La dénitrification autotrophe utilisant le fer Ferreux est un bioprocédé innovant pour l'élimination des nitrates, en même temps que l'oxydation du fer dans les eaux usées. Les dénitrifiants chimio-autotrophes convertissent le nitrate en azote gazeux et l'oxydation du Fe(II) conduit à la production de précipités de fer ferrique qui peuvent ensuite être enlevés et récupérés. La possibilité de maintenir une dénitrification autotrophe avec le fer ferreux en utilisant une culture mixte de Thiobacillus, un inoculum de boue activée et des cultures pures de la souche Pseudogulbenkiania 2002 et de T. denitrificans dans différentes conditions de pH et d'EDTA:Fe(II) a été initialement étudiée dans des essais biologiques par lots. Des ratios plus faibles d’EDTA:Fe(II) se traduisent par une efficacité et des taux d'élimination des nitrates plus élevés. La culture mixte de Thiobacillus présente le taux d'élimination de nitrate le plus élevé, égal à 1.18 mM•(g VSS•d)-1.Par la suite, la culture mixte de Thiobacillus a été ensemencée dans deux réacteurs à lit tassé à flux montant identiques. Les deux réacteurs (réacteur 1 et 2) ont reçu respectivement 120 et 60 mg / L de nitrate et une alimentation différente de Fe (II) afin de respecter un rapport molaire Fe(II):NO3- de 5:1. L’EDTA a été supplémenté à un rapport molaire EDTA:Fe(II) de 0,5:1. Le pH, le TRH et la température étaient de 6,5-7,0, 31 h et 22 ± 2 ° C. Dans le réacteur 1, le TRH a été raccourci de 31 à 24 h et la concentration de NO3- a été maintenue stable à 250 mg / L. Inversement, le réacteur 2 a été mis en fonctionnement avec un TRH décroissant et une concentration de NO3- en alimentation, maintenant ainsi un taux de charge de NO3- stable. Après environ 80 jours d'incubation, l'élimination des nitrates était de 88% dans le réacteur 1 pour un THR de 31 h. L'élimination de nitrates la plus élevée obtenue dans le réacteur 2 était de 80%. Une diminution du TRH de 31 à 24 h n'a pas affecté l'élimination du nitrate dans le réacteur 1, alors que dans le réacteur 2 l'élimination du nitrate a diminué à 64%.De plus, l'influence des métaux lourds (Ni, Cu, Zn) sur la dénitrification autotrophe utilisant du fer ferreux a été évaluée dans des essais biologiques discontinus, en utilisant les mêmes quatre cultures microbiennes différentes. L'efficacité et les taux d'élimination des nitrates les plus élevés ont été obtenus avec la culture mixte dominante de Thiobacillus, alors que la souche Pseudogulbenkiania de 2002 était la moins efficace. Cu s'est avéré être le métal le plus inhibiteur pour les cultures mixtes. Un impact plus faible a été observé lorsque le Zn a été ajouté. Le Ni présentait l'effet inhibiteur le plus faible. Une sensibilité plus élevée à la toxicité des métaux a été observée pour les cultures pures. Enfin, la caractérisation minérale des précipités obtenus pour les expériences avec du Cu, Ni et Zn a été étudiée. Chez les témoins abiotiques, l'oxydation chimique du Fe (II) a entraîné la formation d'hématite. Un mélange de différents (hydro)oxides de Fe(III) a été observé pour toutes les cultures microbiennes, et en particulier : i) un mélange d'hématite, d'akaganéite et / ou de ferrihydrite a été observé dans les précipités des expériences réalisées avec la culture mixte dominée par la présence de Thiobacillus; ii) en plus d'hématite, de l'akaganeite et / ou de la ferrihydrite, la maghémite a été identifiée lorsque la culture pure de T. denitrificans a été utilisée; iii) l'utilisation de la culture pure de la souche Pseudogulbenkiania 2002 a entraîné la formation d'hématite et de maghémite; enfin, l'enrichissement en boues activées a permis la production d'hématite et de magnétite en plus de la maghémite. Aucune différence concernant la minéralogie des précipités n'a été observée avec l'addition de Cu, alors que l'addition de Ni et de Zn a probablement stimulé la formation de maghémite. Une caractérisation minérale supplémentaire est cependant nécessaire / Ferrous iron