How parasites influence the population dynamics of their hosts depends on 1) theproportion of individuals that carry the infection in the population, 2) what type of individuals aremost susceptible to infection and 3) the fitness effects of infection. In this study I first investigate thefrequency of malaria strains transmitted in the African winter quarters or at the European breedinggrounds in collared flycatchers (Ficedula albicollis). I then zoom in on the relationship between avianmalaria infection status and condition, expression of sexually selected ornament and reproductiveperformance of male collared flycatchers. I found that female flycatchers are more likely to beinfected than males and that both sexes have a large bias towards infection with European strains ofmalaria. Infected male flycatchers have higher reproductive success and tend to have largerornaments but there was no detected relationship between malaria infection and male condition.This is the first example, that I am aware of, of a positive relationship between malaria infection andreproductive success.

Between closely related species there are genomic regions with a higher level of differentiation compared to the rest of the genome. For a time it was believed that these regions harbored loci important for speciation but it has now been shown that these patterns can arise from other mechanisms, like recombination. The aim of this project was to estimate the recombination landscape for red-breasted flycatcher (Ficedula parva) and taiga flycatcher (F. albicilla) using patterns of linkage disequilibrium. For the analysis, 15 red-breasted and 65 taiga individuals were used. Scaffolds on autosomes were phased using fastPHASE and the population recombination rate was estimated using LDhelmet. To investigate the accuracy of the phasing, two re-phasings were done for one scaffold. The correlation between the rephases were weak on the fine-scale, and strong between means in 200 kb windows. 2,176 recombination hotspots were detected in red-breasted flycatcher and 2,187 in taiga flycatcher. Of those 175 hotspots were shared, more than what was expected by chance if the species were completely independent (31 hotspots). Both species showed a small increase in the rate at hotspots unique to the other species. The low number of shared hotspots might indicate that the recombination landscape is less conserved between red-breasted and taiga flycatchers than found between collared and pied flycatcher. However, the investigation of the phasing step indicate that the fine-scale estimation, on which hotspots are found, might not be reliable. For future analysis, it is important to use high-quality data and carefully chose methods.

Climate change is affecting the distribution of species, sometimes making previously separated species come into secondary contact. For closely related species, this often leads to competition and sometimes also hybridization, which can have negative effects on genetic bio? diversity. Collared flycatcher (Ficedula albicollis) and pied flycatcher (Ficedula hypoleuca) are two closely related species that hybridize where they meet on the Swedish islands Gotland and Öland. Studies from Gotland and the north of Öland have shown that the pied flycatcher is outcompeted and displaced from favourable, high-quality habitat by the collared flycatcher, leading to a decrease in the number of pied flycatchers in deciduous forest. However, this has not been shown for the ecologically important and one of the largest deciduous forests in Sweden, the Mittland forest located in central Öland. Here I use census data collected during two periods separated by 37 years from the Mittland forest to investigate habitat choice and competition between the two species. Although the number of collared flycatcher has greatly increased in the area, I show that the collared flycatcher has not outcompeted the pied flycatcher from favourable habitat. I also show that pied flycatcher does not have a preference for coniferous forest. Lastly, I show that the two species have a near complete overlap of habitat niches. These results indicate that they are in direct competition over the favourable habitat, that there is no equilibrium between the species and the collared flycatcher might still be expanding in the Mittland forest. Allowing more time to pass and further research will show if the pied flycatcher will be displaced from the high-quality habitats in this area or not.

Parental care can be important especially in passerine birds and can depend on environment, food availability and behaviour. A behaviour that can affect the food supply for the offspring is neophobia, the fear of novel objects. The more fear the bird exhibits the less it visits the nest with food. In my study I aimed to examine neophobia and how it differed based on sex and if offspring number and weight influenced the behaviour. Video recordings of collared flycatchers nest boxes were used to see how the behaviour differed by placing a novel object on the nest box. The behaviours tested were duration of perching, hovering and visit including latency and frequency of visit. The results showed that there was a significant difference between the sexes in duration, latency, and frequency of visit but also duration of perching before and after placing a novel object on the nest box. In addition, my results showed that nestling weight significantly influenced frequency of visit and nestling number influenced duration of visit. The study shows that the collared flycatchers do express neophobia differently based on the sex and the nestling’s weight and number. Future studies could investigate if neophobia is a plastic behaviour and the effects of prolonged exposure to novel objects whichcould change the offspring’s survival chances or even the nestling’s behaviour.

