Les phytochélatines (PC) sont des polypeptides ayant la structure générale, (alpha-Glu-Cys)n-Gly, où n = 2 à 11. Leur synthèse est induite par un grand nombre de végétaux en réponse à une élévation de la concentration du milieu en métaux, en particulier le cadmium (ci-après, Cd). Le but de cette étude a été de développer un outil pour évaluer la biodisponibilité du Cd dans les eaux douces. Pour ce faire, une méthode analytique a été réalisée afin de déterminer les phytochélatines induites dans les algues C. reinhardtii. Celle-ci consiste à utiliser la chromatographie liquide couplée à la spectrométrie de masse en tandem (LCHP-SM/SM) "on-line". L’ionisation des molécules est celle faite par électronébulisation (IEN) (traduction de electrospray ionisation). L’objectif principal de ce mémoire est la validation de cette méthode : la détermination des courbes de calibration et des limites de détection et l'identification d'interférences potentielles. L’utilisation de dithiothreitol (DTT) à une concentration de 25 mM a été nécessaire à la conservation de la forme réduite des phytochélatines. En effet, suite à la validation de la méthode d’analyse des phytochélatines il a été démontré qu’elle représente un potentiel d’application. Ceci dans la mesure où l’induction des phytochélatines (PC2, PC3 et PC4) dans les algues C. reinhardtii a été possible à deux concentrations de Cd (1 x 10-7 M et 1 x 10 6 M) et ce, après plusieurs temps d'induction (1, 2, 4, et 6 h). Ainsi, l’étude de la stabilité des phytochélatines a été réalisée et toutes les températures examinées ont démontré une diminution des phytochélatines analysées par HPLC-ESI-MS/MS. Il se pourrait que la cause de la dégradation des phytochélatines soit physique ou chimique plutôt que bactérienne. Toutefois, un approfondissement au niveau de la purification de la solution d’extraction serait nécessaire à la mise au point de la dite méthode analytique afin de quantifier les phytochélatines dans l’algue C. reinhardtii. / Phytochelatins (PC) are polypeptides having the general structure, (alpha-Glu-Cys)n-Gly, where n = 2 to 11. Many plants respond to an elevated concentration of metals in environment, particularly Cd, by synthesizing PC. The purpose of this study was to develop a tool to assess the bioavailability of the Cd in fresh water by determining phytochelatins in algae, C. reinhardtii, by online HPLC-ESI-MS/MS. The gold of this work was the validation of the analytical method i.e. the determination of the calibration curves and the limits of detection. The addition of dithiothreitol (DTT), 25 mM, was found to be necessary to maintain the PC in their reduced form for analysis. It was shown that the liquid chromatography coupled to tandem mass spectrometry (HPLC-ESI-MS/MS) technique has excellent potential for PC analysis, however, it will still requires some more work with respect to sample purification. Furthermore, the stability of the PC was evaluated for different sample storage temperatures. At all temperatures studied, some degradation of PC was observed possibly due to physical rather than chemical or bacterial reasons. Finally, the induction of phytochelatins (PC2, PC3 and PC4) was observed in C. reinhardtii for two Cd concentrations (10-7 M and 10-6 M) and for several induction times (1, 2, 4, and 6 h).

