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Investigation of speech processing in frequency regions where absolute thresholds are normal for hearing-impaired listeners / Etude du traitement de la parole dans des régions fréquentielles au sein desquelles les seuils absolus sont normaux pour des auditeurs malentendantsLéger, Agnès 30 November 2012 (has links)
Une perte auditive neurosensorielle est généralement associée à uneréduction de l’intelligibilité de la parole, et ce tout particulièrement dans le bruit.Les contributions respectives d’une réduction de l'audibilité et de déficitssupraliminaires sont encore débattues.L'objectif principal de cette thèse était d'évaluer l'effet spécifique desdéficits supraliminaires sur l’intelligibilité de la parole. L'effet de l'audibilité étaitcontrôlé en mesurant l’intelligibilité de signaux de parole sans signification filtrésdans les régions basses et moyennes fréquences au sein desquelles la détection desons purs était normale chez des auditeurs malentendants présentant par ailleursune perte auditive en hautes fréquences. Dans ces régions fréquentielles oùl’audibilité est supposée normale, des déficits d'intelligibilité de la parole légers àsévères ont été observés dans le silence comme dans le bruit chez les auditeursmalentendants. Les déficits étaient similaires dans les bruits masquantstationnaires et fluctuants. Ces résultats démontrent l’influence des déficitsauditifs supraliminaires sur l’intelligibilité de la parole.Le second objectif de cette thèse était d'étudier l'origine de ces déficitssupraliminaires. Les résultats indiquent qu’une réduction de la sélectivitéfréquentielle cochléaire ne peut pas expliquer entièrement les déficitsd’intelligibilité de la parole des auditeurs malentendants. L'influence de lasensibilité à la structure temporelle fine reste incertaine / Speech intelligibility is reduced for listeners with sensorineural hearingloss, especially for speech in noise. The extent to which this reduction is due toreduced audibility or to supra-threshold deficits is still debated.The main goal of this PhD work was to investigate the specific influenceof supra-threshold deficits on speech intelligibility. The effect of audibility wascontrolled for by measuring speech intelligibility for hearing-impaired listenersusing nonsense speech signals filtered in low- and mid-frequency regions wherepure-tone sensitivity was normal. Hearing-impaired listeners with hearing loss inhigh-frequency regions showed mild to severe intelligibility deficits for speechboth in quiet and in noise in these frequency regions of normal audibility. Similardeficits were obtained for speech in steady and fluctuating masking noises. Thisprovides additional evidence that speech intelligibility may be strongly influencedby supra-threshold auditory deficits.The second aim of this PhD work was to investigate the origin of thesesupra-threshold deficits. Results showed that reduced frequency selectivity cannotentirely explain the speech intelligibility deficits of the hearing-impaired listeners.The influence of temporal fine structure sensitivity remained unclear
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Structure and Ozone Decomposition Reactivity of Supported Manganese Oxide CatalystsRadhakrishnan, Rakesh 26 January 2001 (has links)
Manganese oxide catalysts supported on Al₂O₃, ZrO₂, TiO₂ and SiO₂ supports were used to study the effect of support on ozone decomposition kinetics. X-ray diffraction (XRD), in-situ laser Raman spectroscopy, temperature programmed oxygen desorption, surface area measurements, extended and near edge x-ray absorption fine structure (EXAFS and NEXAFS) showed that the manganese oxide was highly dispersed on the surface of the supports. EXAFS spectra suggest that the manganese active centers on all of the surfaces were surrounded by five oxygen atoms. These metal centers were of a mononuclear type for the Al₂O₃ supported catalyst and multinuclear for the other supports. NEXAFS spectra for the catalysts showed a chemical shift to lower energy and an intensity change in the L-edge features which followed the trend Al₂O₃ > ZrO₂ > TiO₂ > SiO₂. The trends provided insights into the positive role of available empty electronic states required in the reduction step of a redox reaction.
The catalysts were tested for their ozone decomposition reactivity and reaction rates had a fractional order dependency (n < 1) with ozone partial pressure. The apparent activation energies for the reaction was low (3-15 kJ/mol). The support influenced the desorption step (a reduction step) and this effect manifested itself in the pre-exponential factor of the rate constant for desorption. Trends for this pre-exponential factor correlated with trends in NEXAFS features and reflected the ease of electron donation from the adsorbed species to the active center. / Ph. D.
