii wheat collections and investigated using RAPD and cytological analyses. A dendrogram based on RAPD analysis classified the 12 accessions into either T. monococcum, T. turgidum spp. dicoccum or T. timopheevii. The results were in agreement with cytogenetic data and morphological observations. The genetic diversity of spelta and macha wheat was also investigated using RAPD analysis and the results were generally consistent with geographic origins. Macha wheat germplasm was found slightly more diverse than spelta wheat although macha has a restricted geographic origin. In addition, duplicate accessions of macha and spelta were identified based on RAPD analysis. In the study of wheat cultivar identification and pedigree assessment, 29 cultivars were investigated using RAPD analysis. Cultivar specific markers were found, and at least eight cultivars could be identified using these specific markers. Cultivar relationships based on genetic similarity values were consistent with knownpedigrees. The study demonstrated that RAPD analysis can be used for estimating the phylogenetic relationships among the five groups of hexaploid wheat, reclassifying misclassified wheat germplasm, surveying the genetic diversity of spelta and macha wheat and identifying common wheat cultivars and duplicated accessions in wheat germplasm collections.

Plant promoters are the principle cis-acting regulatory sequences responsible for the temporal and spatial expression of genes. One method for isolating plant promoters is based on the ability of a common soil bacterium, <i> Agrobacterium tumefaciens </i>, to transfer a specific segment of DNA (T-DNA) into plant cells. This specific T-DNA has been shown to integrate stably into the recipient plant genome. If the T-DNA contains a promoterless marker gene, then T-DNA integration events occurring adjacent and downstream to a promoter region can be detected by the activation of the marker gene. These T-DNA-mediated gene fusions, consisting of an unknown plant promoter sequence and the coding sequence of a marker gene, can be isolated using the marker gene as a promoter tag. The key objective of this work was to develop a novel, bifunctional selectable marker gene and assess its use as: a selectable marker gene in bacterial and plant transformation systems, and as a promoter tag for T-DNA promoter-tagging studies in dicots. A bifunctional fusion gene was produced between phosphinothricin acetyltransferase and neomycin phosphotransferase (PAT::NPT II), by fusing an NPT II coding sequence to the 3' terminus of the PAT gene. The PAT gene product confers tolerance to a non-selective herbicide L-phosphinothricin (Ignite, Hoechst AG). The neomycin phosphotransferase ('npt II') gene allows for direct selection of transformed cells with the antibiotic, kanamycin. Using an <i>in vivo Escherichia coli </i> selection system, a translational fusion gene between these two reporter genes was achieved. The resulting protein had activities of both parent enzymes. This was demonstrated both in transformed <i>Escherichia coli</i> and in transformed <i>Nicotiana tabacum</i> and <i>Brassica napus</i> plants. Using this bifunctional selectable marker gene, a T-DNA promoter tagging vector, pBAU2, was constructed and its utility was demonstrated in <i>Nicotiana tabacum</i>. One of the <i>N. tabacum</i> promoter tagged events was selected for subsequent promoter isolation studies. The promoter from this regenerant was isolated by screening a Lambda subgenomic library and also by thermal asymmetric interlaced (TAIL-)PCR. The isolated upstream regulatory sequence was fused to a reporter gene, â-glucuronidase ('gus'), and subjected to a preliminary evaluation in <i> Nicotiana tabacum</i> and in <i>Brassica napus</i>.

