Effluents of industrial wastewaters from oil refineries, paper mills, dyes, ceramic factories, resins, textiles and plastic contain high concentrations of aromatic compounds, which are toxic to organisms. Degradation of these compounds to tolerant limits before releasing them into the environment is an urgent requirement. Candida tropicalis yeast is an important representative of eucaryotic microorganisms that are able to utilize phenol. During the first phase of phenol biodegradation, cytoplasmatic NADPH-dependent phenol hydroxylase of C. tropicatis oxidizes phenol to catechol. Catechol is in the second phase of biodegradative process oxidized to cis,cis-muconic acid by the reaction catalyzed with catechol-1,2-dioxygenase. In this diploma thesis we investigated the effect of the heavy metal ions on NADPH-dependent phenol hydroxylase and catechol-1,2-dioxygenase of C. tropicalis. Phenol hydroxylase was inhibited by Cu2+ and Pb2+ ions. Catechol dioxygenase was inhibited by all substances containing heavy metal ions (Fe2+ , Mn2+ , Cd2+ , Cu2+ and Pb2+ ), which were tested in this work. The most effective inhibition was produced by Pb2+ followed by Mn2+ , Cd2+ Fe2+ and Cu2+ ions. The higher sensitivity of catechol-1,2-dioxygenase to heavy metal ions might follow from the presence of histidine residue...

Submitted by Nadir Basilio (nadirsb@uninove.br) on 2016-05-17T21:35:19Z No. of bitstreams: 1 Mario Cezar Saffi Junior.pdf: 600477 bytes, checksum: 389162272a6d7d9eb1d1a097d21a6d9a (MD5) / Made available in DSpace on 2016-05-17T21:35:19Z (GMT). No. of bitstreams: 1 Mario Cezar Saffi Junior.pdf: 600477 bytes, checksum: 389162272a6d7d9eb1d1a097d21a6d9a (MD5) Previous issue date: 2015-01-22 / The cervical cancer is the first cancer of the female genital tract in Brazil and HPV is essential factor for carcinogenesis. The Brazilian program tracking proposes conventional cervical cytology as the primary method to detect cervical cancer, despite its low sensitivity. Risk factors associated with the spread of HPV are despised and not rely on a biomolecular tool that can increase the program offered by the Ministry of Health. The aim of this study was to determine whether the risk factors for cervical cancer may contribute to the conventional cervical cytology to increase diagnostic sensitivity and assess whether the mRNA indoleamine 2,3 dioxygenase (IDO) and mRNA CDKN2A / p16 may increase the diagnostic yield of this neoplasm. The logistic regression analysis was based on clinical variables (risk factors), cytological and biomolecular to seek an association with pathological results. The proportion of explained variance (PVE) for each variable studied was calculated by the formula omega, whereas the sensitivity, specificity, positive predictive value and negative predictive value were calculated by the formulas of Galen and Gambino. We conclude that oral contraceptive showed greater predictive power of high-grade lesions compared to other risk factors, and that both the IDO mRNA as CDKN2A mRNA / p16 may help screening of cervical cancer, either when used alone, or in conjunction with conventional cervical cytology, increasing their sensitivity and maintaining a considerable specificity. / O câncer de colo uterino apresenta-se como a principal neoplasia do trato genital feminino no Brasil, sendo o HPV fator essencial para a carcinogênese. O programa brasileiro de rastreamento propõe a citologia oncológica cervical convencional como principal método para detectar o câncer do colo uterino, apesar da sua baixa sensibilidade. Os fatores de risco associados ao contágio do HPV são desprezados e não contamos com uma ferramenta biomolecular que possa incrementar o programa oferecido pelo Ministério da Saúde. O objetivo desse trabalho foi verificar se os fatores de risco para o câncer de colo uterino podem contribuir com a citologia oncológica cervical convencional para aumentar a sensibilidade diagnóstica e avaliar se o RNAm Indoleamine 2,3 dioxigenase (IDO) e o RNAm CDKN2A/p16 podem incrementar a capacidade diagnóstica dessa neoplasia. A análise de regressão logística foi baseada nas variáveis clínicas (fatores de risco), citológicas e biomoleculares a fim de buscar uma associação com o resultado anatomopatológico. A proporção de variação explicada (PVE) por cada uma das variáveis estudada foi calculada pela fórmula ômega, enquanto que a sensibilidade, especificidade, valor preditivo positivo e o valor preditivo negativo foram calculados pelas fórmulas de Galen e Gambino. Concluímos que o uso do contraceptivo oral mostrou um maior poder de predição de lesões de alto grau em relação aos demais fatores de risco, e que tanto a RNAm IDO quanto o RNAm CDKN2A/p16 poderem auxiliar no rastreamento do câncer de colo uterino, seja quando usados de forma isolada, seja conjuntamente com a citologia cervical convencional, elevando sua sensibilidade e mantendo uma considerável especificidade.