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Structure Sensitivity in the Subnanometer Regime on Pt and Pd Supported CatalystsKuo, Chun-Te 29 October 2020 (has links)
Single-atom and cluster catalysts have been receiving significant interest due to not only their capability to approach the limit of atom efficiency but also to explore fundamentally unique properties. Supported Pt-group single atoms and clusters catalysts in the subnanometer size regime maximize the metal utilization and were reported to have extraordinary activities and/or selectivities compared with nanoparticles for various reactions including hydrogenation reactions.
However, the relationship between metal nuclearity, electronic and their unique catalytic properties are still unclear. Thus, it is crucial to establish their relations for better future catalyst design.
Ethylene hydrogenation and acetylene hydrogenation are two important probe reactions with the simplest alkene and alkyne, and they have been broadly studied as the benchmark reactions on the various catalyst systems. However, the catalytic properties and reaction mechanism of those hydrogenation reactions for metal nuclearitiy in the subnanometer regime is still not well understood. In this study, we applied different characterization techniques including x-ray absorption fine structure (XAFS), X-ray diffraction (XRD), X-ray photoelectron spectroscopy(XPS), diffuse reflectance infrared spectroscopy (DRIFTS), calorimetry and high-resolution scanning transmission electron microscopy (STEM) to investigate the structure of Pt/TiO2 and Pd/COF single-atom catalysts and tested their catalytic properties for hydrogenation reactions.
In order to develop such relations, we varied the nuclearity of Pt supported on TiO2 from single atoms to subnanometer clusters to larger nanoparticles. For acetylene hydrogenation, Pt in the subnanometer size regime exhibits remarkably high selectivity to ethylene compared to its nanoparticle counterparts. The high selectivity is resulted from the decreased electron density on Pt and destabilization of C2H4, which were rationalized by X-ray photoelectron spectroscopy and calorimetry results. On the other hand, the activity of H2 activation and acetylene hydrogenation decreased as Pt nuclearity decreased. Therefore, our results show there's a trade-off between activity and selectivity for acetylene hydrogenation.
Additionally, the kinetics measurements of ethylene hydrogenation and acetylene hydrogenation were performed on Pt/TiO2 catalysts, and they found to be structure sensitive for both reactions, which the reaction orders and activation energy changes as particles size change. The activity of ethylene hydrogenation decreases, and activation energy increase from 43 to 86 kJ/mol, as Pt nuclearity decreased from an average size of 2.1 nm to 0.7 nm and single atoms. The reaction orders in hydrocarbons (ethylene and acetylene) were less negative on subnanometer clusters and single atoms in contract to nanoparticles. The results imply that hydrocarbons, ethylene and acetylene species, do not poison the catalyst on Pt in the subnanometer size regime, and hydrogen activation turn to competitive adsorption path with surface hydrocarbons species.
Moreover, single atom Pd supported on imine-linked covalent organic framework was synthesized, characterized by a various of techniques including X-ray photoelectron spectroscopy (XPS), X-ray absorption spectroscopy (XAS), and diffuse reflectance infrared Fourier transform spectroscopy (DRIFTS) of adsorbed CO, and evaluated its catalytic properties for ethylene hydrogenation. The XAS results show that Pd atoms are isolated and stabilized by two covalent Pd–N and Pd-Cl bonds. DRIFTS of CO adsorption shows a sharp symmetrical peak at 2130 cm−1. The Pd single atoms are active for hydrogenation of ethylene to ethane at room temperature. The reaction orders in C2H4 and H2 were 0.0 and 0.5 suggesting that ethylene adsorption is not limiting while hydrogen forms on Pd through dissociative adsorption. / Doctor of Philosophy / More than 90% of chemicals come from petroleum and natural gas, and most of these chemicals are composed of alkene and alkyne, hydrocarbons containing at least one double bonds or triple bonds, such as ethylene, propylene, butenes, butadiene. These small hydrocarbon molecules with carbon-carbon bonds (double or triple) are in great interest of fundamental study and serve as probe units for understanding more complex reactions. Catalysts are materials that can be added to a chemical reaction to accelerate the specific rate of reactions. Most catalysts are supported noble metals thus increase the utilization of metal atoms are important. Decreasing the particle size to increase the metal dispersion is the simple approach to maximize the atom efficiency. However, it is not well understood how do the electronic property and catalytic performance change as particle size decrease. In this work, we focus on the structure sensitivity on catalysts in sub-nanometer region. Supported Pt and Pd catalysts, known to be highly active for hydrogenation reactions, are studied on hydrogenation reactions of acetylene and ethylene, the simplest alkene and alkyne. The Pd and Pt catalysts with particle sizes ranging from single atoms, sub-nanometer clusters and nanoparticles were prepared, characterized and tested for hydrogenation reactions mentioned above. The results show that significantly change in electronic property, catalytic performance (activity and/or selectivity) and reaction kinetics of the catalysts as the particle size changing from nanometer to sub-nanometer region. The fundamental understanding of structure sensitivity on catalysts and their relations between surface structure, electronic property and catalytic performance presented in this work can help the researchers design better catalysts for future work.