mediated autotrophic denitrification is an innovative bioprocess for nitrate removal, simultaneously with iron oxidation in wastewaters. Chemoautotrophic denitrifiers convert nitrate to nitrogen gas and Fe(II) oxidation results in the production of ferric iron precipitates that can be subsequently removed and recovered. The feasibility of maintaining Fe(II)-mediated autotrophic denitrification with a Thiobacillus mixed culture, an activated sludge inoculum and pure cultures of Pseudogulbenkiania strain 2002 and T. denitrificans under different pH and EDTA:Fe(II) conditions was initially investigated in batch bioassays. Lower EDTA: Fe(II) ratios resulted in higher nitrate removal efficiency and rates. The Thiobacillus mixed culture resulted in the highest specific nitrate removal rate, equal to 1.18 mM•(g VSS•d)-1.Subsequently, the Thiobacillus mixed culture was seeded in two identical up-flow packed bed reactors. The two reactors (reactor 1 and 2) were fed with 120 and 60 mg/L of nitrate, respectively, and a different Fe(II) feed in order to respect a molar ratio Fe(II):NO3- 5:1. EDTA was supplemented at a EDTA:Fe(II) molar ratio 0.5:1. The pH, HRT and temperature were 6.5-7.0, 31 h and 22±2°C. In reactor 1, HRT was shortened from 31 to 24 h and NO3- concentration was maintained stable at 250 mg/L. Conversely, reactor 2 was operated with decreasing HRT and feed NO3- concentration, thus maintaining a stable NO3- loading rate. After approximately 80 d of incubation, nitrate removal was 88% in reactor 1 at HRT of 31 h. The highest nitrate removal achieved in reactor 2 was 80%. A HRT decrease from 31 to 24 h did not affect nitrate removal in reactor 1, whereas nitrate removal decreased to 64% in reactor 2.Moreover, the influence of heavy metals (Ni, Cu, Zn) on Fe(II)-mediated autotrophic denitrification was assessed in batch bioassays. The highest nitrate removal efficiency and rates were achieved with the Thiobacillus-dominated mixed culture, whereas Pseudogulbenkiania strain 2002 was the least effective. Cu showed to be the most inhibitory metal for mixed cultures. A lower impact was observed when Zn was supplemented. Ni showed the lowest inhibitory effect. A higher sensitivity to metal toxicity was observed for the pure cultures. Finally, the mineral characterization of the precipitates obtained in the experiments with Cu, Ni and Zn was investigated. In abiotic controls, the chemical Fe(II) oxidation resulted in hematite formation. A mixture of different Fe(III) (hydr)oxides was observed with all microbial cultures, and in particular: i) a mixture of hematite, akaganeite and/or ferrihydrite was observed in the precipitates of the experiments carried out with the Thiobacillus-dominated mixed culture; ii) on top of hematite, akaganeite and/or ferrihydrite, maghemite was identified when the T.denitrificans pure culture was used; iii) the use of the pure culture of Pseudogulbenkiania strain 2002 resulted in hematite and maghemite formation; finally, the activated sludge enrichment allowed the production of hematite and magnetite besides maghemite. No difference in the mineralogy of the precipitates was observed with the addition of Cu, whereas the addition of Ni and Zn likely stimulated the formation of maghemite. Further mineral characterization is however required

Diploma thesis deals with preparation of peripherally functionalized polydentate Schiff ligands, suitable for metal coordination, such as Fe(III) or Co(III). The compounds, formed by this functionalization using organic molecule or stable organic radical, provide coordination site for another central atom. The compounds were synthesized for their potential biological activity. The organic ligands series was prepared, and these ligands were submitted to coordination reactions with selected transition metals. The prepared compounds were characterized by nuclear magnetic resonance, mass spectrometry, electron paramagnetic resonance and X-ray structure analysis.