Il existe plusieurs défis au développement d’une thérapie visant à stimuler l’immunité cellulaire. Dans la prévention contre certains virus et en immunothérapie du cancer, l’induction de lymphocytes T spécifiques est cependant primordiale. Dans la première partie de l’étude, nous avons porté notre attention sur la compréhension de la présentation croisée par le complexe majeur d’histocompatibilité de classe I (CMH I) médiée par des particules pseudo-virales (VLP) composées de la protéine de surface de potexvirus à laquelle nous avons ajouté un épitope de la protéine M1 du virus de l’influenza ou un épitope de la protéine gp100 du mélanome. Cette VLP se caractérise par sa capacité à stimuler, sans l’aide d’adjuvant, le système immunitaire et de présenter de façon croisée l’épitope inséré dans sa protéine de surface et ce, indépendamment de l’activité du protéasome. Nous avons, tout d’abord, comparé les propriétés de présentation antigénique croisée des VLP formées du virus de la mosaïque de la malva (MaMV) à celles des VLP du virus de la mosaïque de la papaye (PapMV). Les résultats confirment que ces propriétés sont partagées par plusieurs membres de la famille des potexvirus malgré des divergences de séquences (Hanafi et al. Vaccine 2010). De plus, nous avons procédé à des expériences pour préciser le mécanisme menant à la présentation de l’épitope inséré dans les VLP de PapMV. Les résultats nous confirment une voie vacuolaire dépendante de l’activité de la cathepsine S et de l’acidification des lysosomes pour l’apprêtement antigénique. L’induction de l’autophagie par les VLP semble également nécessaire à la présentation croisée par les VLP de PapMV. Nous avons donc établi un nouveau mécanisme de présentation croisée vacuolaire dépendant de l’autophagie (Hanafi et al. soumis Autophagy). En second lieu, en immunothérapie du cancer, il est aussi important de contrôler les mécanismes d’évasion immunitaire mis en branle par la tumeur. Nous avons spécifiquement étudié l’enzyme immunosuppressive indoleamine 2,3-dioxygénase (IDO) (revue de la littérature dans les tumeurs humaines; Hanafi et al. Clin. Can. Res 2011) et son inhibition dans les cellules tumorales. Pour ce faire, nous avons tenté d’inhiber son expression par la fludarabine, agent chimiothérapeutique précédemment étudié pour son activité inhibitrice de l’activation de STAT1 (signal transducers and activators of transcription 1). Étonnamment, nos résultats ont montré l’inhibition d’IDO dans les cellules tumorales par la fludarabine, indépendamment de l’inhibition de la phosphorylation de STAT1. Nous avons démontré que le mécanisme d’action dépendait plutôt de l’induction de la dégradation d’IDO par le protéasome (Hanafi et al. PlosOne 2014). Les travaux présentés dans cette thèse ont donc portés autant sur la compréhension d’une nouvelle plateforme de vaccination pouvant médier l’activation de lymphocytes T CD8+ cytotoxiques et sur le contrôle d’une immunosuppression établie par les cellules tumorales pour évader au système immunitaire. Ces deux grandes stratégies sont à considérer en immunothérapie du cancer et la combinaison avec d’autres thérapies déjà existantes pourra permettre une meilleure réponse clinique. / There are several challenges to the development of therapies aimed at stimulating cellular immunity. In viral infection prevention and in cancer immunotherapy, the induction of specific T lymphocytes is, however, of paramount importance. In the first part of this study, we focused our attention on understanding the major histocompatibility complex class I (MHC I) cross-presentation mediated by virus-like particles (VLP) composed of potexvirus coat protein, in which we had inserted an epitope from the M1 protein of the Influenza virus or an epitope from gp100, a tumour antigen of melanoma. This particular VLP is characterized by its ability to stimulate the immune system with no adjuvant and its cross-presentation of the inserted epitope independently of proteasome activity. First, we compared the antigenic cross-presentation properties of Malva mosaic virus (MaMV) VLPs to that of Papaya mosaic virus (PapMV) VLPs. The results confirm that cross-presentation mechanisms are shared among different members of the potexvirus family despite marked differences in their sequences (Hanafi et al. Vaccine 2010). Furthermore, we have conducted experiments to clarify the mechanism leading to the cross-presentation of the inserted epitope in PapMV VLPs. The results confirm a vacuolar pathway dependent on cathepsin S activity and on lysosomal acidification for antigen presentation. Autophagy induction by VLPs is also important to PapMV VLP antigen cross-presentation. We have herein described a new vacuolar MHC I cross-presentation pathway dependent on autophagy (Hanafi et al. in preparation). Secondly, in cancer immunotherapy, it is crucial to control immune evasion mechanisms that are initiated by the tumour. We have specifically studied the immunosuppressive enzyme indoleamine 2,3-dioxygenase (IDO) (human cancer literature review in Hanafi et al. Clin. Can. Res. 2011), and its inhibition in tumour cells. To this end, we inhibited its expression using fludarabine, a chemotherapeutic agent previously studied for its inhibitory effect on STAT1 (signal transducers and activators of transcription 1) phosphorylation. Surprisingly, our results demonstrate that IDO inhibition in cancer cells by fludarabine was independent of STAT1 phosphorylation. We showed that the mechanism of action was rather dependent on the induction of IDO degradation by the proteasome (Hanafi et al. PlosOne 2014). The work presented in this thesis provides a better understanding of how a new vaccine platform can mediate cytotoxic CD8+ T lymphocytes activation and the control of the problem of immunosuppression by tumour cells for the evading of the immune system. These two main strategies are to key for the consideration of cancer immunotherapy in combination with other existing therapies, as these should allow a better clinical response to cancer treatment.