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Soil Organic Nitrogen - Investigation of Soil Amino Acids and Proteinaceous CompoundsMa, Li 01 May 2015 (has links)
Soil carbon (C) and nitrogen (N) are predominantly in organic form. Proteins/ peptides, as an important organic form of N, constitute a substantial part of soil organic matter. On one hand, proteins/peptides are an important N source for plants and microorganisms, particularly in soils where inorganic N is limited. On the other hand, their stabilization in soils by forming organo-mineral associates or macromolecule complex reduces the C loss as CO2 into the atmosphere. Therefore, studies on the turnover, abundance, composition, and stability of proteins/peptides are of crucial importance to agricultural productivity and environmental sustainability. In the first part of this study, the bioavailability and distribution of amino acids, (building block of proteins/peptides), were investigated, in soils across the North-South and West-East transects of continental United States. The second part of this study aimed to understand the variations of organic C speciation in soils of continental United States. Previous investigations of the interactions between soil minerals and proteins/peptides were mostly limited to batch sorption experiments in labs, seldom of which gave the details at the molecular scales. Therefore, in the third part of this study, the molecular orientation of self-assembled oligopeptides on mineral surfaces was investigated by employing synchrotron based polarization-dependent Near Edge X-ray Adsorption Fine Structure Spectroscopy (NEXAFS) techniques. Specific aims of this study were: 1) to assess potentially bioavailable pool of proteinaceous compounds and the immediately bioavailable pool of free amino acids in surface and subsurface soils of various ecosystems; 2) to evaluate the relationship between environmental factors and levels/composition of the two pools; 3) to investigate the organic C speciation in soils of various land use; and 4) to understand molecular level surface organization of small peptides on mineral surfaces.
The levels of free amino acids and hydrolysable amino acids which represent the potentially bioavailable pool of proteinaceous compounds in A-horizon soils were significantly high than in C-horizon soils due to the accumulation of organic matter in surface. On average, free amino acids accounted for less than 4 % of hydrolysable amino acids which represent the total proteinaceous compounds in soils. The composition of free amino acids was significantly different between surface soil and subsurface soil and was significantly influenced by mean annual temperature and precipitation. A relatively uniform composition of hydrolysable amino acids was observed irrespective of a wide range of land use. Significant variations were observed for the levels of free and hydrolysable amino acids along mean annual temperature and precipitation gradients, as well as among vegetation types of continental USA, suggesting levels of free and hydrolysable amino acids were associated with the above-ground biomass and root distribution. Organic C speciation investigation revealed the presence of carboxylic-C (38%), aliphatic-C (~ 22%), aromatic-C (~ 18%), O/N-alkyl-C (~ 16%), and phenolic-C (< 6%). Factors such as temperature and vegetation cover were revealed in this study to account for the fluctuations of the proportions of aromatic-C and phenolic-C, in particular. Phenolic-C may serve as a good indicator for the effect of temperature or vegetation on the composition of SOC. The average composition of soil organic C, over the continental scale, was relatively uniform over various soil ecosystems and between two soil horizons irrespective of surface organic C content. Polarization dependent NEXAFS analysis showed the oligopeptides tend to orient on mineral surface with an average tilt angle of 40 ° between the molecular chain and the mineral surface. / Ph. D.