Microorganisms control many processes pertinent to the stability of radwaste inventories in nuclear storage and disposal facilities. Furthermore, numerous subsurface bacteria, such as Shewanella spp. have the ability to couple the oxidation of organic matter to the reduction of a range of metals, anions and radionuclides, thus providing the potential for the use of such versatile species in the bioremediation of radionuclide contaminated land. However, the organisms promoting these processes will likely be subject to significant radiation doses. Hence, the impact of acute doses of ionizing radiation on the physiological status of a key Fe(III)-reducing organism, Shewanella oneidensis, was assessed. FT-IR spectroscopy and MALDI-TOF-MS suggested that the metabolic response to radiation is underpinned by alterations to proteins and lipids. Multivariate statistical analysis indicated that the phenotypic response was somewhat predictable although dependent upon radiation dose and stage of recovery. In addition to the cellular environment, the impact of radiation on the extracellular environment was also assessed. Gamma radiation activated ferrihydrite and the usually recalcitrant hematite for reduction by S. oneidensis. TEM, SAED and Mössbauer spectroscopy revealed that this was a result of radiation induced changes to crystallinity. Despite these observations, environments exposed to radiation fluxes will be much more complex, with a range of electron acceptors, electron donors and a diverse microbial community. In addition, environmental dose rates will be much lower than those used in previous experiments. Sediment microcosms irradiated over a two month period at chronic dose rates exhibited enhanced Fe(III)-reduction despite receiving potentially lethal doses. The microbial ecology was probed throughout irradiations using pyrosequencing to reveal significant shifts in the microbial communities, dependent on dose and availability of organic electron donors. The radiation tolerance of an algal contaminant of a spent nuclear fuel pond was also assessed. FT-IR spectroscopy revealed a resistant phenotype of Haematococcus pluvialis, whose metabolism may be protected by the radiation induced production of an astaxanthin carotenoid. The experiments of this thesis provide evidence for a range of impacts of ionizing radiation on microorganisms, including the potential for radiation to provide the basis for novel ecosystems. These results have important implications to the long-term storage of nuclear waste and the geomicrobiology of nuclear environments.

Management of contamination from industrial activities and wastes from nuclear power generation and weapons development are arguably amongst the greatest challenges facing humanity currently and into the future. Understanding the mobility of toxic radioactive elements is essential for successful remediation strategies and safe management of our nuclear waste legacy (DEFRA, 2008). Interactions between minerals and radionuclides, such as sorption and precipitation, govern the mobility of the contaminants through the subsurface environment. Microbial metabolic processes (redox cycling or release of metabolites) have the potential to affect drastically these abiotic interactions. Microbially-driven mineralisation processes could provide long-term solid-phase-capture solutions to radionuclide contamination problems and support safety cases for geological disposal of radioactive waste. The recent advancements at the intersection between mineralogy, microbiology and radiochemistry were reviewed with the aid of a cluster analysis (Self-Organising Map). This is a relatively novel method of creating a map of the ‘research landscape’ which provides a visual summary of the reviewed literature and can help to identify areas of promising and active research as well as less researched interdisciplinary areas. It is the first time this tool has been applied to research literature on this interdisciplinary topic, and it highlighted the need to gain further understanding of ternary systems including bacteria, minerals and radionuclides. The analysis showed that phyllosilicates are of interest, but few studies have explored the properties of the Fe(II)/Fe(III)-containing micas biotite and chlorite. The ability of model Fe(III)-reducing microorganisms to reduce Fe(III) in biotite and chlorite was demonstrated in batch model systems. In chlorite, approximately 20% and in biotite ~40% of the bulk Fe(III) was transformed to Fe(II) by this reduction. To our knowledge, this is the first study to show the availability of Fe(III) in biotite for such reduction and the ability of the model organism Shewanella oneidensis MR-1 to conserve energy for growth using Fe(III) in biotite as the sole electron acceptor. The microbial Fe(III) reduction led to a decrease in the sorption of Cs and Sr by chlorite, but had very little effect on sorption to biotite. The data indicate that remediation strategies based on microbial Fe(III) reduction may exacerbate the movement of Cs and Sr through strata where sorption is dominated by phyllosilicates, particularly chlorite. While microbial Fe(III) reduction had only a slight effect on the sorption properties of biotite and chlorite, it drastically altered their redox properties. Previously bioreduced biotite and chlorite readily removed Cr(VI), Tc(VII) and Np(V) by surface-mediated reduction. The minerals were also able to reduce U(VI), but solution chemistry affected this reaction, reflecting the complexity of the biogeochemistry of this actinide. Overall, this work highlights the importance of decoupling microbial and geochemical processes in developing a holistic understanding of radionuclide behaviour in the environment. This body of work forms the thesis is entitled ‘Mineralisation and Biomineralisation of radionuclides’, and was prepared by Diana Roumenova Brookshaw for submission in August 2013 for the degree of Doctor of Philosophy to the University of Manchester.