The closely related species pied flycatcher (Ficedula hypoleuca) and collared flycatcher (F. albicollis) co-occur on the Swedish island of Öland, where they compete over similar resources. The majority of male pied flycatchers have been found to incorporate elements of the collared flycatcher song in their repertoire. Given that birdsong is partly inherited and partly learned, the relative contribution of genetic predispositions versus acoustic stimuli varies across different species. The results show that in pied flycatchers, song acquisition is tightly correlated with imprinting, and can therefore be greatly influenced by heterospecific tutors in their surroundings, i.e. male collared flycatchers. I found that pied males are capable of not only memorizing collared song elements, but also producing them with high fidelity. Thus, I infer that pied flycatchers are characterized by a high degree of vocal plasticity.

Sexual reproduction entails complex co-evolution between the sexes, necessary for successful fertilization, ensuring individual and population-level fitness. Interfertility is the main criterion for species definition and understanding speciation requires detailed studies of reproductive barriers. However, many studies on reproductive barriers are constrained to infer evolutionary processes from patterns. In this thesis, I focus on a hybrid zone between collared and pied flycatchers (Ficedula albicollis and hypoleuca) on the island of Öland, and a trait that is essential for fertilization: sperm. Long-term monitoring of these species, combined with recent advances in molecular tools, allow me to study how complex on-going intersexual and interspecific interactions influence reproductive isolation in this young hybrid zone. I start by exploring the links between pre- and postmating sexual selection within collared flycatchers (paper I and II). I show that secondary sexual characters and indirect mate-choice benefits are tightly linked to physiology (paper I), and that a male’s attractiveness and dominance status dictate which sperm traits are optimal, as a male’s fertilization success depends on an interaction between sperm and display traits (paper II). I then report a source of strong postzygotic isolation between recently diverged collared and pied flycatchers: impaired spermatogenesis resulting in absence of mature sperm cells in hybrid males (paper III). I show however that pied flycatcher females, who are most exposed to hybridization, can mitigate these costs through mechanisms of cryptic female choice impairing heterospecific sperm performance, allowing them to bias paternity towards pure-species offspring (paper IV). Finally, by exploring the testes transcriptomes and sperm proteomes of both species, I highlight the importance of gene and protein regulation mechanisms in facilitating phenotypic divergence between these species (paper V). Thus, my thesis reveals complex interactions between primary and secondary sexual characters in a wild bird and suggests that mechanisms of sexual selection are tightly linked to essential physiological functions. I also show that genetic incompatibilities can evolve rapidly despite low genome-wide levels of divergence but that divergence in regulatory regions and proteins potentially allows fast evolution of molecular mechanisms impairing or preventing costly heterospecific fertilization.

The role of divergent climate adaptation in speciation has received surprisingly little scientific attention. My dissertation research focused on how resting metabolic rate (RMR) relates to the build up of prezygotic and postzygotic isolation in a natural Ficedula flycatcher hybrid zone. RMR is the amount of energy an organism needs to run its internal organs. Since RMR is related to life history traits and thermoregulation in other systems, it is likely to affect speciation processes at secondary contact. I found that adult collared flycatchers displace pied flycatchers into increasingly poor habitats (Paper I). Pied nestlings exhibit lower RMR in poor environments (Paper II), which may promote regional coexistence and habitat isolation by making it possible for pied flycatchers to escape competition from collared flycatchers and reduce the risk of hybridization by breeding in the poorer habitats. Further, I found that while collared flycatcher nestling RMR was not environmentally-dependent (Paper II, Paper III), those collared flycatcher nestlings that had a lower RMR in poor environments tended to have higher condition (Paper III). Further, RMR was genetically linked to a sexual ornament in collared males that has previously been shown to be beneficial in poor environments. Lastly, I found that by seven days old, nestlings increase their metabolic rate when listening to song, indicating that they are listening, and by 9 days they can discriminate between songs (Paper IV). Taken together, RMR could affect pre-zygotic isolation via correlations with life history strategies, song and sexual ornaments. RMR is also related to post zygotic isolation in Ficedula flycatchers. I found that flycatcher hybrids tended to have a higher RMR than the parental species (Paper V), and that there were many differentially expressed genes in energetically expensive organs in hybrids that were related to metabolic function (Paper VI). Thus, metabolic dysfunction, possibly caused by genetic incompatibilities, in Ficedula flycatcher hybrids could be a factor leading to infertility and postzygotic isolation between the parental species. Overall, I find that RMR could be a general physiological trait that affects both pre- and postzygotic isolation in hybridizing species at secondary contact, and ought to be more thoroughly considered in speciation research.