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Structural and Kinetic Study of Low-temperature Oxidation Reactions on Noble Metal Single Atoms and Subnanometer ClustersLu, Yubing 23 April 2019 (has links)
Supported noble metal catalysts make the best utilization of noble metal atoms. Recent advances in nanotechnology have brought many attentions into the rational design of catalysts in the nanometer and subnanometer region. Recent studies showed that catalysts in the subnanometer regime could have extraordinary activity and selectivity. However, the structural performance relationships behind their unique catalytic performances are still unclear. To understand the effect of particle size and shape of noble metals, it is essential to understand the fundamental reaction mechanism. Single atoms catalysts and subnanometer clusters provide a unique opportunity for designing heterogeneous catalysts because of their unique geometric and electronic properties.
CO oxidation is one of the important probe reactions. However, the reaction mechanism of noble single atoms is still unclear. Additionally, there is no agreement on whether the activity of supported single atoms is higher or lower than supported nanoparticles. In this study, we applied different operando techniques including x-ray absorption fine structure (XAFS), diffuse reflectance infrared spectroscopy (DRIFTS), with other characterization techniques including calorimetry and high-resolution scanning transmission electron microscopy (STEM) to investigate the active and stable structure of Ir/MgAl2O4 and Pt/CeO2 single-atom catalysts during CO oxidation. With all these characterization techniques, we also performed a kinetic study and first principle calculations to understand the reaction mechanism of single atoms for CO oxidation. For Ir single atoms catalysts, our results indicate that instead of poisoning by CO on Ir nanoparticles, Ir single atoms could adsorb more than one ligand, and the Ir(CO)(O) structure was identified as the most stable structure under reaction condition. Though one CO was strongly adsorbed during the entire reaction cycle, another CO could react with the surface adsorbed O* through an Eley-Rideal reaction mechanism. Ir single atoms also provide an interfacial site for the facile O2 activation between Ir and Al with a low barrier, and therefore O2 activation step is feasible even at room temperature. For Pt single-atom catalysts, our results showed that Pt(O)3(CO) structure is stable in O2 and N2 at 150 °C. However, when dosing CO at 150 °C, one surface O* in Pt(O)3(CO) could react with CO to form CO2, and the reacted O* can be refilled when flowing O2 again at 150 °C. This suggests that an adsorbed CO is present in the entire reaction cycle as a ligand, and another gas phase CO could react with surface O* to form CO2 during low-temperature CO oxidation.
Supported single atoms synthesized with conventional methods usually consist of a mixture of single atoms and nanoparticles. It is important to quantify the surface site fraction of single atoms and nanoparticles when studying catalytic performances. Because of the unique reaction mechanism of Ir single atoms and Ir nanoparticles, we showed that kinetic measurements could be applied as a simple and direct method of quantifying surface site fractions. Our kinetic methods could also potentially be applied to quantifying other surface species when their kinetic behaviors are significantly different. We also benchmarked other in-situ and ex-situ methods of quantifying surface site fraction of single atoms and nanoparticles.
To bridge the gap between single atoms and nanoparticles and have a better understanding of the effect of nuclearity on CO oxidation, we also studied supported Ir subnanometer clusters with the average size less than 0.7 nm (< 13 atoms) prepared by both inorganic precursor and organometallic complex Ir4(CO)12. Low-temperature CO adsorption indicates that CO and O2/O could co-adsorb on Ir subnanometer clusters, however on larger nanoparticle the particle surface is covered by CO only. Additional co-adsorption of CO and O2 was studied by CO and O2 calorimetry at room temperature. CO oxidation results showed that Ir subnanometer clusters are more active than Ir single atoms and Ir nanoparticles at all conditions, and this could be explained by the competitive adsorption of CO and O2 on subnanometer clusters. / Doctor of Philosophy / CO oxidation is one of the important reactions in catalytic converters. Three-way catalysts, typically supported noble metals, are very efficient at high temperature but could be poisoned by CO at cold start. Better designed catalysts are required to improve the performance of the catalytic converter to lower the emissions of gasoline engines. To reach this goal, more efficient use of the noble metal is required. Single-atom catalysts consist of isolated noble metal atoms supported on different supports, which provide the best utilization of noble metal atoms and provides a new opportunity for a better design of heterogeneous catalysts. The unique electronic and geometric properties of metal single atoms catalysts could lead to a better activity and selectivity. Subnanometer clusters have also been shown to have unique electronic properties. With a better understanding of the structure of supported single atoms and subnanometer clusters, their catalytic performance can be optimized for better catalysts in the catalytic converter and other applications. In this work, we applied in-situ and operando characterization, kinetic studies and first principle calculations aiming to understand the active and stable structure of