Atualmente, aplicações de nanopartículas de magnetita (NPs-Fe3O4) têm sido comumente reportadas em inúmeros trabalhos descritos na literatura. Catálise, ferrofluidos e dispositivos de armazenamento de dados são algumas delas. Além disso, aplicações biomédicas têm sido demonstradas. Para esse último, têm-se os exemplos de magneto-hipertermia, liberação controlada de fármacos, agente de contraste em imagens de ressonância magnética e o controle de reações bioeletrocatalíticas envolvendo enzimas redox. Nesta tese, NPs-Fe3O4 foram aplicadas em duas vertentes inéditas. Dessa forma, tendo em vista uma melhor compreensão, a sua escrita foi dividida em dois capítulos, nos quais abordam separadamente cada uma dessas vertentes. O primeiro capítulo descreve a obtenção, modificação e funcionalização de NPs-Fe3O4 a afim de usá-las como uma plataforma para a imobilização do citocromo c (Cyt c); uma proteína redox de comportamento modelo dotada de um grupo prostético heme em sua estrutura terciária. Em seguida, após um efetivo processo de imobilização do Cyt c sobre as NPs-Fe3O4 com superfície modificada, o uso de um campo magnético externo possibilitou a deposição do mesmo na interface eletródica, estabelecendo a reação de transferência direta de elétrons entre o grupo heme e a superfície metálica do eletrodo de trabalho. Além disso, por meio da permuta entre os estados comutáveis switch on e switch off, obteve-se o controle magnético comutável da reação de transferência direta de elétrons do Cyt c quando imobilizado na superfície das NPs-Fe3O4 com superfície modificada. Já para o segundo capítulo, NPs-Fe3O4 foram utilizadas como adesivo magnético a fim de capturar nanoestruturas metálicas hollow (nanocages bimetálicos de Au/Ag) dispersas em suspensão aquosa. Dessa forma, por meio da influência de um campo magnético constante, os aglomerados formados entre esses dois nanomateriais foram depositados sobre uma máscara litográfica, levando a formação de padrões de litografia magnética dispostos sobre a superfície de um substrato de ITO (vidro recoberto com óxido de estanho dopado com índio). Imagens de microscopia eletrônica de varredura (MEV) comprovaram que a metodologia utilizada para o preparo dos padrões litográficos foi eficaz, apresentando um alto rendimento na obtenção dos mesmos. Além disso, realizou-se com sucesso o mapeamento químico de infravermelho dos padrões litográficos dispostos sobre o ITO. Para isso, empregou-se como alvo os modos vibracionais do polímero polivinilpirrolidona (PVP) utilizado na funcionalização dos nanocages bimetálicos de Au/Ag. Por fim, acredita-se que os padrões litográficos arranjados em macroescala, juntamente com os aglomerados de nanocages bimetálicos alinhados na forma de microfios, possuem potencial aplicação em estudos de espectroscopia de absorção no infravermelho intensificado por superfície (SEIRA). / Currently, applications of magnetite nanoparticles (Fe3O4-NPs) have been commonly reported in many studies in the literature. Catalysis, ferrofluids and data storage devices are some of them. Moreover, biomedical applications have been demonstrated. For the latter, there are the following examples, such as magneto-hyperthermia, controlled release of drugs and the control of bioelectrocatalysis of the enzymatic reactions. In this thesis, Fe3O4-NPs were used in two new applications. Therefore, towards a better understanding its writing was divided into two chapters, which each one of them reports separately these two applications. The first chapter describes the synthesis, modification and functionalization of Fe3O4-NPs in order to use them as a platform for the immobilization of cytochrome c (Cyt c); model redox protein which possess a heme prosthetic group in its tertiary structure. Then, after an effective immobilization of Cyt c on surface-modified Fe3O4-NPs, the use of an external magnetic field permitted the deposition of this redox protein on the electrode interface, establishing the reaction of direct electron transfer between heme prosthetic group and the metallic surface of the working electrode. Furthermore, by the exchange between ON and OFF switch modes was obtained the magnetic control of the direct electron transfer of Cyt c when immobilized on the surface-modified Fe3O4-NPs. For the second chapter, Fe3O4-NPs were used as magnetic adhesive to capture hollow metallic nanostructures (Au-Ag bimetallic nanocages) dispersed in aqueous suspension. Thus, by use of a constant magnetic field, the agglomerates formed between these two nanomaterials were deposited on a lithographic mask, leading to formation of magnetolithograph patterns on the surface of ITO substrate (glass coated with oxide tin-doped indium). Scanning electron microscopy images (SEM) showed that the methodology used for the high-yield preparation of lithographicpatterns was effective. Furthermore, the FTIR chemical mapping of the lithographic patterns arranged on the ITO\'s surface was successfully performed. For this, the CH2 and C-N, C=O vibrational modes of the polyvinylpyrrolidone polymer (PVP) used for the functionalization of Au-Ag bimetallic nanocages were employed as target. Finally, we believed that magnetolithograph patterns arranged in microscale on the ITO surface, and also the clusters of the bimetallic nanocages aligned as micro-wires show potential application in surface-enhanced infrared absorption (SEIRA).