<p>Studies of hybrid zones offer important insights into the process of speciation. Much of the knowledge to be gained is dependent on an accurate estimation of the strength of pre- and post-zygotic isolation between hybridizing taxa. My results demonstrate that hybridization can variously affect different components of fitness. In Ficedula flycatchers, late-breeding females may directly benefit from pairing with a heterospecific male by gaining access to superior territories. The hybrid offspring possess an immune system that is as equally well functioning as in the parental species (the collared, F. albicollis, and pied flycatcher, F. hypoleuca). However, I found that a severe reduction in fertility persists for at least three generations after the actual hybridization event. Combining all information about the reproductive success of hybridizing individuals and their descendents revealed that postzygotic isolation between flycatchers is very strong; hybridizing individuals leave almost no descendents. This thesis presents one of few comprehensive summaries of the selection for/against assortative mating in a natural hybrid zone. These findings suggest a central role for intrinsic postzygotic isolation as a reproductive barrier separating newly evolved bird species, and contrast previous suggestions that postmating isolation is the slowest of the reproductive barriers to evolve in birds.</p><p>Despite this strong selection against hybridization, pre-mating isolation is incomplete. Hybridization often results from females lacking conspecific partners, but appears to be also caused by errors in species recognition. Much of this error probably reflects the short period of time that pied flycatchers on Gotland and Öland have been in sympatry. Compared to collared flycatchers, pied flycatchers are poorer able to discriminate between conspecific and heterospecific song, and male pied flycatchers more often falsely signal their own identity through heterospecific song copying. However, despite colonising the study site from other sympatric populations and having very little gene flow from allopatry, collared flycatchers also possess traits (e.g. delayed plumage maturation) that increase their hybridization risk. Once pre-mating isolation is strong, the rarity of hybridization probably inhibits further selection against traits promoting interspecific mating, especially when such traits may be beneficial in other contexts. This thesis highlights complex interactions between factors affecting hybridization rate that would not be detected if such a study were not field-based. Furthermore, it showcases likely examples in nature of a number of theoretical objections to the evolution of pre-mating barriers between populations living in sympatry.</p>

Studies of hybrid zones offer important insights into the process of speciation. Much of the knowledge to be gained is dependent on an accurate estimation of the strength of pre- and post-zygotic isolation between hybridizing taxa. My results demonstrate that hybridization can variously affect different components of fitness. In Ficedula flycatchers, late-breeding females may directly benefit from pairing with a heterospecific male by gaining access to superior territories. The hybrid offspring possess an immune system that is as equally well functioning as in the parental species (the collared, F. albicollis, and pied flycatcher, F. hypoleuca). However, I found that a severe reduction in fertility persists for at least three generations after the actual hybridization event. Combining all information about the reproductive success of hybridizing individuals and their descendents revealed that postzygotic isolation between flycatchers is very strong; hybridizing individuals leave almost no descendents. This thesis presents one of few comprehensive summaries of the selection for/against assortative mating in a natural hybrid zone. These findings suggest a central role for intrinsic postzygotic isolation as a reproductive barrier separating newly evolved bird species, and contrast previous suggestions that postmating isolation is the slowest of the reproductive barriers to evolve in birds. Despite this strong selection against hybridization, pre-mating isolation is incomplete. Hybridization often results from females lacking conspecific partners, but appears to be also caused by errors in species recognition. Much of this error probably reflects the short period of time that pied flycatchers on Gotland and Öland have been in sympatry. Compared to collared flycatchers, pied flycatchers are poorer able to discriminate between conspecific and heterospecific song, and male pied flycatchers more often falsely signal their own identity through heterospecific song copying. However, despite colonising the study site from other sympatric populations and having very little gene flow from allopatry, collared flycatchers also possess traits (e.g. delayed plumage maturation) that increase their hybridization risk. Once pre-mating isolation is strong, the rarity of hybridization probably inhibits further selection against traits promoting interspecific mating, especially when such traits may be beneficial in other contexts. This thesis highlights complex interactions between factors affecting hybridization rate that would not be detected if such a study were not field-based. Furthermore, it showcases likely examples in nature of a number of theoretical objections to the evolution of pre-mating barriers between populations living in sympatry.