Os tumores carcinoides típicos broncopulmonares (TCTB) são considerados neoplasias bem diferenciadas e as menos agressivas dentro do espectro dos tumores neuroendócrinos. Entretanto, metástases linfonodais e hematogênicas tem sido encontradas em número considerável de casos e não existem, até o momento, estudos relacionados aos mecanismos de escape imune tumoral em TCTB. Alguns trabalhos tem relacionado a expressão da enzima indoleamine 2,3-dioxigenase (IDO) em células neoplásicas como fator responsável pela aquisição de tolerância tumoral. Além disso, os níveis de infiltração linfocitária intratumoral parecem estar associados com prognóstico e sobrevida nesses tumores. O principal objetivo deste estudo foi determinar os níveis de expressão intratumorais da IDO e sua possível aplicação como marcador biológico de metástases em TCTB. Além disso, também foi estabelecido o padrão de infiltração linfocitária intratumoral e analisada sua provável correlação com os níveis de expressão da IDO. Portanto, realizou-se uma coorte retrospectiva multicêntrica no qual 64 pacientes submetidos à cirurgia de ressecção de TCTB entre 1981 e 2003 foram selecionados. O período de seguimento pós-operatório foi de 5 anos e a ocorrência de metástases linfonodais (hilar ou mediastinal) e hematogênicas foi avaliada através de tomografia computadorizada. Os níveis da expressão da IDO e de infiltração linfocitária intratumoral foram avaliados através de estudo imunohistoquímico. Os resultados obtidos mostraram que dos 64 pacientes selecionados, 17 (26.5%) apresentaram qualquer tipo de metátases durante o estudo: linfonodal, hematogênica ou ambas. A expressão da IDO foi encontrada em níveis diferentes de intensidade em mais de 80% das células dos TBCT. Entretanto, a análise univariada não mostrou nenhuma diferença significante na expressão da IDO entre grupos com e sem metástase (p=0,9 e p=0,3 pela análise semi-quantitativa e quantitativa, respectivamente). A quantificação dos linfócitos em todos os grupos estudados demonstrou predominância de linfócitos T CD8+, quando comparado aos linfócitos T CD4+(p< 0.01). Nenhuma diferença na infiltração intratumoral de linfócitos T CD8+ foi encontrada entre grupos com e sem metástase (p=0,98). Entretanto, a quantificação de linfócitos T CD4+ foi nula nos grupos com qualquer tipo de metástase (p=0,01), e nos casos com metástase linfonodal (p=0,02). Nenhuma correlação entre os níveis da expressão da IDO e da infiltração linfocitária intratumoral foi identificada nos grupos analisados (r= -0.2 e p=0,1 para ambos os grupos). Conclui-se que, a expressão intratumoral da IDO não apresenta correlação com a ocorrência de metástase nos TBCT. Apesar de nenhuma diferença ter sido identificada na infiltração intratumoral de linfócitos T CD8+ nos grupos com e sem metástase, a ausência de infiltração de linfócitos T CD4+ está associado à ocorrência do evento estudado. Estes linfócitos parecem conferir um efeito protetor evitando o escape tumoral / Typical bronchopulmonary carcinoid tumors (TBCT) are considered the less aggressive neoplasm within the spectrum of neuroendocrine tumors. However, regional nodes and haematogenic metastasis occur in a considerable rate and no data regarding immune escape mechanisms in these tumors are available. Some studies have implicated indoleamine 2,3 dioxygenase (IDO) expression in malignant cells as the responsible for tumor tolerance. Also, levels of tumor infiltrating lymphocytes (TILs) seem to be related with prognosis and survival. Our aim in this study was to determine intratumoral IDO expression levels and the value of this variable as a predictive marker of TBCT metastasis. Thus, TILs pattern was determined and correlation with intratumoral IDO expression analyzed. For this purpose, a multicenter retrospective cohort study was performed and 64 patients operated on for TBCT between 1981 and 2003 were enrolled. Follow-up period was 5 years and regional or haematogenic metastasis was assessed by computerized tomography (CT) scan. Levels of IDO expression and TILs were assessed by immunohistochemical study. The results obtained showed that of all 64 patients, 17 (26,5%) presented with any metastasis during the study: regional nodes, haematogenic or both. IDO expression was found in different intensity levels in over 80% of TBCT cells. However, univariate analysis showed no significant difference in IDO expression between groups with and without metastasis (p=0,9 and p=0,3 for semi-quantitative and quantitative analysis respectively). TILs quantification in all studied groups demonstrated predominance of CD8+ TILs when compared to CD4+ TILs (p<0,01). No difference in CD8+ TILs was found between groups with and without metastasis (p=0,98). However CD4+ TILs quantification was null in the groups with any metastasis (p=0,01), and regional nodes metastasis (p=0,02). No correlation between IDO expression levels and TILs was identified in all analyzed groups(r= -0,2 and p=0,1 for both groups). In conclusion, these data shows that intratumoral IDO expression do not correlate with TBCT metastasis. Even though no difference in CD8+ TILs between groups with and without metastasis was found, absence of CD4+ TILs is associated with the studied event. These cells seem to confer a protective effect against tumoral immune escape

