Our objective is to report mortality rates for ponderosa pine trees in Oregon ten to eleven years after removing a fire-scarred partial cross-section from them, and five years after an initial survey of post-sampling mortality. We surveyed 138 live trees from which we removed fire-scarred partial crosssections in 1994/95 and 387 similarly sized, unsampled neighbor trees of the same species. These trees were from 78 plots distributed over about 5,000 ha at two sites in northeastern Oregon. The annual mortality rate for sectioned trees from 1994/95 to 2005 was 3.6% compared to 2.1% for the neighbor trees. However, many of the trees that died between 2000 and 2005 were likely killed by two prescribed fires at one of the sites. Excluding all trees in the plots burned by these fires (regardless of whether they died or not), the annual mortality rate for sectioned trees was 1.4% (identical to the rate from 1994/95 to 2000) compared to 1.0% for neighbor trees. During these fires, a greater proportion of sectioned trees died than did catfaced neighbor trees (80% versus 64%) but the difference was not significant.

The occurrence of wildfire is influenced by a suite of factors ranging from "top-down" influences (e. g., climate) to "bottom-up" localized influences (e. g., ignitions, fuels, and land use). We carried out the first broad-scale assessment of wildland fire patterns in northern Mexico to assess the relative influence of top-down and bottom-up drivers of fire in a region where frequent fire regimes continued well into the 20th century. Using a network of 67 sites, we assessed (1) fire synchrony and the scales at which synchrony is evident, (2) climate drivers of fire, and (3) asynchrony in fire regime changes. We found high fire synchrony across northern Mexico between 1750 and 2008, with synchrony highest at distances < 400 km. Climate oscillations, especially El Nino-Southern Oscillation, were important drivers of fire synchrony. However, bottom-up factors modified fire occurrence at smaller spatial scales, with variable local influence on the timing of abrupt, unusually long fire-free periods starting between 1887 and 1979 CE. Thirty sites lacked these fire-free periods. In contrast to the neighboring southwestern United States, many ecosystems in northern Mexico maintain frequent fire regimes and intact fire-climate relationships that are useful in understanding climate influences on disturbance across scales of space and time.

Historical ecology is an emerging and interdisciplinary field that seeks to explain the changes in ecosystems over time through a synthesis of information derived from human records and biological data. The methods in historical ecology cover a wide range of temporal and spatial scales. However, methods for the more recent past (about 200 years) are largely limited to the human archive and dendrochronological evidence which can be subject to human bias, limited in spatial extent or not appropriate for non-forested systems. There is a need to explore new methods by which biological data can be used to understand historic vegetation and disturbance regimes over the recent past especially in arid ecosystem types. Soil phytolith analysis has the potential to provide much needed information regarding historical conditions in both areas. Phytoliths are structures formed in plants through deposition and accumulation of silica within and around cell walls that are released from plants and preserved in sediments long after death and decay of plant material. The City of Rocks National Reserve in southern Idaho was an excellent place to develop new methods in historical ecology because the human records of historic environmental conditions were so rich. There were two overarching and interconnected objectives for this dissertation research. The first was to reconstruct an ecological history of the City of Rocks National Reserve from the period of overland emigration to present. The second objective was to explore the utility of soil phytolith analysis for inferring vegetation and disturbance regime change over the recent past by testing its sensitivity to record known changes. I employed modern analogue studies, a multi-core approach and detailed core analysis to test for known changes through analysis of extraction weights, relative abundance of phytolith assemblages, microscopic charcoal and burned (darkened) phytoliths. My results showed that this combination of history and soil phytolith analysis would be a useful approach for inferring vegetation changes (e.g. increases in introduced grasses) and disturbances (e.g. fire) in ecological histories.