The presence of pharmaceuticals and personal care products (PPCPs) in the environment has become a matter of concern during the last decade. Increased production of PPCPs along with their increased use has led to release of these compounds in the environment via various routes. PPCPs includes large group of compounds including veterinary and human antibiotics, analgesics and anti-inflammatory drugs, psychiatric drugs, β-blockers, X-ray contrasts, and steroid hormones, etc. Many of the compounds used in PPCPs have been shown to possess adverse effects to living organisms and act as endocrine disrupting agents (ECDs). This dissertation includes the investigation of the occurrence of antibiotic compounds added to personal care product and the transformation of hormones used in pharmaceuticals such as contraceptives. The results obtained in this study can provide information on the fate and transformation of the studied compounds once released in the environment. An analytical method employing sonication extraction and HPLC-ESI-MS detection was developed. The developed method was used to detect antibiotic compounds triclosan (TCS) and triclocarban (TCC) in biosolids-applied soil and biosolids. Both TCS and TCC were detected at high concentrations in biosolids and at lower concentrations in biosolids-applied soil. TCS and TCC concentrations decreased in biosolids composts and in biosolids-applied soil collected at deeper depths. The developed method was able to provide efficient detection limits and reliable quantification of target compounds. A molecularly imprinted polymer (MIP) was synthesized to achieve efficient clean-up of TCS and TCC from biosolids-applied soil and biosolids samples using 4,4’- DBP-4-vp-EGDMA. The motivation behind this project was to be able to eliminate the use of expensive instruments such as LC-MS and employ easily available instruments such as LC-UV. The synthesized MIP was able to achieve efficient clean-up and allowed quantification and identification of TCS and TCC in a complex matrix. Transformation of hormones such as 17β-estradiol, estriol, ethynlestradiol, estrone and testosterone was studied by employing Fe (III)-saturated montmorillonite catalysts. The use of Fe (III) – saturated montmorillonite as a catalyst proved be to very efficient in transformation of the studied hormones. Complete removal of hormones was observed in aqueous environment. LC-UV was used for detection and quantification of hormones.