noble metal single atoms and vi subnanometer clusters under reaction condition, and their reaction mechanisms during CO oxidations. For MgAl₂O₄ supported Ir single atoms, our results suggest that CO could be co-adsorbed with O₂/O under reaction conditions. These multiple ligands adsorption leads to a unique reaction mechanism during CO oxidation. Though one CO was adsorbed during the whole reaction cycle, another gas phase CO could react with the O* species co-adsorbed with CO through an Eley-Rideal mechanism. This suggests that Ir single atoms are no longer poisoned by CO, and on the other hand the O₂ can be activated on an interfacial site with a low reaction barrier. Ir subnanometer clusters showed higher activities than Ir single atoms and nanoparticles. In-situ IR and high energy resolution fluorescence detected – X-ray absorption near edge spectroscopy (HERFD-XANES) showed that CO could co-adsorb with O₂ at room temperature, and this competitive adsorption could explain the high activity during CO oxidation. Supported Ir single atoms and subnanometer clusters are not poisoned by CO and O₂ could be co-adsorbed, this could be potentially applied to solve the poisoning of catalyst in the catalytic converter at cold start temperature. We also performed kinetic study on CeO₂ supported Pt single atoms. Similar behavior was observed, and we showed that the CO and O co-adsorbed complex is stable in O₂ and N₂, but could react in CO. With the understanding of the active structure of noble metal single atoms and the origin of activities, better-designed catalysts can be synthesized to improve the activity and selectivity of low-temperature oxidation reactions.
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Characterization of Self-Assembled Monolayers of Oligo(phenyleneethynylene) Derivatives on GoldWatcharinyanon, Somsakul January 2007 (has links)
<p>Oligo(phenyleneethynylene) (OPE) molecules are a class of fully conjugated aromatic molecules, that attract attention for their application as “molecular wires” in molecular electronic devices. In this thesis work, self-assembled monolayers (SAMs) formed from a variety of OPE derivatives have been studied. The chemical properties, structure, and packing density of the SAMs have been characterized utilizing techniques such as high-resolution X-ray photoemission spectroscopy (HRXPS), near-edge X-ray absorption fine structure spectroscopy (NEXAFS), Infrared reflection absorption spectroscopy (IRRAS), contact angle measurements, and atomic force microscopy (AFM).</p><p>In a first study, three OPE-derivatives, with benzene, naphthalene and anthracene, respectively, inserted into the backbone, and an acetyl-protected thiophenol binding group were found to form SAMs on Au(111) substrates with lower molecular surface densities and larger molecular inclination as the lateral π-system increases.</p><p>In a second study, porphyrin was introduced as the end group to a wire-like molecule such as OPE. The purpose was to obtain well-organized and functionalized surfaces with optical and redox properties. Three porphyrin-functionalized OPEs had different binding groups, an acetyl-protected thiophenol, a benzylic thiol, and a trimethylsilylethynylene group, and were found to form SAMs on gold surfaces with difference in structure and degree of order. The molecules with the acetyl-protected thiophenol binding group were found to form a high quality SAM compared to the other two. This SAM exhibits a well-ordered and densely packed layer.</p><p>This study gives rise to a better understanding of SAM formation of OPE derivatives, and will form a base for further investigations of charge transport properties of these molecular films, which is of interest for applications in molecular electronic devices.</p>
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Structure of and phase transformations in bulk amorphous (GaSb)â†1â†-â†x(Geâ†2)â†xSapelkin, Andrei V. January 1997 (has links)
No description available.
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O operador de Wigner aplicado a colisões de mudança de estrutura fina entre átomos alcalinos no regime frio / The Wigner operator applied to fine-structure collisions between alkaline cold atomsBraga, Helena Carolina 22 March 2002 (has links)
Neste trabalho abordamos os processos de perdas colisionais por mudança de estrutura fina e por escape radiativo. Estes processos são importantes por serem os principais fatores limitantes da densidade e da permanência de átomos confinados em armadilhas magneto-ópticas. A utilização do formalismo de Wigner nos possibilitou tratar a dinâmica dos graus de liberdade internos do sistema de forma puramente quântica, enquanto tratamos os graus de liberdade translacionais de maneira semiclássica. Com este formalismo deduzimos equações inéditas para uma colisão unidimensional e desenvolvemos um algoritmo, também inédito, para a resolução numérica de tais equações. / In this work we study the collision loss processes caused by fine-structure change and radiative escape. These processes are important because they limit the density and the confinement time of atoms in magneto-optical traps. The use of the Wigner-function formalism allows us to treat the internal degrees of freedom purely quantum mechanically, while treating the dynamics of the external degrees of freedom quasi-classically. This dissertation employs this formalism to derive for the first time, quasi-classical equations describing one-dimensional cold collisions, including dissipation due to spontaneous emission, and an algorithm, also for the first time, to solve numerically the mentioned set of coupled equations.
