From 23 European and North American strains Euastrum humerosum/didelta species complex (Desmidiales) I have obtained 3 lineages in molecular marker trnGucc group II intron. I did not acquire significant and homogenous results in SSU intron. It is probable that the lineages of trnGucc intron are very young. SEM revealed one central pore in cell wall and five bulges. The lineages were significantly different in their shape and dimensions. The lineages differentiated mainly in their length and breadth of the cells. The lineages inside morphotype E. humerosum differentiated in shape and dimensions of the polar lobe. The lineages inside morphotype E.didelta differentiated in shape and dimensions of the neck. That was ascertained using the geometric morphometrics with the measuring. Linear discriminant analysis of the desmids from literature revealed that is possible to partly discriminate groups of the varieties (E. humerosum var. parallelum and E. didelta in lineage A; two formae E. didelta f. val Piora and E. didelta f. latior in lineage B; E. didelta var. inermiforme and E. humerosum var. affine in lineage C). Key words: desmids, species, hidden diversity, molecular phylogenetics, geometric morphometrics, Euastrum, scanning electron microscopy

Mapping quantitative trait loci (QTL) for traits under consideration for genetic improvement is becoming more common for many aquatic species, including Atlantic salmon. The objective of the study was to map QTL associated with length, weight, shape, parr mark number and contrast in three F2 hybrid families of European and North American strains of Atlantic salmon using single nucleotide polymorphisms. GridQTL software was used to perform separate analyses for male and female linkage maps. Numerous highly significant QTL were detected for every trait. Locations of QTL differed based on age and map used. Some QTL locations for the analyzed traits were similar to those of other studies on purebred and backcross Atlantic salmon populations; however, many more QTL were detected in the hybrid F2’s. The amount of genetic variation in skin colour and pattern displayed within the transAtlantic F2 families greatly exceeded the ranges seen in nature. / NSERC Strategic Grant

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Title: Correspondence Problem in Geometric Morphometrics Tasks Author: Václav Krajíček Department / Institute: Department of Software and Computer Science Education Supervisor of the doctoral thesis: RNDr. Josef Pelikán Supervisor's e-mail address: pepca@cgg.mff.cuni.cz Abstract: Shape analysis in physical anthropology, biomedicine, and related disci- plines is mostly done using landmarks or by measuring distances. New techno- logical advancements allow the digitization of object's appearance in the form of triangular meshes or volume images. These digital images are especially beneficial in the cases when landmarks cannot be used to effectively describe the shape. In order to statistically analyze shape in a sample of observations, which are represented by these modalities, correspondence has to be found. Registration is a crucial tool in mapping the shape representations into a common space where correspondence is found by nearest neighbor principle in the case of triangular meshes or by overlaps in the case of volume images. B- spline based non-rigid registration is chosen because of its versatility, relative speed and ability to handle both meshes and volume images. Experiments were also performed with other alternatives - Thin-plate splines and Coherent point drift. The algorithm was modified to handle...

From 23 European and North American strains Euastrum humerosum/didelta species complex (Desmidiales) we have obtained 3 lineages in molecular marker trnGuuc group II intron. We did not acquire significant and homogenous results in SSU intron. It is probable that the lineages are very young. The lineages were significantly different in their shape and dimensions. We used the geometric morphometrics with the measuring of the lengths and breath of the semicells, isthmus and their ratios. The lineages differentiated in their dimensions and shape variable polar lobes and neck. SEM revealed the one central pore in cell wall on the contrary, with variant E. didelta var. bengalicum, which has two pores according the literature records. Key words: desmids, species, hidden diversity, molecular phylogenetics, geometric morphometrics, Euastrum, scanning electron microscopy