L'hormone thyroïdienne (T3) contrôle à la fois les processus développementaux et physiologiques. Elle agit via les récepteurs de l'hormone thyroïdienne (TR), membres de la famille des récepteurs hormonaux nucléaires. Ils agissent comme des facteurs de transcription dépendants du ligand. La méthylation de l'ADN en position 5 de la cytosine est une modification épigénétique importante qui affecte la structure de la chromatine et l'expression des gènes. Des études récentes ont établi un rôle important des protéines de la famille TET (Ten-eleven translocation) dans la régulation de la dynamique de la méthylation de l'ADN. Elles convertissent la 5-méthyl-cytosine (5mC) en 5-hydroxyméthylcytosine (5hmC). D’autres études ont démontré que les protéines TET (TET1, TET2 et TET3) possèdent des fonctions de régulation transcriptionnelle dépendantes et indépendantes de leur activité catalytique. Notre étude a identifié TET3 comme une nouvelle protéine interagissant avec TR. Le domaine AF2 de TR ainsi que le domaine catalytique et le domaine CXXC de TET3 sont responsables de cette interaction. Celle-ci permet la stabilisation de TR lié à la chromatine, entraînant une potentialisation de son activité transcriptionnelle. L'effet de modulation de TET3 sur TR présenté ici est indépendant de son activité hydroxylase de TET3. Ainsi, cette étude met en évidence un nouveau mode d'action de TET3 en tant que régulateur non classique de TR, modulant sa stabilité et son accès à la chromatine plutôt que son activité de transcription intrinsèque. Des mutations du gène codant pour TRα provoquent le symptôme RTHα dont la gravité varie en fonction de la mutation. Les différentes capacités d’interaction des mutants TRα, pertinents pour la maladie de RTHα humaine, avec TET3 pourraient expliquer les différences d’effet dominant négatif. La fonction de régulation de TET3 pourrait s’appliquer plus généralement aux facteurs de transcription des récepteurs nucléaires, car différents membres de la superfamille des récepteurs nucléaires présentent la même interaction avec TET3, tels que AR (récepteur des androgènes), ERR (récepteur des œstrogènes) et RAR (récepteur de l'acide rétinoïque). L'interaction entre TET3 et RAR implique le domaine de liaison ADN de RAR. La pertinence fonctionnelle de l'interaction TET3 / RAR a été étudiée plus en détail dans les cellules souches embryonnaire (cellules ES). L’absence combinée des trois TET a entraîné la diminution de 5hmC et la dérégulation des gènes impliqués dans la différenciation des cellules ES. Parmi les gènes dérégulés, nous avons identifié un sous-ensemble de gènes cibles de l’acide rétinoïque, suggérant que les RAR (récepteurs d'acide rétinoïque) et les TET pourraient travailler ensemble pour réguler la différenciation des cellules ES. Une étude supplémentaire a révélé que les protéines TET peuvent jouer un rôle dans la facilitation du recrutement de RAR aux régions promotrices de ses gènes cibles. En outre, nos résultats montrent un rôle potentiel de l'activité hydroxylase des protéines TET dans la modulation de l'activité transcriptionnelle des RAR. En conclusion, notre travail a identifié les protéines TET comme nouveaux régulateurs des récepteurs nucléaires. Les mécanismes exacts impliqués doivent être étudiés plus avant. / Thyroid hormone (T3) controls both developmental and physiological processes. Its nuclear receptors, thyroid hormone receptors (TRs), are members of the nuclear hormone receptor family which act as ligand-dependent transcription factors. DNA methylation at the fifth position of cytosine is an important epigenetic modification that affects chromatin structure and gene expression. Recent studies have established a critical function of the Ten-eleven translocation (TET) family proteins in regulating DNA methylation dynamics by converting 5-methyl-cytosine (5mC) into 5-hydroxymethylcytosine (5hmC). Studies demonstrated that TETs proteins (including TET1, TET2 and TET3) possess catalytic activity dependent and independent transcriptional regulatory functions. Our study identified TET3 as a new TR interacting protein. The AF2 domain of TR and the catalytic domain and CXXC domain of TET3 are responsible for their interaction. This interaction allows the stabilization of chromatin bound TR, resulting in a potentiation of its transcriptional activity. The modulation effect of TET3 on TR presented here is independent of its hydroxylase activity. Thus this study evidences a new mode of action for TET3 as a non-classical regulator of TR, modulating its stability and access to chromatin rather that its intrinsic transcriptional activity. Mutations in TR cause the RTH symptom which severity varies with the particular mutation. The differential ability of different TRα mutants, relevant for the human RTHα disease, to interact with TET3 might explain their differential dominant negative activity. The regulatory function of TET3 might be more general towards the nuclear receptor transcriptional factors since different members of the superfamily present the same interaction with TET3, such as AR (androgen receptor), ERR (Estrogen-related receptor) and RAR (retinoic acid receptor). The interaction between TET3 and RAR involves the DNA binding domain of RAR. The functional relevance of TET3/RAR interaction was further studied in ES cells. Combined deficiency of all three TETs led to depletion of 5hmC and deregulation of genes involved in ES differentiation. Among the deregulated genes, a subset of RA response genes was identified, suggesting that RARs (retinoic acid receptors) and TETs might work together to regulate ES cell differentiation. Further dissection revealed that TET proteins may have a role in facilitating RAR recruitment to the promoter regions of these RAR target genes. Moreover, our results indicated a potential role of the hydroxylase activity of TET proteins in modulating RAR transcriptional activity. Altogether, our work identified TET proteins as new regulators of NR (Nuclear Receptors). The exact mechanisms involved need to be further studied.