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Dans cette étude, un nouveau complexe de fer est utilisé dans des processus d’oxydation avancée pour la dégradation de polluants organiques présents dans l’eau. Le fer ferrique (Fe(III)) et l’acide éthylène diamine-N,N’-disuccinique (EDDS) forment un complexe Fe(III)-EDDS dont la structure a été mise en évidence durant ce travail. Les propriétés photochimiques du complexe ont ensuite été évaluées en fonction de différents paramètres physico-chimiques dont le pH qui est apparu comme un paramètre clé pour l’efficacité des processus testés. Ensuite nous avons donc travaillé sur l’utilisation de ce complexe dans les processus de Fenton modifié, photo-Fenton et comme activateur des persulfates (S2O82-). Nos expériences ont été réalisées en présence du 4-tert-butylphénol (4-t-BP) qui est connu pour être un perturbateur endocrinien. Nous avons ensuite mis en évidence les conditions optimales du traitement pour la dégradation du 4-t-BP. Il est apparu que le pH joue un rôle très important et qu’en présence de ce complexe de fer, l’efficacité est plus importante pour des pH neutre ou légèrement basique. L’identification des radicaux oxydants responsables de la dégradation du polluant a également été réalisée. Dans ce cadre nous avons montré que le radical sulfate joue un rôle plus important que le radical hydroxyle lors du processus d’activation des persulfates. / Advanced Oxidation Processes (AOPs) have been proved to be successfully applied in the treatment of sewage. It can decolorize the wastewater, reduce the toxicity of pollutants, convert the pollutants to be a biodegradable by-product and achieve the completed mineralization of the organic pollutants. The Fenton technologies which are performed by iron-activated hydrogen peroxide (H2O2) to produce hydroxyl radical (HO•) has been widely investigated in the past few decades. Recently, Sulfate radical (SO4•-) which was produced by the activation of persulfate (S2O82-) is applied to the degradation of organic pollutants in water and soil. It is a new technology recently developed. It is also believed to be one of the most promising advanced oxidation technologies.In this study, a new iron complex is introduced to the traditional Fenton reaction. The ferric iron (Fe(III)) and Ethylene diamine-N,N′-disuccinic acid (EDDS) formed the complex named Fe(III)-EDDS. It can overcome the main disadvantage of traditional Fenton technology, which is the fact that traditional Fenton technology can only perform high efficiency in acidic condition. Simultaneously, EDDS is biodegradable and it is one of the best environment-friendly complexing agents. On the other hand, the transition metal is able to activate S2O82- to generate SO4•-. Therefore, Fe(III)-EDDS will also be applied to activate S2O82- in the present study. 4-tert-Butylphenol (4-t-BP) has been chosen as a target pollutant in this study. It is widely used as a chemical raw material and is classified as endocrine disrupting chemicals due to the estrogenic effects. The 4-t-BP degradation rate (R4-t-BP) is used to indicate the efficiency of the advanced oxidation processes which are based on Fe(III)-EDDS utilization. The main contents and conclusions of this research are shown as follows:In the first part, the chemical structure and properties of Fe(III)-EDDS and the 4-t-BP degradation efficiency in UV/Fe(III)-EDDS system were studied. The results showed that Fe(III)-EDDS was a stable complex which was formed by the Fe(III) and EDDS with the molar ratio 1:1. From the photoredox process of Fe(III)-EDDS, the formation of hydroxyl radical was confirmed including that HO• is the main species responsible for the degradation of 4-t-BP in aqueous solution. Ferrous ion (Fe(II)) was also formed during the reaction. With the increasing Fe(III)-EDDS concentration, 4-t-BP degradation rate increased but is inhibited when the Fe(III)-EDDS concentration was too high. Indeed, Fe(III)-EDDS is the scavenger of HO•. pH value had a significant effect on the degradation efficiency of 4-t-BP that was enhanced under neutral or alkaline conditions. On the one hand, Fe(III)-EDDS presented in the FeL-, Fe(OH)L2-, Fe(OH)2L3-, Fe(OH)4- four different forms under different pH conditions and they had different sensitivity to the UV light. On the other hand, pH value affected the cycle between Fe(III) and Fe(II ). The formation of hydroperoxy radicals (HO2•) and superoxide radical anions (O2•-) (pka = 4.88) as a function of pH was also one of the reasons. It was observed that O2 was an important parameter affecting the efficiency of this process. This effect of O2 is mainly due to its important role during the oxidation of the first radical formed on the pollutant. (...)