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Modulação da degradação enzimática de galactomanano por sua própria estrutura fina / Modulation of enzymatic degradation of galactomannan by its fine structureEncarnação, Thalita Beatriz Carrara da 26 November 2012 (has links)
Sementes de Sesbania virgata (Cav.) Pers. acumulam suas reservas de carbono no endosperma na forma de um polissacarídeo de parede celular, o galactomanano. Os galactomananos são polissacarídeos constituídos de uma cadeia principal de resíduos de D-manose ligadas β-1,4, ramificada por resíduos de D-galactose α-1,6 ligados. A mobilização deste ocorre após a germinação e envolve três enzimas hidrolíticas (α-galactosidase, endo-β-mananase e exo-β-manosidase). A α-galactosidase é a primeira enzima atuar sobre o galactomanano hidrolisando as ligações α-1,6 das galactoses ramificadas a cadeia principal de manano (ligados β-1,4), permitindo a ação da endo-β-mananase, que hidrolisará o polissacarídeo a oligossacarídeos, onde a β-manosidase atuará (ligações β-1,4), transformando oligossacarídeos a monossacarídeos a serem utilizados no desenvolvimento do embrião. Buscando a compreensão das características da α-galactosidase e modo de ação sobre o galactomanano, procedeu-se com a purificação, em três etapas,e caracterização bioquímica (pH ótimo, temperatura ótima e aspectos cinéticos) da α-galactosidase de sementes de Sesbania virgata (Cav.) Pers. Além disso, visando evidenciar a modulação da enzima endo-β-mananase pela distribuição de ramificações de galactose no galactomanano (estrutura fina do galactomanano), procedeu-se com hidrólises enzimáticas do galactomanano de Sesbania virgata (Cav.) Pers. utilizando a enzima endo-β-mananase de Aspergillus niger (Megazyme®) somente ou em conjunto com a α-galactosidase semipurificada de Sesbania virgata (Cav.) Pers. (Capítulo 1) ou com a α-galactosidase comercial de Cyamopsis tetragonoloba (Megazyme®), seguido de análise dos oligossacarídeos por HPAEC-PAD (High Performance Anion Exchange Chromatography with Pulsed Amperometric Detection). Também procedeu-se com hidrólises enzimáticas de galactomananos de 6 espécies com razão manose:galactose variando de 1:1 a 150:1 com endo-β-mananase de Aspergillus niger (Megazyme®) e análise dos oligossacarídeos produzidos por HPAEC-PAD. A α-galactosidase semipurificada possui, aproximadamente, 42 kDa de peso molecular em condições desnaturantes e, aproximadamente 72 kDa de peso molecular na forma nativa, sugerindo que a enzima assuma estrutura quartenária. A temperatura ótima apresentada se encontra na faixa de 50°C a 55°C, pH ótimo na faixa de 4,4 a 5,4, Km= 1,8276 mM e a velocidade máxima de 0,5024 μmolGal.min-1.mgprot-1. A espectrometria de massas gerou os fragmentos: ALADYV-HSK-RMPGSLGHEE-QDAK-TT-GDIEDNWNSM-TSIADS NDKW-ASYAGPGGWN-DPDMLEVGNG-GMTTEEYR-AP-LLVGCDIR-VAVIL-WNR, estando a proteína referente a esta sequência relacionada à mobilização de reserva. Durante a purificação e sequenciamento interno da α-galactosidase e demais proteínas foram detectadas isoformas da α-galactosidase de pesos moleculares variados (42 kDa a 20 kDa). Sugere-se que estas isoformas encontradas inicialmente na purificação estejam relacionadas com outras funções da α-galactosidase, enquanto as isoformas encontradas após todas as etapas de purificação e identificação por espectrometria de massas estejam relacionadas com ativação e adaptação da α-galactosidase durante todo o processo de mobilização de reservas. Os dados gerados das comparações dos oligossacarídeos produzidos em cada hidrólise sugerem que as ramificações do galactomanano podem modular o reconhecimento de sítios de clivagem pela endo-β-mananase: (1) existe a produção de oligossacarídeos limites de digestão F1, F2 e F3 após hidrólise do galactomanano com endo-β-mananase, como demonstrado para xiloglucanos; (2) os oligossacarídeos F1 possuem proporções distintas quando da hidrólise do galactomanano com endo-β-mananase em diferentes concentrações (ExP I e EXP IV), evidenciando preferência por sítios com menor grau de galactosilação; (3) a presença da α-galactosidase diminui a produção dos oligossacarídeos F2 e F3, mostrando que