Les furocoumarines sont des métabolites secondaires qui dérivent de la voie de biosynthèse des phénylpropanoïdes. Ces phytoalexines interviennent notamment dans les mécanismes de défense des plantes tels que la résistance aux bioagresseurs. Le déterminisme moléculaire de cette voie de biosynthèse est encore mal connu mais il a néanmoins été démontré depuis les années 1960 que les enzymes catalysant les différentes étapes de la voie la synthèse des furocoumarines appartenaient à différentes familles. Les travaux présentés dans ce document se sont focalisés sur deux familles d'enzymes : les dioxygenases oxoglutarate dépendantes et les cytochromes P450s. La première étape de la voie de biosynthèse des furocoumarines consiste en une ortho-hydroxylation du p-coumarate qui mène à la formation de l'umbelliférone. Basé sur des travaux récents sur Arabidopsis, six gènes codants pour des dioxygénases ont été isolés chez Ruta graveolens, Citrus limetta et Pastinaca sativa. Les protéines correspondantes présentent plus de 58% d'identité avec la Féruloyle 6' Hydroxylase (F6'H) d'A. thaliana. La caractérisation fonctionnelle de ces enzymes a été réalisée dans un système d'expression hétérologue procaryote. Sur les 6 enzymes, trois n'ont pu être exprimée efficacement, et deux présentent une activité F6'H similaire à celle décrite pour A. thaliana. La dernière enzyme dispose de caractéristiques nouvelles non décrites à ce jour. Elle est en mesure de réaliser l'hydroxylation du féruloyle coA et du p-coumaroyle coA. Ces études in vitro ont été complétées par une exploration des fonctions de la protéine dans la plante. Une analyse fine du profil d'expression du gène a permis de mettre en évidence une expression qui est en corrélation avec le niveau de production d'umbelliférone. La fonction de la protéine a également été validée par une analyse des produits formés dans des feuilles de Nicotiana benthamiana transformées transitoirement. Les cytochromes P450 catalysent 60% des réactions de la voie de biosynthèse de furocoumarines. Un travail de criblage fonctionnel de cytochromes P450 identifiés au préalable chez Ammi majus et Thapsia garganica a été entrepris. Les analyses de bio-informatiques et les modifications apportées au niveau du mode opératoire pour l'expression dans la levure ont permis d'émettre des hypothèses concernant le rôle de certains P450 candidats. Ces travaux exploratoires et préliminaires font supposer de nouvelles conjectures relatives à cette voie de biosynthèse / Furanocoumarins are secondary metabolites deriving from the phenylpropanoid biosynthetic pathway. These phytoalexins are especially involved in plant defense mechanisms against insects or phytopatogenous fungi and bacteria. The molecular control of this biosynthetic pathway is still poorly understood even though it has been demonstrated since the 1960s that enzymes catalyzing the different steps are belonging to different enzymatic families. The work presented here is focused on two enzyme families: oxoglutarate dependent dioxygenases and cytochrome P450s. The first step in the furanocoumarins biosynthetic pathway is the ortho-hydroxylation of p-coumarate, which leads to the formation of umbelliferone. Based on a recent work done on Arabidopsis, we isolated six genes encoding dioxygenases from Ruta graveolens, Citrus limetta and Pastinaca sativa. The corresponding proteins share more than 58% identity with the A. thaliana féruloyle 6' Hydroxylase (F6'H). The functional characterization of these enzymes was performed in a prokaryotic heterologous expression system. Of the six enzymes, three could not be functionnaly expressed and two exhibited a similar F6'H activity as described for A. thaliana. The last enzyme has new properties not described to date. It is able to achieve both hydroxylation of féruloyle CoA and p-coumaroyle CoA. These in vitro studies were completed by a functional exploration of the protein in planta. A detailed analysis of the gene expression pattern highlighted a link with the level of umbelliferone synthesis. The function of the protein was also confirmed by an analysis of the products formed in transiently transformed Nicotiana benthamiana leaves. Cytochrome P450s catalyze 60% of the reactions of the furanocoumarin biosynthetic pathway. Therefore, a functional screening of cytochrome P450 previously identified in Ammi majus and Thapsia garganica was undertaken. The bioinformatic analyses and the changes undertaken in the procedure for expression in yeast allowed drawing hypotheses on the function of some of these P450 candidates. These exploratory and preliminary experiments allowed suggesting new hypotheses about the biosynthetic pathway

Made available in DSpace on 2014-07-29T15:25:23Z (GMT). No. of bitstreams: 1 Tese_Eula_Costa.pdf: 1234220 bytes, checksum: 9b0a765b29a3c24c4ab992c52d3cab65 (MD5) Previous issue date: 2009-03-25 / Considering the vast biotechnological applicability described for Beauveria bassiana, the versatility microbial biotransformation exhibits, the important biological activities attributed to the flavonoid quercetin, the therapeutic perspectives of its use, and the activity the enzyme quercetin 2,3-dioxygenase has on quercetin, we intended to evaluate quercetin biotransformation by B. bassiana ATCC 7159 and isolates of B. bassiana collected in the Midwestern Region of Brazil. The objectives of this study were: evaluate the potential of B. bassiana isolates and B. bassiana ATCC 7159 to produce metabolites of quercetin; investigate quercetin 2,3-dioxygenase production by the isolates and B. bassiana ATCC 7159; determine the genetic variability among the isolates of B. bassiana and establish possible correlations between molecular data and quercetin 2,3-dioxygenase production. All isolates and B. bassiana ATCC 7159 were capable of metabolizing quercetin and form compounds described in mammalian quercetin biotransformation studies and isolate IP 94 produced a higher number of metabolites compared with the others. B. bassiana ATCC 7159 and isolates IP 94, IP 98, IP 129, IP 147 produced methylated metabolites, while