In recent years research has shown that exposing seed to smoke or smoke solutions results in increased germination of some, but not all the species tested. Tests showed that exposing seeds of some commercial crops to smoke increased early plant growth. The stimulatory effects of smoke were shown to benefit the germination of species regardless of whether or not fire played a part of the species ecological cycle. In commercial forest nurseries any method of increasing the recovery rate of seed presents opportunities for realising savings of related production costs. Greater recovery rates of genetically improved seed present opportunities for capturing more related growth in field operations. Improving efficiencies of seed recovery at an early point in the production chain have multiplied effects further on down the chain. Two species of pine, namely Pinus taeda and Pinus elliottii that do not generally present high rates of germination were selected to test if applications of smoke solution could increase germination or emergence rates by more than 5%. As seed of both species are known to respond positively to existing seed pre-treatments the effects of smoke needed to be tested in combination, and apart from the pre-treatments. A secondary aim of the study was to examine the effect of smoke on early plant growth. Attempts to optimizes the concentration of the smoke solution were not undertaken as part of this study, as a rinsing treatment, included in the trials, is known to remove any inhibitory effects of a high concentration of the smoke solution. Tests to determine the variability of the seedlots was carried out for statistical purposes. The interaction between smoke application and pre-treatments were tested, firstly in Petri dishes under controlled environmental conditions, and then in nursery trays under standard commercial nursery conditions for both species. The inclusion of smoke in combination with the target moisture stratification (TMS and rinse pre treatment) had a significantly positive effect on P. taeda in a controlled environment. The same combination did not yield a positive results when tested under nursery conditions. Recommendations are made regarding future tests to see if the beneficial combination found in the controlled environment could be replicated under nursery conditions. Further motivation for conducting the tests exists in that the particular combination set gave significantly better early plant growth under nursery conditions. No other combinations tested yielded positive results. / Thesis (M.Sc.)-University of KwaZulu-Natal, Pietermaritzburg, 2008.

Sugarcane plants (cultivar NCo376) were studied to assess the effects of temperature and season (spring and autumn equinox) on the morphological and physiological response of stalk components. Plants were grown from single-eyed setts for ca. five months and then placed into three temperature controlled glasshouses (22/12°C (C), 27/17°C (W) and 32/22°C (H) day/night temperatures). The plants were sampled twice weekly over a one month period., and intemodes 4, 6 and 10 of the primary haulms of each plant sampled for growth and sugar analysis. During spring, the leaf emergence rates were 0.0303, 0.1095 and 0.1682 leaves d(-1) at temperatures C, W and H, respectively; and 0.0327, 0.0824 and 0.113 leaves d(-1) in autumn. The phyllochron intervals were 114°Cd in spring and 147°Cd in autumn. Highest green leaf blade area of the primary haulms was achieved at H (438.0 and 511.7 cm2 in spring and autumn, respectively). The stalk extension rates were 1.22, 1.02, 0.38 cm d(-1) (spring) and 1.35, 0.98, 0.45 cm d(-1) (autumn), respectively, in descending order of temperature. Total biomass and stalk biomass per plant were not affected by temperature, despite the differences in stem elongation. Internodes of plants at C were shorter but thicker and heavier than the comparable internodes of plants at W and H. In autumn, the mature internode sucrose concentrations were 35.5, 29.2 and 25.5% at C, W and H, respectively; corresponding to mean RS% of 5.7, 9.8 and 13.3%, and fibre % of 58.8, 61.1 and 61.3%, at the respective ascending order of temperature. Sucrose % in the mature internodes in spring were 27.8, 20.9 and 19.9% at C, W and H, respectively; corresponding to RS% of 5.9, 9.76 and 10.9% and fibre % of 66.3, 69.4 and 69.2% at the respective ascending order of temperature. Temperature effect on the concentration of the stalk components of the immature internodes was in general not significant. Sucrose partitioning coefficients in the mature internodes were 0.25, 0.21 and 0.20 in spring and 0.50, 0.32 and 0.21 in autumn (at C, W and H, respectively). Data that resulted from this study, which is isolated to temperature and cultivar NCo376 can be used in models of sugarcane that simulate leaf appearance and senescence, assimilate partitioning between leaf and stalk and assimilate partitioning between the stalk components namely sucrose, reducing sugars and fibre. / Thesis (M.Sc.)-University of KwaZulu-Natal, Pietermaritzburg, 2005.