PhD thesis - Faculty of Science / The main aim of this thesis has been to study the way in which Fe(III) and Co(II) incorporation into Si-MCM-41 synthesis gels affects the properties of the unmodified material. Another aim was to investigate the influence of these hetero-atoms on the dispersion and particle size distribution as well as the catalytic activity of supported Au nanoparticles in the CO oxidation reaction. Si-MCM-41 has been successfully synthesized in this work using mixtures containing CTAB as a structure-directing agent (SDA) and water-glass as a SiO2 source. Replacement of water-glass with pre-calcined Si-MCM-41 for SiO2 source in the secondary synthesis step has produced Si-MCM-41 with improved structural properties (XRD, HRTEM and Raman spectroscopy), including restructured and more crystalline pore walls (Raman spectroscopy). The conventional shortcomings of Si-MCM-41 as a support for catalyticallyactive (transition) metal components such as low hydrothermal stability, low PZC, lack of cation exchange capacity and no reducibility have been partially addressed by modification with Fe(III) and Co(II). The premodification was achieved both during framework synthesis and after synthesis by the incipient wetness impregnation (IWI) method. As opposed to the one-pot synthesis of metal-containing derivatives, the IWI method gave materials with high metal loadings and maximal retention of the properties of pristine Si-MCM-41. On the other hand, metal incorporation during synthesis to a loading of ~8.8 wt% using aqueous solutions of metal precursors showed some collapse of the mesostructure. Consequently methods were sought to incorporate this amount of metal (and up to double, i.e., 16 wt%) with maximal retention of the MCM-41 characteristics. These methods included (i) using Si-MCM-41 as a SiO2 source, (ii) dissolving the metal precursors in an acid solution before inclusion into the synthesis gel, and (iii) using freshly precipitated alkali slurries of the metal precursors. The first method produced a highly ordered 16wt% Fe-MCM-41 material with excellent reducibility (TPR showed three well-resolved peaks) and pore-wall structure (Raman spectroscopy). Like the aqueous route, the acid-mediated metal incorporation route did not produce ordered materials at metal contents of ~16 wt%. The base precipitate route produced highly ordered composite materials up to 16 wt% metal content, with characteristics similar to those of Si-MCM-41 (XRD, BET and HRTEM), although some metal phases were observed as a separate phase on the SiO2 surface. Thus, metal-containing MCM-41 materials could be obtained with conservation of MCM-41 mesoporosity. Raman spectroscopic studies have shown that the effect of transition metal incorporation in MCM-41-type materials is to strengthen the pore walls (shift of Si-O-Si peaks to higher frequencies), while TPR studies revealed that the essentially neutral framework of Si-MCM-41 could be rendered reducible by transition metal incorporation. Gold-containing mesoporous nanocomposites were prepared by both direct synthesis and post-synthetically. Catalysts prepared by direct hydrothermal synthesis were always accompanied by formation of large Au particles because of the need to calcine the materials at 500 oC in order to remove the occluded surfactant template. The presence of transition metal components in Me-MCM-41 (Me = Fe and Co) has been found to play a significant role in the particle size distribution and also the dispersion of Au nanoparticles when these materials were used as supports. In general, a base metal-containing support was found to produce smaller Au nanoparticles than the corresponding siliceous support. It has been proposed that the transition metal components serve as anchoring or nucleation sites for the Au nanoparticles, which are likely to sinter during calcination. The anchoring sites thus retard the surface mobility of Au at calcination temperatures above their TTammann. The use of the Au/Me-MCM-41 materials as catalysts in the CO oxidation reaction has led to the following observations: (i) catalyst on metal-containing supports showed better activity than those on Si-MCM-41, probably due to the induced reducibility in metal-MCM-41, (ii) catalysts prepared by direct synthesis showed inferior activity owing to large Au particles, (iii) increasing Au content improves the catalytic performance, (iv) increasing the Fe content of the support at constant Au improves the catalytic performance, and (v) changing the base metal component of the support from Fe to Co led to a significant improvement in catalytic activity. The similarity of the apparent activation energies (Ea) for the 5 wt% Au-containing 5 wt% Fe- and 5 wt% Co-MCM-41 suggested that the difference in catalytic activity is associated with the number of active sites possessed by each catalyst system. The observed order of catalytic activity of these 5 wt% Au-containing systems in terms of the support type is: Co-MCM-41 > Fe-MCM-41 > Si-MCM-41. This was further supported by the average Au particle size, which, in terms of the support, followed the order Co-MCM-41 < Fe-MCM-41 < Si-MCM-41. Thus, metal-support interactions between Au and MCM-41 have been enhanced by introducing Fe(III) and Co(II), which also induced framework charge, ion exchange capacity (IEC) and reducibility in the neutral siliceous support.