isolates IP 8, IP 11, and IP 94 produced glucuronidated metabolites. All the isolates produced sulphated metabolites and methylated and glucuronidated metabolites simultaneously and were capable to synthesize quercetin 2,3-dioxygenase. Quercetin 2,3-dioxygenase synthesis on PDSM, used in its biotransformation process was higher than on basic medium. B. bassiana ATCC 7159 and the isolates IP 11 and IP 132 presented the highest quercetin 2,3-dioxigenase activity, whereas the isolates IP 153 and IP 3a presented the lowest ones. Quercetin metabolites formation and quercetin 2,3-dioxygenase production were not correlated with the geographic origin of the isolates. Genetic variability analysis by RAPD allowed the separation of the isolates into three distinct groups and showed high genetic diversity among them; however, the RFLP-PCR of ITS region did not provide characteristic markers to differentiate the isolates. The ITS region sequencing confirmed the identity of the isolates as B. bassiana. The results obtained can lead to the following conclusions: B. bassiana constitutes an interesting alternative to the use of chemical methods and biological systems to produce quercetin metabolites, but is necessary to optimize the biotransformation process in order to obtain a more expressive amount of metabolites; B. bassiana is able to produce quercetin 2,3-dioxygenase, although more detailed studies are needed to explain its production pathway, regulation, and mechanism of action. / Considerando-se a vasta aplicabilidade biotecnológica descrita para Beauveria bassiana, a versatilidade que a biotransformação microbiana apresenta, as importantes atividades biológicas atribuídas ao flavonóide quercetina, as perspectivas quanto ao seu uso terapêutico e ainda a atividade da enzima quercetina 2,3-dioxigenase sobre a quercetina, pretendeu-se avaliar a metabolização da quercetina pela cepa B. bassiana ATCC 7159 e por isolados de B. bassiana obtidos na Região Centro-Oeste do Brasil. Os objetivos específicos do presente estudo foram: avaliar o potencial da cepa B. bassiana ATCC 7159 e dos isolados em produzir metabólitos da quercetina; investigar a produção de quercetina 2,3-dioxigenase pela cepa B. bassiana ATCC 7159 e pelos isolados; determinar a variabilidade genética entre os isolados de B. bassiana e estabelecer possíveis correlações entre dados moleculares e produção de quercetina 2,3-dioxigenase. Todos os isolados e a cepa B. bassiana ATCC 7159 foram capazes de metabolizar a quercetina formando compostos descritos nos estudos da metabolização deste flavonóide em mamíferos e o isolado IP 94 produziu um número maior de compostos quando comparado aos demais. B. bassiana ATCC 7159 e os isolados IP 94, IP 98, IP 129, IP 147 geraram metabólitos metilados, enquanto os isolados IP 8, IP 11 e IP 94 geraram metabólitos monoglicuronados. Todos os isolados estudados geraram metabólitos sulfatados e metabólitos metilados e glicuronados simultaneamente e foram capazes de sintetizar a enzima quercetina 2,3-dioxigenase. A síntese de quercetina 2,3-dioxigenase no meio de cultivo PDSM, utilizado para a biotransformação microbiana da quercetina, foi superior à obtida em meio mínimo. B. bassiana ATCC 7159 e os isolados IP 11 e IP 132 apresentaram maior atividade da quercetina 2,3-dioxigenase, enquanto os isolados IP 153 e IP 3a apresentaram as mais baixas. A formação dos metabólitos da quercetina e a produção de quercetina 2,3-dioxigenase não se relacionaram com a origem geográfica dos isolados. A análise da variabilidade genética por meio de RAPD permitiu dividir os isolados em três grupos distintos e mostrou elevada diversidade genética entre eles; porém, a análise por meio de RFLP-PCR da região ITS não permitiu diferenciar os isolados. A análise da sequência da região ITS confirmou a identidade dos fungos como B. bassiana. Os resultados obtidos permitiram concluir que: a biotransformação microbiana da quercetina por meio do fungo B. bassiana constitui alternativa ao uso de métodos químicos e sistemas biológicos para a produção de metabólitos da quercetina, sendo necessário otimizar o processo de biotransformação para a obtenção de quantidades expressivas dos metabólitos; B. bassiana é capaz de produzir a enzima extracelular quercetina 2,3-dioxigenase, sendo necessários estudos mais detalhados para elucidar sua via de produção, regulação e mecanismo de ação.

Os tumores carcinoides típicos broncopulmonares (TCTB) são considerados neoplasias bem diferenciadas e as menos agressivas dentro do espectro dos tumores neuroendócrinos. Entretanto, metástases linfonodais e hematogênicas tem sido encontradas em número considerável de casos e não existem, até o momento, estudos relacionados aos mecanismos de escape imune tumoral em TCTB. Alguns trabalhos tem relacionado a expressão da enzima indoleamine 2,3-dioxigenase (IDO) em células neoplásicas como fator responsável pela aquisição de tolerância tumoral. Além disso, os níveis de infiltração linfocitária intratumoral parecem estar associados com prognóstico e sobrevida nesses tumores. O principal objetivo deste estudo foi determinar os níveis de expressão intratumorais da IDO e sua possível aplicação como marcador biológico de metástases em TCTB. Além disso, também foi estabelecido o padrão de infiltração linfocitária intratumoral e analisada sua provável correlação com os níveis de expressão da IDO. Portanto, realizou-se uma coorte retrospectiva multicêntrica no qual 64 pacientes submetidos à cirurgia de ressecção de TCTB entre 1981 e 2003 foram selecionados. O período de seguimento pós-operatório foi de 5 anos e a ocorrência de metástases linfonodais (hilar ou mediastinal) e hematogênicas foi avaliada através de tomografia computadorizada. Os níveis da expressão da IDO e de infiltração linfocitária intratumoral foram avaliados através de estudo imunohistoquímico. Os resultados obtidos mostraram que dos 64 pacientes selecionados, 17 (26.5%) apresentaram qualquer tipo de metátases durante o estudo: linfonodal, hematogênica ou ambas. A expressão da IDO foi encontrada em níveis diferentes de intensidade em mais de 