CoordenaÃÃo de AperfeiÃoamento de Pessoal de NÃvel Superior / O feijÃo-de-corda tem grande importÃncia socioeconÃmica no Nordeste brasileiro. Entretanto, sua produÃÃo à baixa devido a diversos fatores biÃticos, como, por exemplo, o vÃrus do mosaico severo do caupà (CPSMV, gÃnero Comovirus), que apresenta grande destaque, por causar a virose que mais acomete essa cultura no paÃs. No estudo da interaÃÃo planta-vÃrus, diversos trabalhos mostram que o tratamento de sementes com o etil metanosulfonato (EMS, mutagÃnico quÃmico) resulta no fenÃtipo de resistÃncia em plantas que, anteriormente, apresentavam susceptibilidade à infecÃÃo por vÃrus do gÃnero Potyvirus. Por essa razÃo, o presente estudo teve como objetivo investigar as respostas de defesa bioquÃmicas e fisiolÃgicas das plantas de feijÃo-de-corda do genÃtipo (CE-31) susceptÃvel ao CPSMV (CPI) a partir de sementes tratadas com EMS (0,04% v/v), e avaliar se as plantas mutagenizadas (MCPI), produzidas a partir dessas sementes se tornaram resistentes ao CPSMV. Duas diferentes abordagens foram utilizadas neste trabalho: 1) anÃlises bioquÃmicas (enzimas antioxidantes e conteÃdo de H2O2, PR-proteÃnas e compostos secundÃrios) e fisiolÃgicas (parÃmetros fotossintÃticos e teor de clorofila); 2) abordagem proteÃmica quantitativa (LC-ESI-MS/MS), livre de marcaÃÃo, para identificar proteÃnas responsivas à infecÃÃo viral. Os resultados obtidos demonstram que as plantas MCPI sÃo capazes de induzir respostas bioquÃmicas (aumento de H2O2, induÃÃo de PR-proteÃnas e aumento no conteÃdo de compostos secundÃrios) e alteraÃÃes nos parÃmetros fisiolÃgicos (alta taxa fotossintÃtica e teor de clorofila) que, aparentemente, tÃm relaÃÃo com o fenÃtipo de resistÃncia das plantas mutagenizadas ao CPSMV. Na anÃlise proteÃmica, 99 proteÃnas foram identificadas como sendo diferenciais, das quais 68 aumentaram e 31 diminuÃram em abundÃncia nas plantas MCPI em relaÃÃo as plantas CPI. A anÃlise proteÃmica, mostrou diversas vias metabÃlicas (Metabolismo Redox, Energia e Metabolismo, FotossÃntese, Metabolismo de RNA e Defesa) envolvidas nas respostas de defesa das plantas MCPI frente a infecÃÃo viral. O tratamento das sementes com o EMS, resultou em plantas de feijÃo-de-corda com fenÃtipo de resistÃncia capazes de acionar mecanismos de defesa para impedir a infeÃÃo viral / Cowpea is an important crop that makes major nutritional contributions as a source of proteins and carbohydrates in the diet of many people worldwide. However, its production is impaired due to various stresses including those of biotic origins. Cowpea Severe Mosaic Virus (CPSMV) infects cowpeas leading to severe symptoms and low productivity. Several studies of plant-virus interaction show that seed treatment with Ethyl methanesulfonate (EMS, chemical mutagen), results in a resistant phenotype in plants, which was previously susceptibility, to virus infection of the Potyvirus genus. The aim of this study was to investigate some physiological and biochemical parameters of a susceptible cowpea cultivar (CPI) (CE-31, sin. Pitiuba) in comparison with its derived resistant mutagenized (MCPI), both infected with CPSMV. MCPI plantlets were obtained after treatment of CE-31 seeds with 0.04% EMS. Two different approaches were used in this study: 1) biochemical (antioxidant enzymes and H2O2 content, PR-proteins and secondary metabolites) and physiological analysis (photosynthetic parameters and chlorophyll content); and 2) Label free quantitative proteomic approach (LC-ESI-MS / MS) to identify proteins responsive to viral infection. Our results showed that MCPI had no symptoms of CPSMV infection and biochemical (high H2O2, PR-proteins and secondary compounds [phenolic and lignin]) and physiological responses (High photosynthesis index and chlorophyll content) is activated in MCPI plantlets after CPSMV inoculation. With regard to proteomic analysis, 99 proteins were differentially represented, where these 68 are up- and 31 down represented in MCPI compared to CPI. Regardless whether to CPI (susceptible) or MCPI (mutagenized resistant) plantlets, CPSMV induce changes in proteome profile that involve several biological process (energy and metabolism, photosynthesis, response to stress, oxidative burst, and scavenging). Moreover, these results suggest that the CPSMV responsive proteins in the MCPI represent a complex network involving in resistant mechanisms to CPSMV. Treatment of the susceptible CE-31 genotype seeds with the mutagenic agent EMS induced genomic alterations generating a cowpea mutagenized resistant to CPSMV by apparently inducing classical biochemical and physiological responses against infection

Over the past ten years, the development of High Throughput (HT) synthetic chemistry techniques has allowed the rapid preparation of libraries of hundreds to thousands of compounds. These tools are now extensively used for drug and material discovery programmes. The subsequent development of analytical capabilities to carry out qualitative and quantitative assessment of the compounds generated by HT synthesis as well as their HT screening has led to a dramatic broadening of the scope of HT techniques, ranging from image based analysis techniques to mass spectrometry (MS). Based on the latter, a range of solid phase and solution phase analytical constructs was developed to enable the qualitative and quantitative assessment of mixtures of small compounds, using positive electrospray MS as the sole analytical tool. A version of the construct allowed HT reactivity profiling to be carried out on a range of ten carboxylic acids, ten aldehydes and ten isonitriles in the Ugi 4-component condensation reaction. The effect of various parameters such as the concentration of the monomers on the reactivity was investigated. The elaboration of a HT Hammett parameter assessment method was made possible by the development of an electrophilic version of the construct. The value of the Hammett value was afforded by means of combinatorial Hammett plots and values were successfully evaluated in a HT mode for around thirty anilines with substituents in the meta and para position of the aromatic ring. Finally, analytical constructs were used in an attempt to evaluate enzyme reaction kinetics via the labelling of peptides and small drug fragment with coded constructs, to afford affinity determinations between the enzyme (protease) and peptidic or fragment based substrates.