Emerald Pond (26° 32' 12" N, 77° 06' 32" W) is a vertical-walled solution hole in the pine rocklands of Great Abaco Island, The Bahamas. In 2006, Sally Horn, Ken Orvis, and students recovered an 8.7 m-long sediment core from the center of the pond using a Colinvaux-Vohnout locking piston corer. AMS radiocarbon dates on macrofossils are in stratigraphic order and indicate that the sequence extends to ca. 8400 cal yr BP. Basal deposits consist of aeolian sands topped by a soil and then pond sediment, suggesting that the site began as a sheltered, dry hole during a Late Pleistocene low sea level stand, and became moister as climate changed and rising sea level pushed up the freshwater table. The limestone rockland surrounding the site is presently dominated by Bahamian pine (Pinus caribaea Morelet var. bahamensis (Griseb.) W.H. Barrett & Golfari) with an understory of hardwoods and several palm species. Pollen analyses on the sediments of Emerald Pond indicate significant environmental change at the site. Pines and palms have dominated for much of the record, with some variation in relative importance. Pine pollen shows a non-uniform, general increase over the record, with highest values reached in a section of the upper meter of the record that contains abundant microscopic charcoal that may be related to anthropogenic activities. Palm pollen is well represented in all but this upper section of the core. The shifts in pollen percentages in the upper meter of the core suggest a generally drier environment during the last two millennia at Emerald Pond.

The origin and classification of open and mosaic ecosystems, particularly in the tropics and subtropics, have led to controversy worldwide. This has affected biodiversity conservation and, in some cases, promoted the establishment of afforestation projects based on the assumption that open and mosaic ecosystems are degraded forests. Although this initiative can have benefits in terms of carbon storage and climate mitigation if carefully planned and managed, it can also cause biodiversity loss and degradation when afforestation takes place in areas that were previously open ecosystems, or where unsuitable species are used. Madagascar, a world biodiversity hotspot, is one of the countries targeted for the implementation of afforestation projects. The Central Highlands of Madagascar, dominated by grassland matrix with forest patches, is the main region targeted. The nature and origin of the landscape are hotly debated, however, and it is not clear whether these open ecosystems are ancient or anthropogenically derived. Understanding of landscape history is therefore required to identify and conserve ancient open ecosystems, and to distinguish them from areas that have been deforested by people. This research aims to reconstruct the vegetation history and environmental change in the Central Highlands of Madagascar during the Holocene using palaeoecological methods, in order to inform appropriate conservation and management plans. We provide new records of vegetation, hydrological change, fire and herbivory activities by using a multiproxy approach, which includes fossil pollen, stable carbon isotopes, diatoms, charcoal and coprophilous spores, that allows for a comprehensive investigation into the history and drivers of vegetation change. Sediment cores were collected from two sites, Tampoketsa-Ankazobe wetland and Lake Dangovavy, located in the eastern and western slopes of the highlands, respectively. Results indicated that the surrounding area of both sites was composed of mosaic ecosystems, comprising of forest patches of variable extent in a matrix of open grassland and ericoid shrubland vegetation, at least from the Early and Mid-Holocene to ca. 1000 cal years BP, driven mainly by climate variability and fire occurrence. In Tampoketsa-Ankazobe wetland (eastern slopes), the vegetation was characterised by a mosaic of ericoid shrubland and mid-elevation forest taxa, between ca. 11 200 and 8300 cal years BP, under warm/wet period and low fire occurrence. The vegetation in the area changed to a mosaic of ericoid shrubland with more dominance of high-elevation forest from ca. 8300 to 1000 cal years BP under a drier climate and consistent low fire occurrence. The abundance of shrubs and trees during those two periods were confirmed by the dominance of C3 plants