80% das células dos TBCT. Entretanto, a análise univariada não mostrou nenhuma diferença significante na expressão da IDO entre grupos com e sem metástase (p=0,9 e p=0,3 pela análise semi-quantitativa e quantitativa, respectivamente). A quantificação dos linfócitos em todos os grupos estudados demonstrou predominância de linfócitos T CD8+, quando comparado aos linfócitos T CD4+(p< 0.01). Nenhuma diferença na infiltração intratumoral de linfócitos T CD8+ foi encontrada entre grupos com e sem metástase (p=0,98). Entretanto, a quantificação de linfócitos T CD4+ foi nula nos grupos com qualquer tipo de metástase (p=0,01), e nos casos com metástase linfonodal (p=0,02). Nenhuma correlação entre os níveis da expressão da IDO e da infiltração linfocitária intratumoral foi identificada nos grupos analisados (r= -0.2 e p=0,1 para ambos os grupos). Conclui-se que, a expressão intratumoral da IDO não apresenta correlação com a ocorrência de metástase nos TBCT. Apesar de nenhuma diferença ter sido identificada na infiltração intratumoral de linfócitos T CD8+ nos grupos com e sem metástase, a ausência de infiltração de linfócitos T CD4+ está associado à ocorrência do evento estudado. Estes linfócitos parecem conferir um efeito protetor evitando o escape tumoral / Typical bronchopulmonary carcinoid tumors (TBCT) are considered the less aggressive neoplasm within the spectrum of neuroendocrine tumors. However, regional nodes and haematogenic metastasis occur in a considerable rate and no data regarding immune escape mechanisms in these tumors are available. Some studies have implicated indoleamine 2,3 dioxygenase (IDO) expression in malignant cells as the responsible for tumor tolerance. Also, levels of tumor infiltrating lymphocytes (TILs) seem to be related with prognosis and survival. Our aim in this study was to determine intratumoral IDO expression levels and the value of this variable as a predictive marker of TBCT metastasis. Thus, TILs pattern was determined and correlation with intratumoral IDO expression analyzed. For this purpose, a multicenter retrospective cohort study was performed and 64 patients operated on for TBCT between 1981 and 2003 were enrolled. Follow-up period was 5 years and regional or haematogenic metastasis was assessed by computerized tomography (CT) scan. Levels of IDO expression and TILs were assessed by immunohistochemical study. The results obtained showed that of all 64 patients, 17 (26,5%) presented with any metastasis during the study: regional nodes, haematogenic or both. IDO expression was found in different intensity levels in over 80% of TBCT cells. However, univariate analysis showed no significant difference in IDO expression between groups with and without metastasis (p=0,9 and p=0,3 for semi-quantitative and quantitative analysis respectively). TILs quantification in all studied groups demonstrated predominance of CD8+ TILs when compared to CD4+ TILs (p<0,01). No difference in CD8+ TILs was found between groups with and without metastasis (p=0,98). However CD4+ TILs quantification was null in the groups with any metastasis (p=0,01), and regional nodes metastasis (p=0,02). No correlation between IDO expression levels and TILs was identified in all analyzed groups(r= -0,2 and p=0,1 for both groups). In conclusion, these data shows that intratumoral IDO expression do not correlate with TBCT metastasis. Even though no difference in CD8+ TILs between groups with and without metastasis was found, absence of CD4+ TILs is associated with the studied event. These cells seem to confer a protective effect against tumoral immune escape

La réponse immune représente une réponse complexe à laquelle correspond une succession d’événements orchestrés finement. Parmi les mécanismes qui régulent la réponse immune, les lymphocytes T régulateurs (Tregs) assurent le maintien de la tolérance en périphérie et le contrôle des réponses immunes adaptatives. Ils représentent une population hétérogène et leurs mécanismes de suppression sont toujours l’objet d’intenses recherches. Suivant le contexte de suppression et leur nature, les lymphocytes Tregs réalisent une inhibition de l’activation des lymphocytes Th, soit directement, soit via la modulation de la fonction des cellules dendritiques (DC). Dans un modèle d’immunisation par des cellules dendritiques chargées de KLH, les lymphocytes Tregs naturels contrôlent sélectivement l’initiation des réponses de type Th1/CTL spécifiques de l’antigène. Le but de ce travail était de définir quels sont les acteurs potentiels du contrôle de cette réponse. A l’aide de l’anticorps PC61 dirigé contre le récepteur CD25 et éliminant les lymphocytes Tregs naturels, nous avons montré que le ligand de costimulation CD70 joue un rôle clé dans leur régulation de la réponse Th1/CTL (Article 1). Ainsi, dans des conditions normales, la cytokine IL-12 induit principalement l’initiation de la réponse Th1 in vivo, tandis qu’en l’absence de lymphocytes Tregs naturels, la voie CD70/CD27 est une voie alternative d’induction de l’IFN-γ. Cette voie d’activation pourrait être opérationnelle dans certains contextes infectieux lorsque les lymphocytes Tregs sont déstabilisés voire éliminés, par exemple lors d’infections par Toxoplasma gondii ou par les virus HTLV1, SIV ou HIV. Nous avons montré que les lymphocytes Tregs naturels diminuent l’expression du ligand CD70 sur les DC, de manière dépendante de son récepteur CD27. Ensuite, nous nous sommes intéressés à une deuxième population de lymphocytes T régulateurs, les lymphocytes Tregs ICOShigh induits in vivo par le traitement avec l’anticorps anti-CTLA-4. Dans le cadre d’une colite induite par l’agent alkylant TNBS et mettant en jeu une réponse Th1, cette population de lymphocytes Tregs amplifiée par le traitement à l’anticorps anti-CTLA-4 régule la réponse immune via la cytokine anti-inflammatoire IL-10 et l’enzyme immunosuppressive IDO (Article 2). Ainsi, les résultats obtenus nous ont permis de répondre à notre objectif et de définir certains mécanismes de suppression des lymphocytes Tregs naturels et des lymphocytes Tregs induits. Dans la dernière partie