Abstract Animals need information about local conditions to make optimal fitness-enhancing decisions such as where to breed. Information can be acquired by personal sampling of the environment, but it can also be acquired from other individuals. The latter is termed social information use. Social information use has gained a lot of attention in modern ecology because it affects principal ecological phenomena such as animal distribution and resource use. Social information use is not restricted to obviously cognitive mammals and birds but is also found in e.g. reptiles, fish and insects. Social information use studies have thus far been concentrated on situations with one social information user and one (often the same) source species. The community-wide consequences of social information use have almost exclusively been considered in theoretical studies. In this thesis, I studied empirically social information use in the nest site selection within and between species in a cavity-nesting bird community consisting of the collared flycatcher (Ficedula albicollis), the great tit (Parus major) and the blue tit (P. caeruleus). I studied social information use on two time scales: social information gathered just before a breeding attempt, and social information gathered already during the previous breeding season for the following year’s breeding attempt. I used experiments in which different white geometric symbols represented nest site choices of earlier settled tutors and empty nest boxes, and I observed the symbol choices of later-breeding individuals. The symbol approach eradicates bias from innate and learned preferences enabling strong inference. My results demonstrate that collared flycatchers use social information from both con- and heterospecific tutors in different situations in a flexible manner. Hence, social information use seems to be context-dependent. Furthermore, I show that great tits avoid choosing nest site characteristics which were associated with either con- or heterospecifics nests the previous year and prefer symbols which depicted an empty nest box the previous year, probably to avoid nest ectoparasites. I also show that in great tits the male has greater influence on nest site selection than previously assumed even though the female builds the nest. My thesis deepens our understanding about the complexity of social information use and highlights its significance in future ecological research. / Tiivistelmä Eläimet tarvitsevat informaatiota paikallisista olosuhteista tehdäkseen edullisia päätöksiä esimerkiksi siitä, missä lisääntyä. Informaatiota voidaan hankkia tutkimalla ympäristöä itse, mutta sitä voidaan hankkia myös muilta yksilöiltä. Jälkimmäistä kutsutaan sosiaaliseksi informaatioksi. Eläinten sosiaalisen informaation käyttö on saavuttanut viime aikoina paljon huomiota ekologisessa tutkimuksessa, koska se vaikuttaa tärkeisiin ekologisiin ilmiöihin, kuten eläinten levinneisyyteen ja resurssien käyttöön. Sosiaalinen informaation käyttö ei rajoitu vain nisäkkäisiin ja lintuihin, vaan sitä on havaittu myös esimerkiksi matelijoilla, kaloilla ja hyönteisillä. Sosiaalisen informaation käyttöä on tutkittu lähes yksinomaan lajien sisällä tai käyttäen ainoastaan yhtä sosiaalisen informaation lähdelajia. Yhteisötason vaikutuksia on pohdittu miltei pelkästään teoreettisissa tutkimuksissa. Tässä väitöskirjatyössä tutkin kokeellisesti sosiaalisen informaation käyttöä pesäpaikan valinnassa lajin sisällä ja lajien välillä kolopesivien lintujen yhteisössä sepelsiepolla (Ficedula albicollis), talitiaisella (Parus major) ja sinitiaisella (P. caeruleus). Otin tutkimuksissani huomioon kaksi aikatasoa: tutkin juuri ennen pesimisyritystä kerätyn sekä jo edellisen lisääntymiskauden aikana seuraavan vuoden pesintää varten hankitun sosiaalisen informaation käyttöä. Kokeissani käytin linnunpönttöihin kiinnitettyjä erilaisia valkoisia geometrisia symboleita, jotka edustivat aiemmin pesinnän aloittaneiden lintujen eli tuutoreiden pesäpaikanvalintoja. Seurasin tämän jälkeen myöhemmin pesimään saapuvien parien symbolivalintoja. Tulosteni perusteella sepelsiepot hankkivat sosiaalista informaatiota sekä lajitovereiltaan että tiaisilta joustavasti eri tilanteissa. Lisäksi osoitan, että talitiaiset välttävät valitsemasta pesäpaikkoja, jotka olivat asuttuina edellisenä vuonna, ja suosivat sellaisia pesäpaikkoja, joissa ei pesitty edellisenä vuonna - todennäköisesti välttääkseen kirppuja ja muita pesäloisia. Osoitan myös, että talitiaiskoirailla on suurempi vaikutus pesäpaikan valintaan kuin aikaisemmin on oletettu, vaikka naaraat rakentavat pesän. Väitöskirjatyöni syventää käsitystämme sosiaalisen informaation käytön monitahoisuudesta eläinkunnassa ja korostaa sen merkitystä ekologisessa tutkimuksessa.