Transverse cotyledonal cracking (TVC) was characterised at physiological, biochemical and molecular levels in three common bean (Phaseolus vulgaris L.) cultivars: Imbali, Tongaat and Tokai. The incidence of TVC was determined visually on ten-day old seedlings and was expressed as the number of cracks per plant. The effect of Ca++ on TVC incidence was examined by enhancing the calcium content of seed cotyledons using calcium salts in seed priming and coating. EDAX was used to quantify the cotyledonal calcium content. Activities of the pectinolytic enzymes polygalacturonase (PG) and pectin methylesterase (PME) were assayed at dry seed, VC, R4 and R6 phenophases of the bean plant, and zymogram electrophoresis was used to identify the two enzymes. The results showed that cultivars Imbali, Tongaat, and Tokai were susceptible resistant and intermediate, respectively, with respect to TVC incidence. Calcium uptake was higher in Tongaat cultivar (P= 0.05) compared with Imbali and Tokai, irrespective of calcium salt enhancement. Vigour was significantly reduced (P< 0.01) by both coating and priming. TVC significantly lowered yield (P= 0.05) in the susceptible Imbali cultivar. Zymogram analysis identified lytic bands at ~45kDa (PG gel) and ~30kDa (PME gel). The activity profile of PME was similar for all cultivars. However, PG activity of susceptible Imbali was high in dry seeds and at the R4 and R6 stages of plant development, whereas the more resistant cultivars displayed high activity at the VC stage only. It is concluded that high PG activity at R4 stage is a more reliable determinant of green bean propensity to cotyledonal cracking. / Thesis (M.Sc.)-University of KwaZulu-Natal, Pietermaritzburg, 2005.

Soil mineral N and soil water content at planting, biomass accumulation, yield and grain quality parameters (hectolitermass and protein percentage) were measured on an unfertilized and recommended-N-application treatment during two consecutive growing seasons (1997-1998). The trials were planted in a fallow-wheat-wheat cropping system at three representative localities in the summer rainfall region of South Africa. High levels of available soil water and mineral N were measured following the fallow period preceding the start of the trials in 1997. For example, soil water content was 81.7%, 69.6%, and 78.2% of DUL at Bethlehem, Kroonstad and Petrusburg respectively. Although comparable total soil profile water contents to 1997 were measured in 1998 at all three sites, the cultivation zone (0-400 mm) had a substantially lower soil water content. This was due to erratic rainfall distribution during the fallow period, which prevented effective soil cultivation management, subsequent soil water conservation and residue decomposition. Undecomposed residue in the cultivation layer at planting appeared to affect availability of soil mineral N to the growing crop. At planting in 1998, undecomposed crop residue amounted to 53.6% at Bethlehem, 32.5% at Kroonstad and 46.9% at Petrusburg of that added at harvest in 1997. Soil mineral N was lower at planting in 1998 compared to 1997 due to decomposing residue (C:N ratio of above 73) in the cultivation zone immobilizing soil mineral N. This reduced initial growth, N accumulation, yield, and grain protein percentage without additional fertilizer N. Distribution of soil mineral N showed notable amounts in the 600-1200 mm soil layers, with limited changes over the trial period. This was linked to low root exploration of these soil layers (10-15% of total root distribution). The ratios of soil mineral NH(4+):N0(3)- for the different soil layers indicated similar values over the trial period. Climatic data for the localities indicated differences in the amount and distribution of rainfall and temperatures during the study period, which influenced crop development, yield and grain protein percentage. At Bethlehem above average in-season rainfall was measured during 1997, at Kroonstad average rainfall and at Petrusburg below average in-season rainfall. Response to applied N at the localities varied in magnitude during 1997. Nitrogen application significantly increased N concentrations of plant components, N uptake, yield and grain protein percentage, although values for all these parameters were lower in 1998 than in 1997. Indeed higher yields were produced in 1997 (mean=1.838 t ha(-1)) compared to 1998 (mean=0.980 t ha(-1)). A significant yield response to applied N was measured at the two higher yielding localities in both cropping years, but there was no significant response at the lower yielding locality. The limiting factors appeared to be the availability of soil water and residual soil mineral N. From the calculated response functions, the variables soil water content at planting, soil mineral N content at planting, in-season rainfall, and added fertilizer N explained the bulk of the variations in grain protein percentage, plant N uptake, and yields. It was concluded that the present fertilizer N recommendation system for dryland wheat production, which is based on fertilizer response curves for specific yield potentials, should be augmented by using initial soil mineral N and water contents in the profile measured prior to planting. / Thesis (M.Sc.Agric.)-University of Natal, Pietermaritzburg, 2002.