de ce travail, nous avons cherché à comparer les populations de lymphocytes Tregs naturels et ICOShigh présentes dans l’intestin d’une souris naïve. Une analyse transcriptomique a révélé que ces deux populations s’opposent sur les plans phénotypique et fonctionnel. Nous proposons un modèle dans lequel les deux populations de lymphocytes Tregs agiraient en synergie pour maintenir l’homéostasie intestinale. Les lymphocytes Tregs ICOShigh différenciés au niveau local et continuellement activés contrôleraient la réponse inflammatoire associée à la présence de la flore commensale. Les lymphocytes Tregs naturels, en quiescence dans les ganglions mésentériques, n’interviendraient qu’en cas d’infection par des pathogènes. L’étude des lymphocytes T régulateurs soulève un certain nombre de concepts clés de l’immunité : la spécificité des réponses, la distinction des microorganismes commensaux et pathogènes… Mieux connaître les lymphocytes Tregs dans un modèle murin permettra de mieux comprendre les réponses inflammatoires intestinales chroniques observées chez l'homme et d’envisager, à terme, de nouveaux traitements. / An immune response is complex and implies numerous sequential events. It is regulated by different mechanisms, among which regulatory T cells maintain peripheral tolerance and control adaptive immune responses. Regulatory T cells are very heterogeneous and suppress immune responses through different mechanisms, still under investigation. They can inhibit T cell activation directly or through the modulation of dendritic cell function, depending on their nature and the tissular context. In a dendritic cell-mediated immunization model, naturally occurring regulatory T cells selectively control the priming of antigen-specific Th1/CTL responses. Our goal was to define the potential actors of this control, targeted by natural regulatory T cells. Using the PC61 antibody which targets and depletes these cells, we showed that the costimulation ligand CD70 plays a key role in their control of Th1/CTL responses (first article). We showed that mainly IL-12 provokes Th1 development in normal conditions, wheras CD70 plays a major role in priming Th1 responses in the absence of natural Tregs. This pathway can be operational if regulatory T cells are destabilized or even depleted, for example during infection with Toxoplasma gondii or with HTLV1, SIV or HIV. We showed that natural Tregs downregulate CD70 expression on the surface of DCs. Next, we focused on another regulatory T cell population, induced in vivo by the anti-CTLA-4 mAb treatment. In a model of pro-Th1 colitis, induced by the alkylating agent TNBS, these ICOShigh regulatory T cells exert an IL-10 and IDO-dependant control over the immune response (second article). Thus, we succeeded in determining some control mechanisms of the immune response targeted by two populations of regulatory T cells. Finally, we compared two regulatory T cell populations: naturally occurring regulatory T cells and ICOShigh regulatory T cells from the intestines of naïve mice. A transcriptional analysis revealed two populations phenotypically and functionally distinct. We proposed a model in which these populations act synergistically and both maintain intestinal homeostasis. ICOShigh regulatory T cells might control commensal gut flora-specific inflammatory responses and quiescent natural regulatory T cells from mesenteric lymph nodes might control potential pathogen infections. As a conclusion, this study raises some immunological issues: specificity of immune responses, distinction between commensal and pathogenic microorganisms… A better knowledge of these regulatory populations will lead to a better understanding of human intestinal responses and in the medium term will lead to new therapeutic approaches and tools.

TDO utilizes b-type heme as a cofactor to activate dioxygen and insert two oxygen atoms into free L-tryptophan. We revealed two unidentified enzymatic activities of ferric TDO from Ralstonia metallidurans, which are peroxide driven oxygenation and catalase-like activity. The stoichiometric titration suggests that two moles of H2O2 were required for the production of one mole of N-formylkynurenine. We have also observed monooxygenated-L-tryptophan. Three enzyme-based intermediates were sequentially detected in the peroxide oxidation of ferric TDO in the absence of L-Trp including compound I-type and compound ES-type Fe-oxo species. The Fe(IV) intermediates had an unusually large quadrupole splitting parameter of 1.76(2) mm/s at pH 7.4. Density functional theory calculations suggest that it results from the hydrogen bonding to the oxo group. We have also demonstrated that the oxidized TDO was activated via a homolytic cleavage of the O-O bond of ferric hydroperoxide intermediate via a substrate dependent process to generate a ferrous TDO. We proposed a peroxide activation mechanism of the oxidized TDO. The TDO has a relatively high redox potential, the protonated state of the proximal histidine upon substrate binding as well as a common feature of the formation of ferric hydroxide species upon substrate or substrate analogues binding. Putting these together, we have proposed a substrate-based activation mechanism of the oxidized TDO. Our work also probed the role of histidine 72 as an acid-base catalyst in the active site. In H72S and H72N mutants, one water molecule plays a similar role as that of His72 in wild type TDO. MauG is a c-type di-heme enzyme which catalyze the biosynthesis of the protein-derived cofactor tryptophan tryptophylquinone. Its natural substrate is a monohydroxylated tryptophan residue present in a 119-kDa precursor protein of methylamine dehydrogenase (MADH). We have trapped a novel bis-Fe(IV) intermediate from MauG, which is remarkably stable. A tryptophanyl radical intermediate of MADH has been trapped after the reaction of the substrate with the bis-Fe(IV) intermediate. Analysis by high-resolution size-exclusion chromatography shows that MauG can tightly bind to the biosynthetic precursor and form a stable complex, but the mature protein substrate does not.