La Tomographie Optique Diffuse (TOD) est désormais une modalité d’imagerie médicale fonctionnelle reconnue. L’une des applications les plus répandues de cette technique est celle de l’imagerie fonctionnelle cérébrale chez l’Homme. En effet, cette technique présente de nombreux avantages, notamment grâce à la richesse des contrastes optiques accessibles. Néanmoins, certains verrous subsistent et freinent le développement de son utilisation, spécialement pour des applications chez l’Homme adulte en clinique ou dans des conditions particulières comme lors du suivi de l’activité sportive. En effet, le signal optique mesuré contient des informations venant de différentes profondeurs de la tête, et donc de différents types de tissus comme la peau ou le cerveau. Or, la réponse d’intérêt étant celle du cerveau, la réponse de la peau peut dégrader l’information recherchée. Dans ce contexte, ces travaux portent sur le développement d’un nouvel instrument de TOD permettant d’acquérir les dimensions spatiale, spectrale et de temps de vol du photon de façon simultanée, et ce à haute fréquence d’acquisition. Au cours de cette thèse, l’instrument a été développé et caractérisé sur fantôme optique. Ensuite, il a été validé in-vivo chez l’Homme adulte, notamment en détectant l’activité du cortex préfrontal en réponse à une tâche de calcul simple. Les informations multidimensionnelles acquises par notre système ont permis d’améliorer la séparation des contributions des différents tissus (Peau/Cerveau). Elles ont également permis de différencier la signature de la réponse physiologique de ces tissus, notamment en permettant de détecter les variations de concentration en Cytochrome-c-oxydase. Parallèlement à ce développement instrumental, des simulations Monte-Carlo de la propagation de la lumière dans un modèle anatomique de tête ont été effectuées. Ces simulations ont permis de mieux comprendre la propagation de la lumière dans les tissus en fonction de la longueur d’onde et de valider la pertinence de cette approche multidimensionnelle. Les perspectives de ces travaux de thèse se dirigent vers l’utilisation de cet instrument pour le suivi de la réponse du cerveau chez l’Homme adulte lors de différentes sollicitations comme des stimulations de TDCS, ou en réponse à une activité sportive. / The Diffuse Optical Tomography (DOT) is now a relevant tool for the functional medical imaging. One of the most widespread application of this technic is the imaging of the human brain function. Indeed, this technic has numerous advantages, especially the richness of the optical contrast accessible. Nevertheless, some drawbacks are curbing the use of the technic, especially for applications on adults in clinics or in particular environment like in the monitoring of sports activity. Indeed, the measured signal contains information coming from different depths of the head, so it contains different tissues types like skin and brain. Yet, the response of interest is the one of the brain, and the one of the skin is blurring it. In this context, this work is about the development of a new instrument of DOT capable of acquiring spatial and spectral information, as well as the arrival time of photons simultaneously and at a high acquisition speed. During the PhD thesis the instrument has been developed and characterised on optical phantoms. Then, it has been validated in-vivo on adults, especially by detecting the cortical activation of the prefrontal cortex, in response to a simple calculation task. Multidimensional information acquired by our system allowed us to better distinguish between superficial and deep layers. It also allowed us to distinguish between the physiological signature of those tissues, and especially to detect the variations of concentration in Cytochrom-c-oxydase. Concurrently to this experimental work, Monte-Carlo simulation of light propagation in a model off a human head has been done. Those simulations allowed us to better understand the light propagation in tissues as function as their wavelength, and to validate the relevance of our multidimensional approach. Perspectives of this work is to use the developed instrument to monitor the brain’s response of the Human adult to several solicitations like tDCS stimulation, or sports activity.