Over the past decades, electrospray ionization for mass spectrometry (ESI-MS) has become one of the most commonly employed techniques in analytical chemistry, mainly due to its broad applicability to polar and semipolar compounds and the superior selectivity which is achieved in combination with high resolution separation techniques. However, responsiveness of an analytical method also determines its suitability for the quantitation of chemical compounds; and in electrospray ionization for mass spectrometry, it can vary significantly among different analytes with identical solution concentrations. Therefore, we investigated the ESI-response behavior of 56 nitrogen-containing compounds including aromatic amines and pyridines, two compound classes of high importance to both, synthetic organic chemistry as well as to pharmaceutical sciences. These compounds are increasingly analyzed employing ESI mass spectrometry detection due to their polar, basic character. Signal intensities of the peaks from the protonated molecular ion (MH+) were acquired under different conditions and related to compound properties such as basicity, polarity, volatility and molecular size exploring their quantitative impact on ionization efficiency. As a result, we found that though solution basicity of a compound is the main factor initially determining the ESI response of the protonated molecular ion, other factors such as polarity and vaporability become more important under acidic solvent conditions and may nearly outweigh the importance of basicity under these conditions. Moreover, we show that different molecular descriptors may become important when using different types of instruments for such investigations, a fact not detailed so far in the available literature.

Lysophosphatidic acid (LPA) is a bioactive lipid with a plethora of biological functions, including roles in cell survival, proliferation, and migration. Although high-performance liquid chromatography electrospray ionization tandem mass spectrometry (HPLC ESI-MS/MS) technology has been used to measure the levels of LPA in human blood, serum and plasma, current methods cannot readily detect the minute levels of LPA from cell culture. In this study, a novel HPLC ESI-MS/MS method with enhanced sensitivity was developed which allows accurate measurements of LPA levels with a limit of quantitation at approximately 10 femtomoles. The method was validated by quantitation of LPA levels in the media of previously characterized cell lines ectopically expressing autotaxin. Autotaxin overexpression induced an increase in several subspecies of LPA while others remained unchanged. Lastly, this HPLC ESI-MS/MS method was validated via biological assays previously utilized to assay LPA production. Hence, this new HPLC ESI-MS/MS will allow researchers to measure in vitro LPA levels and also distinguish between specific LPA subspecies for the delineation of individual biological mechanisms.

Suzuki-Miyaura cross-coupling is a well-known method for making biaryls. With bifunctional monomers, Suzuki polycondensation (SPC) can be used to make polyaryls. Given the complexity of the reacting solution, studying the mechanism of SPC is extremely tough. To solve this problem, we used tandem mass spectrometric (MS/MS) methods to observe the dynamic behaviour of catalytically relevant species in real time. Catalysis involves a complex soup of reactants, intermediates and products. We used an ESI-MS with a triple quadrupole mass analyzer to monitor the SPC in positive ion mode using pressurized sample infusion (PSI) in real time. Full scan, selected ion recording (SIR), product ion scan, neutral loss scan (NLS) and multiple reaction monitoring (MRM) MS/MS methods were applied. Tetrakistriphenylphosphine palladium(0) was the catalyst of this reaction and a positively charged phosphonium aryl iodide tag (m/z 478) was implemented into the first catalytic cycle, enabling us to track all the intermediate oligomers up to the 4th addition. Product ion scan revealed all the intermediate oligomers lose a triphenylphosphine fragment (m/z 262) which would either come from the complex or the charged tag. Three significant intermediate types were observed in each stage of the catalysis, oxidative addition, transmetallation and reductive elimination and their behavior was studied in a chronogram, normalized to the total ion current. As expected, the use of selected ion recording, and neutral loss scan dramatically improved the signal-to-noise ratio. Ultimately, multiple reaction monitoring showed the best chronogram data due to the fact that this scan acts as a “double filter” in a soup of reactive species and contaminants. Real time reaction monitoring has proven to provide detailed insights regarding a reaction. MS/MS methods are promising for improving data quality, selectivity and sensitivity in reaction monitoring. The principle is broadly applicable to other systems, from an intricate catalytic reaction with short-lived ionic intermediates to a reaction with only a single product generated. Reaction dynamics for an exceptionally complex reaction can be made simple and easy by utilizing tandem mass spectrometry methods in time resolved reaction monitoring. / Graduate