estes não possuem resistência intrínseca a hidrólise e que a reação atinge o equilíbrio mesmo quando ainda existem sítios de clivagem ainda disponíveis (EXP III); (4) polissacarídeos com estruturas diferentes, razão manose:galactose variando entre 150:1 a 1:1, são digeridos em diferentes taxas de hidrólise pela mesma enzima, evidenciando que a ramificação com galactose dificulta a ação da endo-β-mananase. Dessa forma, sugere-se que a estrutura do polissacarídeo galactomanano também contenha, pelo menos, parte da informação requerida para seu próprio metabolismo, código para a sua degradação, estando esta informação contida na distribuição das ramificações com resíduos de D-galactose. Sendo assim, sugere-se que as diferentes isoformas da α-galactosidase relacionadas à degradação da reserva de galactomanano de sementes de Sesbania virgata (Cav.) Pers. seriam produto da ação proteolítica da própria enzima a fim de melhorar a afinidade da α-galactosidase ao substrato durante o processo de mobilização de reserva. O aumento da afinidade da α-galactosidase ao substrato durante todo o processo de mobilização garantiria a liberação das ramificações com galactose de forma contínua, permitindo e aumentando a eficiência da ação da enzima endo-β-mananase aos sítios de clivagem, garantindo a degradação do polissacarídeo a oligossacarídeos de forma regulada, passível de bloqueio, pelo acúmulo de oligossacarídeos e galactose livre que inibem a ação das enzimas endo-β-mananase e α-galactosidase, respectivamente, e dificultando a ação de microorganismos, propiciando ao embrião a maior quantidade de açúcares para o seu desenvolvimento, aumentando as chances de sucesso no estabelecimento da plântula / The seeds of Sesbania virgata (Cav.) Pers. have an endosperm which accumulates galactomannan as a storage polysaccharide in the cell walls. Galactomannans are composed of a linear backbone of β-(1,4)-linked D-mannose residues with D-galactose α-(1,6)-linkages substitutions. The galactomannans are hydrolysed after protrusion of the radicle. This process is perfomed by three enzymes (α-galactosidase, endo-β-mannanase and exo-β-manosidase). The α-galactosidase is the first enzyme to cleave the polysaccharides, removing the D-galactose residues, allowing the performance of the endo-β-mannanase, which hydrolyses the mannan backbone to mannan oligosaccharides. The last part of the process includes exo-β-manoside, that cleaves the mannan oligosaccharides to mannose residues, which could be used by the embryo during growth. Aiming at understanding the function of ?-galactosidase in the process of galatomanannan degradation, we studied its mode of action on mannans and galactomannans. The α-galactosidase of Sesbania virgata (Cav.) Pers. was purified and characterized (pH and temperature optimum and the enzyme kinetics). We found that the semipurified α-galactosidase molecular weight was 42kDa at denaturating conditions, but in native conditions was 72kDa, suggesting that the enzyme has a quaternary structure. The enzyme optimum pH was between 4,4-5,4, optimum temperature between 50°C-55°C, Km= 1,8276 mM and Vmáx= 0,5024 μmolGal.min-1.mgprot-1. Mass spectrometry measures resulted the following fragments: ALADYV-HSK-RMPGSLGHEE-QDAK-TT-GDIEDNWNSMTSIADS-NDKW-ASYAGPGGWN-DPDMLEVGNG-GMTTEEYR-AP-LLVGCDIR-VAVIL-WNR, being the protein from this sequence related with storage mobilization. Possible α-galactosidase isoforms were detected during the purification, suggesting other functions for the enzyme. The α-galactosidase isoforms detected after all purification steps and with measured mass spectrometry (from 42kDa to 20kDa) should be related to the storage mobilization. We suggest that the α-galactosidase isoforms in Sesbania virgata (Cav.) Pers. seeds represents products of the enzyme self-digestion, this process being correlated with the enzyme/polysaccharide affinity and at last, correlated to the galactomannan mobilization. An extract semipurified from Sesbania virgata (Cav.) Pers. and enriched with α-galactosidase activity, was used along with endo-β-mannanase from Aspergillus niger (Megazyme®) or both endo-β-mannanase and α-galactosidase (semipurified