The effect of a free-living stage in host-parasite coevolution: a skink mite phylogenetic study in New Zealand. During the last decade, phylogenetic trees have even been used to compare ecologically related taxa such as parasites and their hosts, and are used to determine their level of coevolution or reciprocal adaptation in time. Diverse coevolutionary events have been detected for this ecological association, where generally the parasite has been regarded as one that feeds exclusively on the host and is likely to cospeciate with it. A different coevolutionary pattern might occur when the parasite has a free-living stage in its life cycle, in which the parasite may have the opportunity to abandon its host and successfully colonise a new species (host-switching) making cospeciation less likely. Many New Zealand skinks are infested with a parasitic mite, Odontacarus sp. (Prostigmata: Leeuwenhoekiidae), which becomes free-living as an adult. The genetic variation of these mites found on four hosts was analyzed for host- parasite coevolutionary events. The hosts were the McCann’s skink and the common skink in coastal Birdling Flat, Canterbury, plus these species and the Grand and Otago skinks in Macraes Flat, Central Otago, South Island, New Zealand. The genetic variation of fast evolving nuclear Internal Transcribed Spacers 2 and mitochondrial Cytochrome c Oxidase I in Odontacarus mites found on these hosts was determined by PCR and DNA sequencing and phylogenetic trees were built using the computer programs PAUP*4 and MrBayes 3. The results show that mite haplotypes only had a significant geographical division and no host-related differences. In Birdling Flat, the COI haplotypes were represented in two groups that infested both regional hosts and had 5.7 % divergence. The same individual mites belonged to a single ITS 2 haplotype, thus indicating a historical geographical division between two populations that now interbreed successfully. The Macraes Flat mites were divided into two COI haplotypes with 2.4% divergence and internal nodes, which showed greater genetic variability than the Birdling Flat populations. The Macraes Flat mites formed two ITS 2 haplotypes with 6% divergence. This greater geographical structure of the Otago mites is probably due to the older age of the mainland area compared to the recently exposed coastal locality of Birdling Flat. The COI haplotypes from the two different regions had a mean distance of 15.5%, with an earlier divergence time than that known for the hosts. For both genes, the haplotypes from different regions had 100% bootstrap support and the parasite showed no host specificity. Mites of the different COI and ITS haplotypes were found on most of the host species that were sampled in Canterbury and Otago. The results of this study suggest that a free-living stage in a parasite’s life cycle can favour coevolutionary events such as inertia (failure to speciate) and host-switching, probably as a result of resource-tracking of the parasite. NB: Electronic files contained on CD to accompany print copy are not included with this version of the thesis.

In this work, an electrochemical method based on a cyt c biosensor has been developed, for the detection of selected arsenic and cyanide compounds. Boron Doped Diamond (BDD) electrode was used as a transducer, onto which cyt c was immobilised and used for direct determination of Prussian blue, potassium cyanide and arsenic trioxide by inhibition mechanism. The sensitivity as calculated from cyclic voltammetry (CV) and square wave voltammetry (SWV), for each analyte in phosphate buffer (pH= 7) was found to be (1.087- 4.488 ×10-9 M) and the detection limits ranging from 0.0043- 9.1 μM. These values represent a big improvement over the current Environmental Protection Agency (EPA) and World Health Organisation (WHO) guidelines.

No description available.

This thesis investigates the molecular evolutionary and macroevolutionary consequences of flight loss in insects. Chapter 2 tests the hypothesis that flightless groups have smaller effective population sizes than related flighted groups, expected to result in a consistent pattern of increased non-synonymous to synonymous ratios in flightless lineages due to the greater effect of genetic drift in smaller populations. Chapter 3 tests the hypothesis that reduced dispersal and species-level traits such as range size associated with flightlessness increase extinction rates, which over the long term will counteract increased speciation rates in flightless lineages, leading to lower net diversification. The wide-spread loss of flight in insects has led to increased molecular evolutionary rates and is associated with decreased long-term net diversification. I demonstrate that the fundamental trait of dispersal ability has shaped two forms of diversity—molecular and species—in the largest group of animals, and that microevolutionary and macroevolutionary patterns do not necessarily mirror each other. / Generously funded by NSERC with a Canada Graduate Scholarship and the Government of Ontario with an Ontario Graduate Scholarship to T. Fatima Mitterboeck; NSERC with a Discovery Grant to Dr. Sarah J. Adamowicz