New methodologies for the collection and analysis of biological samples from psychological, physical and emotional stress are described. Currently, there is little research relating to the elemental, VOC and small molecule changes in biological samples as a consequence of stress on the human body, with much of the current research indicating physical symptoms. This research sought to measure chemical changes in three different categories of stress. The first uses an existing PASAT intervention to induce psychological stress and a further two new methodologies using exercise to induce physical stress and a trapped human in a simulation of a collapsed building to induce emotion stress. Psychological, physical and emotional stress elemental profiles are compared against their respective chemical baseline profiles. Skin samples are collected from the foreheads of participants who endured emotional stress while drool saliva, urine, plasma and forehead skin samples were obtained from physically stressed participants. Furthermore, drool saliva is also obtained from the individual who experienced emotional stress.

Abstract available for download.

Palladium-catalyzed reactions have found widespread use in contemporary organic chemistry due to their impressive range of functional group tolerance and high chemo- and regioselectivity. The pioneering contributions to the development of the Pd-catalyzed C-C bond forming cross-coupling reaction were rewarded with the Nobel Prize in Chemistry in 2010. Today, this is a rapidly growing field, and the development of novel methods, as well as the theoretical understanding of the various processes involved are of immense importance for continued progress in this field. The aim of the work presented in this thesis was to develop novel palladium(0)- and palladium(II)-catalyzed reactions. The work involved in achieving this aim led to the development of a Mo(CO)6-mediated carbonylative Stille cross coupling reaction for the preparation of various deoxybenzoins. The protocol utilized convenient gas-free conditions to facilitate the carbonylative coupling of benzyl bromides and chlorides with aryl and heteroaryl stannanes. Mo(CO)6-assisted conditions were then used in the development of a general protocol suitable for the aminocarbonylation of aryl triflates. Both electron-poor and electron-rich triflates were coupled with primary, secondary and aryl amines. In addition, DMAP was found to be a beneficial additive when using sterically hindered or poorly nucleophilic amines. An efficient and convenient method for the synthesis of styrenes from arylboranes was developed, employing the relatively inexpensive vinyl acetate as the ethene source under Pd(II)-catalyzed conditions. The reaction mechanism was studied using ESI-MS, and a plausible catalytic cycle was proposed. A method for the oxidative Heck reaction employing aryltrifluoroborates and aryl MIDA boronates was also developed. Electron-rich and electron-poor olefins were regioselectively arylated under microwave-assisted conditions. Various arylboron species were identified in an ongoing reaction using ESI-MS.    Further investigations led to the development of a direct method for the synthesis of arylamidines from aryltrifluoroborates and cyanamides. Under Pd(II)-catalyzed conditions it was possible to insert the aryl into primary, secondary and tertiary cyanamides. Finally, a desulfitative method for the synthesis of aryl ketones was developed. A variety of aryl sulfinates were effectively inserted into alkyl- and aryl nitriles. The mechanism was further investigated using ESI-MS and a plausible catalytic cycle was proposed.

The aims of the work this thesis is based upon were to develop convenient analytical procedures for determining resin acids in biological and environmental matrices, and apply them to enhance understanding of the occurrence, exposure to and uptake by exposed individuals of resin acids. Particular focus has been on the workplace environment of the Swedish wood pellets industry. Sample extraction procedures and high-performance liquid chromatography/electrospray ionisation-mass spectrometry (HPLC/ESI-MS) methodologies were developed for measuring resin acids in dust, skin and urine samples. Chromatographic separation of abietic (AA) and pimaric acid was achieved by using a polar-embedded C12 stationary phase. The HPLC/ESI-MS method avoids undesirable oxidation of AA, which was found to occur during the derivatisation step in the standard MDHS 83/2 gas chromatography/flame ionisation detection (GC/FID) methodology, leading to false observations of both AA and the oxidation product 7-oxodehydroabietic acid (7-OXO). Personal exposures to resin acids in the Swedish wood pellet production industry were found to be lower, on average, than the British Occupational Exposure Limit for rosin (50 µg/m3). The oxidised resin acid 7-OXO, was detected in both dust and skin samples indicating the presence of allergenic resin acids. A correlation between air and post-shift urinary concentrations of dehydroabietic acid (DHAA), and a trend towards an increase in urinary 7-OXO during work shifts, were also observed. Whether the increase in 7-OXO was due to direct uptake or metabolism of other resin acids cannot be concluded from the results. An efficient HPLC/UV methodology with diode-array detection was developed for screening commercial products for rosin that could be used in laboratories lacking mass spectrometers. Very high concentrations of free resin acids were detected in depilatory wax strips using the method. / At the time of doctoral defense, the following paper was unpublished and had a status as follows: Paper 4: Submitted.