from Sesbania virgata seeds - Chapter 1- or commercial enzyme from Cyamopsis tetragonoloba - Megazyme®) were used to study the fine structure of galactomannans. Hydrolysis of galactomannans from six species with different mannose:galactose (1:1 to 150:1) ratio were performed with endo-β-mananase from Aspergillus niger. The oligosaccharides from all hydrolysis were analyzed by HPAEC-PAD (High Performance Anion Exchange Chromatography with Pulsed Amperometric Detection). The hydrolysis fragments data (HPAEC-PAD) suggest that the side-chains of the polysaccharides can modulate the hydrolytic sites recognition on the galactomannan by the endo-β-mannanase. This conclusion is supported by: (1) the presence of limited digest oligosaccharides F1 and dimmers (F2) and trimers (F3) of the F1 oligosaccharides; (2) the presence of different F1 oligosaccharides proportions after hydrolysis with endo-β-mannanase at different concentrations, showing preference on less-branched hydrolytic sites; (3) the α-galactosidase digestion avoided the accumulation of oligosaccharides F2 and F3, showing that these oligosaccharides do not present intrinsic resistance to hydrolysis and that the reaction reaches an equilibrium even when sites of hydrolysis are still available; (4) polymers with different fine structure (ratio mannose:galactose 1:1 to 150:1) were hydrolysed at different rates by the endo-β-mannanase, showing that galactose branching interferes on the enzyme action. Considering that, the branching pattern of the polysaccharide seems to have direct influence on the interaction of the enzyme with substrate; we suggest that the structure of the galactomannan holds part of information required for its own degradation. The higher enzyme x substrate affinity, ensure the galactose branches digestion, improving the endo-β-mannanase action, ensuring the degradation of the polysaccharides to oligosaccharides. This highly regulated degradation process prevents microorganisms predation and increases the plantlet establishement
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Characterization of Self-Assembled Monolayers of Oligo(phenyleneethynylene) Derivatives on GoldWatcharinyanon, Somsakul January 2007 (has links)
Oligo(phenyleneethynylene) (OPE) molecules are a class of fully conjugated aromatic molecules, that attract attention for their application as “molecular wires” in molecular electronic devices. In this thesis work, self-assembled monolayers (SAMs) formed from a variety of OPE derivatives have been studied. The chemical properties, structure, and packing density of the SAMs have been characterized utilizing techniques such as high-resolution X-ray photoemission spectroscopy (HRXPS), near-edge X-ray absorption fine structure spectroscopy (NEXAFS), Infrared reflection absorption spectroscopy (IRRAS), contact angle measurements, and atomic force microscopy (AFM). In a first study, three OPE-derivatives, with benzene, naphthalene and anthracene, respectively, inserted into the backbone, and an acetyl-protected thiophenol binding group were found to form SAMs on Au(111) substrates with lower molecular surface densities and larger molecular inclination as the lateral π-system increases. In a second study, porphyrin was introduced as the end group to a wire-like molecule such as OPE. The purpose was to obtain well-organized and functionalized surfaces with optical and redox properties. Three porphyrin-functionalized OPEs had different binding groups, an acetyl-protected thiophenol, a benzylic thiol, and a trimethylsilylethynylene group, and were found to form SAMs on gold surfaces with difference in structure and degree of order. The molecules with the acetyl-protected thiophenol binding group were found to form a high quality SAM compared to the other two. This SAM exhibits a well-ordered and densely packed layer. This study gives rise to a better understanding of SAM formation of OPE derivatives, and will form a base for further investigations of charge transport properties of these molecular films, which is of interest for applications in molecular electronic devices.
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