In this work, an electrochemical method based on a cyt c biosensor has been developed, for the detection of selected arsenic and cyanide compounds. Boron Doped Diamond (BDD) electrode was used as a transducer, onto which cyt c was immobilised and used for direct determination of Prussian blue, potassium cyanide and arsenic trioxide by inhibition mechanism. The sensitivity as calculated from cyclic voltammetry (CV) and square wave voltammetry (SWV), for each analyte in phosphate buffer (pH= 7) was found to be (1.087- 4.488 ×10-9 M) and the detection limits ranging from 0.0043- 9.1 μM. These values represent a big improvement over the current Environmental Protection Agency (EPA) and World Health Organisation (WHO) guidelines.

Magister Scientiae - MSc / In this work, an electrochemical method based on a cyt c biosensor has been developed, for the detection of selected arsenic and cyanide compounds. Boron Doped Diamond (BDD) electrode was used as a transducer, onto which cyt c was immobilised and used for direct determination of Prussian blue, potassium cyanide and arsenic trioxide by inhibition mechanism. The sensitivity as calculated from cyclic voltammetry (CV) and square wave voltammetry (SWV), for each analyte in phosphate buffer (pH= 7) was found to be (1.087- 4.488 ×10-9 M) and the detection limits ranging from 0.0043- 9.1 μM. These values represent a big improvement over the current Environmental Protection Agency (EPA) and World Health Organisation (WHO) guidelines. / South Africa

Atualmente, aplicações de nanopartículas de magnetita (NPs-Fe3O4) têm sido comumente reportadas em inúmeros trabalhos descritos na literatura. Catálise, ferrofluidos e dispositivos de armazenamento de dados são algumas delas. Além disso, aplicações biomédicas têm sido demonstradas. Para esse último, têm-se os exemplos de magneto-hipertermia, liberação controlada de fármacos, agente de contraste em imagens de ressonância magnética e o controle de reações bioeletrocatalíticas envolvendo enzimas redox. Nesta tese, NPs-Fe3O4 foram aplicadas em duas vertentes inéditas. Dessa forma, tendo em vista uma melhor compreensão, a sua escrita foi dividida em dois capítulos, nos quais abordam separadamente cada uma dessas vertentes. O primeiro capítulo descreve a obtenção, modificação e funcionalização de NPs-Fe3O4 a afim de usá-las como uma plataforma para a imobilização do citocromo c (Cyt c); uma proteína redox de comportamento modelo dotada de um grupo prostético heme em sua estrutura terciária. Em seguida, após um efetivo processo de imobilização do Cyt c sobre as NPs-Fe3O4 com superfície modificada, o uso de um campo magnético externo possibilitou a deposição do mesmo na interface eletródica, estabelecendo a reação de transferência direta de elétrons entre o grupo heme e a superfície metálica do eletrodo de trabalho. Além disso, por meio da permuta entre os estados comutáveis switch on e switch off, obteve-se o controle magnético comutável da reação de transferência direta de elétrons do Cyt c quando imobilizado na superfície das NPs-Fe3O4 com superfície modificada. Já para o segundo capítulo, NPs-Fe3O4 foram utilizadas como adesivo magnético a fim de capturar nanoestruturas metálicas hollow (nanocages bimetálicos de Au/Ag) dispersas em suspensão aquosa. Dessa forma, por meio da influência de um campo magnético constante, os aglomerados formados entre esses dois nanomateriais foram depositados sobre uma máscara litográfica, levando a formação de padrões de litografia magnética dispostos sobre a superfície de um substrato de ITO (vidro recoberto com óxido de estanho dopado com índio). Imagens de microscopia eletrônica de varredura (MEV) comprovaram que a metodologia utilizada para o preparo dos padrões litográficos foi eficaz, apresentando um alto rendimento na obtenção dos mesmos. Além disso, realizou-se com sucesso o mapeamento químico de infravermelho dos padrões litográficos dispostos sobre o ITO. Para isso, empregou-se como alvo os modos vibracionais do polímero polivinilpirrolidona (PVP) utilizado na funcionalização dos nanocages bimetálicos de Au/Ag. Por fim, acredita-se que os padrões litográficos arranjados em macroescala, juntamente com os aglomerados de nanocages bimetálicos alinhados na forma de microfios, possuem potencial aplicação em estudos de espectroscopia de absorção no infravermelho intensificado por superfície (SEIRA). / Currently, applications of magnetite nanoparticles (Fe3O4-NPs) have been commonly reported in many studies in the literature. Catalysis, ferrofluids and data storage devices are some of them. Moreover, biomedical applications have been demonstrated. For the latter, there are the following examples, such as magneto-hyperthermia, controlled release of drugs and the control of bioelectrocatalysis of the enzymatic reactions. In this thesis, Fe3O4-NPs were used in two new applications. Therefore, towards a better understanding its writing was divided into two chapters, which each one of them reports separately these two applications. The first chapter describes the synthesis, modification and functionalization of Fe3O4-NPs in order to use them as a platform for the immobilization of cytochrome c (Cyt c); model redox protein which possess a heme prosthetic group in its tertiary structure. Then, after an effective immobilization of Cyt c on surface-modified Fe3O4-NPs, the use of an external magnetic field permitted the deposition of this redox protein on the electrode interface, establishing the reaction of direct electron transfer between heme prosthetic group and the metallic surface of the working electrode. Furthermore, by the exchange between ON and OFF switch modes was obtained the magnetic control of the direct electron transfer of Cyt c when immobilized on the surface-modified Fe3O4-NPs. For the second chapter, Fe3O4-NPs were used as magnetic adhesive to capture hollow metallic nanostructures (Au-Ag bimetallic nanocages) dispersed in aqueous suspension. Thus, by use of a constant magnetic field, the agglomerates formed between these two nanomaterials were deposited on a lithographic mask, leading to formation of magnetolithograph patterns on the surface of ITO substrate (glass coated with oxide tin-doped indium). Scanning electron microscopy images (SEM) showed that the methodology used for the high-yield preparation of lithographicpatterns was effective. Furthermore, the FTIR chemical mapping of the lithographic patterns arranged on the ITO\'s surface was successfully performed. For this, the CH2 and C-N, C=O vibrational modes of the polyvinylpyrrolidone polymer (PVP) used for the functionalization of Au-Ag bimetallic nanocages were employed as target. Finally, we believed that magnetolithograph patterns arranged in microscale on the ITO surface, and also the clusters of the bimetallic nanocages aligned as micro-wires show potential application in surface-enhanced infrared absorption (SEIRA).