as reflected by the stable carbon isotopes results, and coincided with low herbivory activities in the TampoketsaAnkazobe site from ca. 11 200 to 1000 cal years BP. In parallel, the pollen record from Lake Dangovavy (western slopes), between ca. 6200 and 5400 cal years BP, suggests a mosaic ecosystem, dominated by more C3 montane grass, ericoid shrubland and high elevation forest patches promoted by cool/dry climate with low fire occurrence and herbivory activities. Between ca. 5400 and 4200 cal years BP, vegetation in the area was dominated by a mosaic of ericoid shrubland and mid-elevation forest under a wetter period, moderate fire occurrence, and herbivory activities. This mosaic was controlled by climate, fire refugia and herbivory feedbacks. The vegetation changed into a forest-savanna mosaic with an abundance of grassland and pioneer/fire-resistant trees between ca. 4200 and 3000 cal years BP. The period was characterised by an initial increase of local fire followed by a regional drought event. This suggests that a threshold might have been reached, with a resulting shift in vegetation composition. Between ca. 3000 and 1000 cal years BP, reoccurrence of ericoid shrubland with woodland savanna taxa was recorded in the area. The vegetation was conditioned by variation of climate from wet (until ca. 2000 cal years BP) to dry period (ca. 2000–⁠1000 cal years BP) with moderate fire occurrence and herbivory activities. In addition, stable carbon isotope results show that between ca. 6200 to 1000 cal years BP, the site was characterised by C3 plants. During the last ca.1000 cal years BP, pollen records from both sites in the Central Highlands of Madagascar showed a shift to a more open landscape dominated by grassland. Trees and shrubland in the highlands experienced a massive decrease and this correlated with an abundance of C4 plants associated with reduced diversity. The shift of vegetation during this period was likely a result of a centennial severe drought period at ca. 950 cal years BP, as recorded in the literature and confirmed by the peak in aerophilous taxa in our diatom record. The drought was followed by a dramatic increase of fire occurrence and herbivory activities in the region, as recorded in the charcoal and spore records from both sites, indicating human activities at ca. 700 and 500 cal years BP for Lake Dangovavy and Tampoketsa-Ankazobe wetland, respectively. Though the vegetation at both sites in Central Highlands of Madagascar was very dynamic until ca. 1000 cal years BP, complex interactions between climate and fire allowed the forest and ericoid elements to persist, consistent with a heterogeneous mosaic landscape. This changed from 1000 years ago with the occurrence of a regional severe drought event followed by an increase in human activities leading to an increase of grass, a decline in forest and ericoid elements. Our findings suggest that although, the eastern and western slopes in Madagascar might have different vegetation histories over time as a response to the complex climatic-fire drivers at least until ca. 1000 cal years BP, they both: a) Contained ancient open ecosystems such as grasslands and/or ericoid shrubland, and a mosaic landscape which should be considered typical of the highland region. b) Experienced a loss of forest, woodland and mosaic elements, a trend that is consistent with the anthropogenic conversion of some forests to grasslands since ca. 1000 cal years BP. Such findings have implications in terms of conservation, fire management and afforestation projects in the Central Highlands, and provide additional knowledge that contributes to the understanding of its ecological processes and history prior to human arrival on the island. Indeed: 1) Ancient grasslands and ericoid shrubland need to be identified and conserved because of their antiquity and unique biodiversity. To date, there has been some focus on ancient grasslands, but the presence of ancient heathlands has not been discussed. 2) It is important to distinguish ancient from derived grasslands and to target the latter for reforestation, using species that are typical of the remaining forest patches. 3) Fire management should be conducted at a local scale and should incorporate the landscape fire history, considering, for example, the differences between two slopes in the Central Highlands.