Flooding cycle in wetland rice (Oryza sativa L.) production systems is often subject to seasonal and cultural variations which may affect the availability and uptake of nitrogen in different ways. These factors may more or less influence the physiological and growth responses of the plant. In an effort to improve productivity in rice cropping systems, two controlled environment studies and a field trial were conducted to evaluate the growth and yield responses of rice to different flooding regimes and nitrogen fertilizer management strategies. In the first glasshouse trial, an upland cultivar (GM-1) was used to study the effects of four flooding regimes and three nitrogen application rates on the tillering, yield components and grain yield of rice. The field study determined the applicability of the results of the glasshouse trial to out-door environmental conditions, with the aim of gaining further insight into the impact of nitrogen application strategy on tiller and grain qualities. Two wetland cultivars (FKR-19 and N-19) and GM-1 were used to evaluate the effects of two flooding regimes and two nitrogen topdressing patterns. The second glasshouse trial determined the effect of hydro-priming on the establishment of direct seeded rice, and the effect of flooding on aerenchyma formation in rice roots. Results of the studies showed that flooding with standing water of 5 cm above the soil surface, irrespective of when it occurred, and nitrogen application increased the number of tillers and panicles, above ground dry matter, nitrogen uptake and grain yield of rice. However, late flooding and high nitrogen application rate of 220 kg ha-1 were found to encourage the production of late tillers, thereby reducing the efficiency of nitrogen use for grain production. Nitrogen application in three split doses tended to increase plant nitrogen content at heading; it slightly increased the protein content of the grains at maturity, but reduced the amylose content of the starch granules. Nitrogen application in two split doses led to increased grain yield in non-flooded plants, while the three-split treatment increased nitrogen uptake and grain yield in the flooded plants. Flooding significantly increased aerenchyma formation in the cortical tissues of rice roots, particularly at 50 mm behind the root tips. Hydro-priming seeds for 48 h improved plant establishment by shortening the germination and emergence times, and increasing the height and dry matter accumulation of seedlings, thereby ameliorating the susceptibility of rice to flooding stress. Overall, the thesis affirmed that controlled flooding is beneficial to rice production since it enhanced the growth and yield of the plant. It further revealed that early flooding and appropriate timing of moderate nitrogen application can ensure the conservation of water and nitrogen resources, including the quality of the environment, with no significant consequence for yield and productivity of the crop. / Thesis (M.Sc.Agric.)-University of KwaZulu-Natal, Pietermaritzburg, 2010.

Crop rotation is not commonly practised in the sugarcane industry in South Africa. It has, however, proven to be beneficial to other crops in South Africa. The objective of this study was to determine the impact of soybean-sugarcane crop rotation on selected physiological and phenological indicators of sugarcane performance and its subsequent effect on cane and estimated recoverable crystal (ERC) yields. A field trial was conducted at Mount Edgecombe, where soybean cultivar A5409RG and sugarcane cultivar NCo376 were planted under drip irrigation with different management practices. After the soybean crop, the following sugarcane crop was planted and fertilized with different levels of nitrogen (N) fertilizer (50% and 100% of the recommended N rate). The effects on sugarcane growth were recorded by taking into consideration date of emergence, plant height, tiller population, leaf N, plant performance index and chlorophyll content. Sugarcane yield and quality at harvest were also evaluated. Tiller population in all crop rotation treatments at Mount Edgecombe weresignificantly (P<0.05) higher than the monocrop treatment. There was a trend of increased leaf N in all of the cane-after-soya (crop rotation) crops compared to the cane-after-cane (monocrop) treatment, although this was not significant. A similar pattern was obtained with respect to the chlorophyll content and plant performance index. Sugarcane yields at Mount Edgecombe did not differ significantly between monocrop and crop rotation treatments. Crop rotation with soybean is beneficial for cane production, but its long term impact on soil quality and farm economy requires further investigation. / M.Sc.Agric. University of KwaZulu-Natal, Pietermaritzburg 2013.