The two related putative cytochrome c oxidase (COX) assembly factors HCC1 and HCC2 from Arabidopsis thaliana are Homologs of the yeast Copper Chaperones Sco1p and Sco2p. The hcc1 null mutation was previously shown to be embryo lethal while the disruption of the HCC2 gene function had no obvious effect on plant development, but increased the expression of stress-responsive genes. Both HCC1 and HCC2 contain a thioredoxin domain, but only HCC1 carries a Cu-binding motif also found in Sco1p and Sco2p. In order to investigate the physiological implications suggested by this difference, various hcc1 and hcc2 mutants were generated and analyzed. The lethality of the hcc1 knockout mutation was rescued by complementation with the HCC1 gene under the control of the embryo-specific promoter ABSCISIC ACID INSENSITIVE 3. However, the complemented seedlings did not grow into mature plants, underscoring the general importance of HCC1 for plant growth. The HCC2 homolog was shown to localize to mitochondria like HCC1, yet the function of HCC2 is evidently different, because two hcc2 knockout lines developed normally and exhibited only mild growth suppression compared with the wild type (WT). However, hcc2 knockouts were more sensitive to UV-B treatment than the WT. Complementation of the hcc2 knockout with HCC2 rescued the UV-B-sensitive phenotype. In agreement with this, exposure of wild-type plants to UV-B led to an increase of HCC2 transcripts. In order to corroborate a function of HCC1 and HCC2 in COX biogenesis, COX activity of hcc1 and hcc2 mutants was compared. While the loss of HCC2 function had no significant effect on COX activity, the disruption of one HCC1 gene copy was enough to suppress respiration by more than half compared with the WT. Therefore, we conclude that HCC1 is essential for COX function, most likely by delivering Cu to the catalytic center. HCC2, on the other hand, seems to be involved directly or indirectly in UV-B-stress responses.