Ecologists continue to debate the role of fire in forests of the southern Appalachian Mountains. How does climate influence fire in these humid, temperate forests? Did fire regimes change during the transition from Native American settlement to Euro-American settlement? Are fire regime changes resulting in broad vegetation changes in the forests of eastern North America? I used several approaches to address these questions. First, I used digitized fire perimeter maps from Great Smoky Mountains National Park and Shenandoah National Park for 1930-2009 to characterize spatial and temporal patterns of wildfire by aspect, elevation, and landform. Results demonstrate that fuel moisture is a primary control, with fire occurring most frequently during dry years, in dry regions, and at dry topographic positions. Climate also modifies topographic control, with weaker topographic patterns under drier conditions. Second, I used dendroecological methods to reconstruct historical fire frequency in yellow pine (Pinus, subgenus Diploxylon Koehne) stands at three field sites in the southern Appalachian Mountains. The fire history reconstructions extend from 1700 to 2009, with composite fire return intervals ranging from 2-4 years prior to the fire protection period. The two longest reconstructions record frequent fire during periods of Native American land use. Except for the recent fire protection period, temporal changes in land use did not have a significant impact on fire frequency and there was little discernible influence of climate on past fire occurrence. Third, I sampled vegetation composition in four different stand types along a topographic moisture gradient, including mesic cove, sub-mesic white pine (Pinus strobus L.) hardwood, sub-xeric oak (Quercus L.), and xeric pine forests in an unlogged watershed with a reconstructed fire history. Stand age structures demonstrate changes in establishment following fire exclusion in xeric pine stands, sub-xeric oak stands, and sub-mesic white pine-hardwood stands. Fire-tolerant yellow pines and oaks are being replaced by shade-tolerant, fire sensitive species such as red maple (Acer rubrum L.) and hemlock (Tsuga canadensis L. Carr.). Classification analysis and ordination of species composition in different age classes suggest a trend of successional convergence in the absence of fire with a shift from four to two forest communities.

Conservation of wood-decaying fungi requires improved knowledge about the long-term effects of forest management; regarding habitat loss, fragmentation and fire suppression. To better understand such effects, I examined the influence of area, isolation, fire history and forest stand characteristics on communities of wood-decaying fungi. Species richness and composition were studied along a gradient of 22 forested islands varying in size (0.16 to 17.58 ha) and fire history (spanning 5000 years) in a boreal forest archipelago in northern Sweden. A total of 490 records of 41 polypore species were found in 33 circular plots, each 0.1 ha in size. Species richness and the number of red-listed species were analyzed using generalized linear models (GLMs), while species composition was examined using non-metric multidimensional scaling (NMDS) ordination. The species composition was clearly different between recent-fire (&lt; 300 years since last fire) and old-fire (≥ 300 years since last fire) islands, mirroring the shift in tree species composition as pine-associated fungal species were replaced by spruce-associated fungal species. The volume of logs was the only variable influencing the species richness, although the diversity of logs showed a clear trend of also influencing species richness positively. The results demonstrate the importance of having both recent-fire and old-fire forests as landscape-level habitats and species pools, where fire naturally would constitute a key role for maintaining forest biodiversity in the boreal forest landscape. The results also stress the importance of dead wood for species richness at the individual forest stands.

O bioma Mata Atlântica é mundialmente reconhecido como uma das regiões de maior diversidade biológica do planeta, abrigando elevada riqueza de espécies e um elevado número de espécies endêmicas, se estendendo por cerca de 1.300.000 km2 ao longo da costa brasileira, entre as latitudes 3º e 33º S e longitudes 35º e 57º L. Como resultado do incremento das atividades humanas de uso da terra e, consequentemente, de ampla modificação da paisagem ao longo dos séculos, cerca de apenas 10-15% do bioma Mata Atlântica ainda se encontra em estado natural ou próximo ao natural, sendo considerados áreas prioritárias para conservação. Devido à grande variedade climática e geomorfológica, o bioma Mata Atlântica é um complexo mosaico de diferentes ecossistemas. Dentre estes, a floresta com Araucária (Floresta Ombrófila Mista), a floresta nebular (Floresta Ombrófila Densa Altomontana) e os campos de altitude ocupam as médias e altas altitudes da Serra do Mar, que se estende por cerca de 1000 km paralela à costa, do sul ao sudeste brasileiro. A distribuição da floresta com Araucária está relacionada ao clima úmido e relativamente frio, entre 400 e 1400 m s.n.m. no sul do Brasil e em fragmentos menores entre as altitudes de 1400 a 1800 m s.n.m. no Sudeste. Atualmente, está