The bioavailability of iron is limited by the solubility of Fe(III) at circumneutral pH. In the High Nutrient-Low Chlorophyll (HNLC) zones of the ocean, the natural or anthropogenic addition of iron stimulates primary productivity and consumes carbon dioxide. As a result, iron fertilization has been proposed to mitigate anthropogenic carbon emissions and lower global temperatures. The natural sources of iron to the ocean are not fully constrained and include eolian depositions as well as inputs from continental shelf sediments, rivers, hydrothermal vents, and icebergs. Regardless of their source, the effectiveness of iron additions in promoting carbon fixation depends on the presence of organic ligands either natural or produced by microorganisms that stabilize or solubilize Fe(III) at neutral pH. For example, siderophores are well known to be expressed extracellularly by prokaryotes in the photic zones of the oceans to increase the bioavailability of iron. In this dissertation, the production of iron nanoparticles is demonstrated in vent fluids from the 90 North hydrothermal system. These iron nanoparticles may either catalyze the oxidation of sulfide to thiosulfate and produce a potential electron acceptor for microbial respiration or provide a source of iron that stimulates primary production at great distances from the hydrothermal vents. In addition, dissolved iron under the form of soluble organic-Fe(III) complexes is demonstrated to constitute a significant source of iron in estuarine sediments that receive large amounts of particulate iron from flocculation and precipitation at the salinity transition of this estuary. A novel competitive ligand equilibration absorptive cathodic stripping voltammetry (CLE-ACSV) technique reveals that the speciation of iron changes from largely colloidal or particulate in the upper estuary to truly dissolved organic-Fe(III) in the lower estuary. It is also demonstrated that organic-Fe(III) complexes are produced far below the sediment-water interface, suggesting that dissimilatory iron-reducing bacteria may play an important role in their production. These complexes then diffuse across the sediment-water interface and provide a significant source of iron to the continental shelf. The mechanism of reduction of iron oxides by iron-reducing bacteria is not fully understood and presents a unique physiological problem for the organism, as the terminal reductase has to transfer electrons to a solid electron acceptor. In this dissertation, it is demonstrated for the first time using random mutagenesis that the respiration of solid Fe(III) oxides by Shewanella oneidensis, a model iron-reducing prokaryote, first proceeds through a non-reductive dissolution step involving organic ligands that are released extracellularly by the cells. These soluble complexes are then reduced by the organism to produce Fe(II) and recycle the ligand for additional solubilization. Incubations with deletion mutants of the proteins involved in the respiration of Fe(III) revealed that the type-II secretion system, which translocates proteins on the outer membrane of gram-negative bacteria, is involved in the production of organic-Fe(III) complexes by secreting an endogenous iron-solubilizing ligand or a protein involved in the biosynthesis of this ligand on the outer membrane. In addition, periplasmic decaheme cytochromes produced by Shewanella appear to be involved in the mechanism of production of the endogenous organic ligand either directly or through a sensing mechanism that controls its production. In turn, two decaheme cytochromes positioned on the outer-membrane and hypothesized to be involved in the electron transfer to the mineral surface do not appear to be involved in the solubilization mechanism, suggesting either that the cells regulate the ligand production via periplasmic sensing systems or that these cytochromes are not involved in the solubilization mechanism. Altogether this research shows the production of organic-Fe(III) complexes in sediments generates a significant flux of dissolved iron to support primary production in continental shelf waters and that these complexes may be partly produced by iron-reducing bacteria. Indeed, experiments with a model organism demonstrate dissimilatory iron reducing bacteria produce endogenous organic ligands with high iron-binding constants to non-reductively solubilize iron oxides during the anaerobic respiration of iron oxides. The organic ligand is apparently recycled several times to minimize the energy cost associated with its biosynthesis. These findings demonstrate that the solubilization of iron oxides by organic ligands may be an important, yet underappreciated process in aquatic systems.