reduzida a não mais do que 7% da sua distribuição original. A floresta nebular se estende nas encostas do alto da Serra do mar, normalmente acima de 1100 m s.n.m. no Sul e acima de 1500 m s.n.m. no sudeste do Brasil, nos pequenos vales e sítios protegidos. Os campos de altitude são uma vegetação tipicamente herbácea, restrita aos cumes e picos da serra e aos platôs mais elevados. Estudos paleoecológicos demonstraram que, apesar deste mosaico de ecossistemas ter persistido durante o Holoceno, a perpetuação dos campos de altitude é muito frágil. Como a vegetação campestre se expande em condições climáticas mais frias e secas e parece ser adaptada ao fogo, sugere-se que a presente área de campos de altitude é maior do que esperada sobre as condições climáticas atuais, especialmente em locais mais quentes em altitudes mais baixas. Além disso, estudos de mudanças climáticas preveem um clima mais quente e úmido durante o século 21, que provavelmente irá intensificar a migração da floresta atlântica para maiores altitudes, em detrimento da vegetação campestre. Nesta pesquisa, as relações passadas e presentes do mosaico de campos de altitude e florestas altomontanas (floresta com Araucária e floresta Atlântica nebular) são exploradas por meio de análises palinológicas. Inicialmente, foi investigada a correlação atual entre cobertura vegetal e produção de pólen. Observou-se que os taxa arbóreos são superestimados no conjunto de pólen de campos de altitude, constituindo uma área muito maior de captação de pólen do que no conjunto de pólen arbóreos. Sendo assim, o conjunto de pólen que caracteriza a vegetação de campos de altitude apresenta uma grande proporção de taxa de vegetação arbórea. Posteriormente, um sedimento de quase 10.000 anos foi analisado, demonstrando que, apesar dos taxa representantes da floresta altomontana estarem presentes na região de estudo durante todo o Holoceno, a vegetação florestal expandiu majoritariamente durante o Holoceno Tardio. Até cerca de 1350 cal a AP, a vegetação de campos de altitude ocupava áreas mais extensas. Em geral, os resultados demonstraram que o aumento de temperatura e precipitação ao longo do Holoceno favoreceram a migração da floresta para altitudes mais elevadas. Além disso, a pesquisa indicou que o fogo já estava presente na região antes da chegada dos primeiros humanos no Sudeste do Brasil, implicando na adaptação da vegetação campestre ao fogo. Por último analisou-se a dinâmica da vegetação nos últimos sete séculos. Os resultados indicaram que interferências antropogênicas como fogo, pastoreio e exploração madeireira desempenharam um importante papel na relação campos-floresta na Serra do Mar do Sudeste do Brasil. Com base nestes estudos, sugere-se que a manutenção do mosaico de campos de altitude e floresta no clima presente e futuro depende tanto de um manejo ativo quanto da mudança de foco da conservação de ambientes florestais para ambientes campestres.

In semi-arid regions subject to rising temperatures and drought, palaeoecological insights into past vegetation dynamics under a range of boundary conditions are needed to develop our understanding of environmental responses to climatic changes. Here, we present a new high-resolution record of vegetation history and fire activity spanning the last 12,000 years from Lake Sidi Ali in the southern Middle Atlas Mountains, Morocco. The record is underpinned by a robust AMS radiocarbon and 210Pb/137Cs chronology and multi-proxy approach allowing direct comparison of vegetation, hydroclimate, and catchment tracers. The record reveals the persistence of steppic landscapes until 10,340 cal yr BP, prevailing sclerophyll woodland with evergreen Quercus until 6,300 cal yr BP, predominance of montane conifers (Cedrus and Cupressaceae) until 1,300 cal yr BP with matorralization and increased fire activity from 4,320 cal yr BP, and major reduction of forest cover after 1,300 cal yr BP. Detailed comparisons between the pollen record of Lake Sidi Ali (2,080m a.s.l.) and previously published data from nearby Tigalmamine (1,626m a.s.l.) highlight common patterns of vegetation change in response to Holocene climatic and anthropogenic drivers, as well as local differences relating to elevation and bioclimate contrasts between the sites. Variability in evergreen Quercus and Cedrus at both sites supports a Holocene summer temperature maximum between 9,000 and 7,000 cal yr BP in contrast with previous large-scale pollen-based climate reconstructions, and furthermore indicates pervasive millennial temperature variability. Millennial-scale cooling episodes are inferred from Cedrus expansion around 10,200, 8,200, 6,100, 4,500, 3,000, and 1,700 cal yr BP, and during the Little Ice Age (400 cal yr BP). A two-part trajectory of Late Holocene forest decline is evident, with gradual decline from 4,320 cal yr BP linked to synergism between pastoralism, increased fire and low winter rainfall, and a marked reduction from 1,300 cal yr BP, attributed to intensification of human activity around the Early Muslim conquest of Morocco. This trajectory, however, does not mask vegetation responses to millennial climate variability. The findings reveal the sensitive response ofMiddle Atlas forests to rapid climate changes and underscore the exposure of the montane forest ecosystems to future warming.

La hausse actuelle du climat pousse les espèces d’arbres tempérés à migrer vers le nord. En vue de comprendre comment certaines espèces réagiront face à cette migration, nous pouvons porter notre regard vers les populations marginales. Les études paléoécologiques de ces populations – situées au-delà de l’aire de répartition continue de l’espèce – peuvent nous informer quant aux conditions écologiques nécessaires à leur migration. Ce mémoire analyse un peuplement d’érables à sucre (Acer saccharum Marsh.) situé à la limite nordique de la répartition de l’espèce, dans la forêt tempérée mixte québécoise. L’objectif de la recherche est d’identifier quand et sous quelles conditions écologiques A. saccharum s’est établi en situation marginale. À ces fins, cette étude propose l’analyse des fossiles extraits des sédiments lacustres d’un lac situé à proximité de l’érablière. Un modèle d’apprentissage-machine est entraîné à l’aide d’images de pollens et permet la classification des pollens extraits des sédiments lacustres – le premier de la sorte. Notre méthode proposée emploi un protocole d’extraction fossile accéléré et des réseaux de neurone convolutifs permettant de classifier les pollens des espèces les plus retrouvées dans les sédiments quaternaires du nord-est de l’Amérique. Bien qu’encore incapable de classifier précisément toutes les espèces présentes dans une telle séquence fossile, notre modèle est une preuve de concept envers l’automatisation de la paléo-palynologie. Les résultats produits par le modèle combinés à l’analyse des charbons fossiles permettent la reconstruction de la végétation et des feux des 10,000 dernières années. L’établissement régional d’A. saccharum est daté à 4,800 cal. BP, durant une période de refroidissement climatique et de feux fréquents mais de faible sévérité. Sa présence locale est prudemment établie à 1,200 cal. BP. Les résultats de ce mémoire soulignent le potentiel de la paléo-palynologie automatique ainsi que la complexité de l’écologie d’A. saccharum. / The current global climate warming is pushing temperate tree species to migrate northwards. To understand how certain species will undergo this migration, we can look at marginal populations. The paleoecological studies of such populations, located beyond the species’ core distribution range, can inform us of the conditions needed for a successful migration. This research thesis analyses a sugar maple (Acer saccharum Marsh.) stand located at the northern boundary of the species’ limit, in Québec’s mixed-temperate forest. The objective of this research is to identify when and under which ecological conditions did A. saccharum establish itself as the stand’s dominant species. To that end, this study analyses the fossil record found in a neighbouring lake’s organic sediments. A machine learning-powered model is trained using pollen images to classify the lacustrine sediment’s pollen record. The first of its kind, our proposed method employs an accelerated fossil pollen extraction protocol and convolutional neural networks and can classify the species most commonly found in Northeastern American Quaternary fossil records. Although not yet capable of accurately classifying a complete fossil pollen sequence, our model serves as a proof of concept towards automation in paleo-palynology. Using results generated by our model combined with the analysis of the fossil charcoal record, the past 10,000 years of vegetation and fire history is reconstructed. The regional establishment of A. saccharum is conservatively dated at 4,800 cal. BP, during a period of climate cooling and frequent, although non-severe, forest fires. Its local presence can only be attested to since 1,200 cal. BP. This thesis’ results highlight both the potential of automated paleo-palynology and the complexity of A. saccharum’s ecological requirements.