Depuis leur domestication, les équidés sont étroitement associés aux activités humaines et ont, au fil des siècles, été façonnés au gré d’exigences morphologiques, esthétiques, d’allure ou de performance. Cette sélection artificielle a fortement impacté leurs traits phénotypiques et fonctionnels, produisant le large panel des races actuelles. Les sources historiques ont abondamment décrit l’importance des équidés et la diversité de leurs usages dans les sociétés passées. Ceci interroge donc sur la potentielle existence de types morphologiques spécialisés à des périodes antérieures à l’émergence des races. Dans ce contexte, les os présentent un intérêt particulier en tant que reflet des caractéristiques morphologiques et fonctionnelles des animaux du passé. En outre, les équidés étant fréquemment retrouvés sous la forme de squelettes complets en contexte archéologique,leurs restes offrent la possibilité d’étudier l’intégralité de la morphologie squelettique et notamment les interactions entre les os. Pourtant, les restes osseux d’équidés restent relativement peu exploités, probablement en raison des limites inhérentes aux méthodes d’étude actuelles. L’objectif de ce travail est de mieux comprendre la diversité phénotypique et fonctionnelle des équidés domestiques par des approches en morphométriegéométrique. La question de leur identification spécifique est tout d’abord abordée via la recherche de critères discriminants, qualitatifs et quantitatifs, applicables à du matériel archéologique. Les patterns de covariation entre les os sont ensuite explorés afin d’aborder des questions fonctionnelles. Les résultats révèlent une forte intégration morphologique entre les os des membres chez les équidés domestiques et mettent en évidence des différences entre les races selon un axe de covariation principalement porté par des interactions fonctionnelles. Ceci tend à montrer que la sélection artificielle, considérée comme le principal acteur de la diversification morphologique chez le cheval domestique, n’influence pas seulement le phénotype mais aussi les facteurs biologiques qui le sous-tendent. Enfin, une première application à des spécimens archéologiques permet dediscuter l’impact de potentielles formes de sélection artificielle et de standardisation morphologique sur des chevaux anciens. Les résultats démontrent l’intérêt d’étudier non seulement les variations de forme des os, mais aussi leurs covariations, afin d’enrichir nos connaissances concernant les traits morphologiques et fonctionnels des animaux passés, ainsi que les pratiques d’élevage qui y sont associées. L’étude des covariations contribueégalement à accroitre notre compréhension des processus micro-évolutifs, tels que la sélection artificielle, et à travers cela, permet de mieux documenter la manière dont la diversité phénotypique est produite. / Equids and humans share a long history of interaction from the first domestication to the standardization of modern breeds. In order to suit human activities, they have been molded through selection for conformation, harmony, gaits, or performance. This artificial selection is known to have largely impacted morphological and functional traits, producing the large range of current breeds. Historical sources extensively described the widepanel of equid usage in different human civilizations, raising the issue of the potential existence of specialized morphological types in the past, prior to the emergence of modern breeds. In this respect, bones prove to be of particular interest, as an image of the phenotypic and functional characteristics of past animals. Moreover, horses being often found as complete skeletons in archaeological contexts, their remains allow for the study of the complete skeletal morphology, especially concerning the interactions between bones. However, equid bone remains are largely under-explored, probably due to the recurrent limitations inherent to existing study methods. The objective of this work is to describe and understand the phenotypic and functional diversity of domestic equids, using geometric morphometrics approaches. Identification issues are firstly addressed through the research of qualitative and quantitative discrimination criteria, applicable to archaeological samples. Next, morphological and functional questions are addressed, especially investigating bone shape covariation. The obtained results reveal strong morphological integration within equid limb bones and evidenced breed specific differences along a covariation axis largely produced by functional interactions between bones. They show thatartificial selection, regarded as responsible of most of the modern diversification of horse breeds, not only targets the phenotype but also impacts the biological factors which underlie it. Finally, a first application to archaeological skeletons allows to question the influence of potential artificial selection and morphological standardization on past horses. The results demonstrate the interest of not only exploring bone shape variation,but also covariation, to increase our knowledge about the morphological and functional traits of past equids and about the related breeding practices. The study of morphological integration may also contribute to enhance our understanding of micro-evolutionary processes, such as artificial selection on domestic taxa, and through that, gain insights into how phenotypic diversity is produced.

Radiações evolutivas estão entre os eventos mais fascinantes da evolução. Grande parte da diversidade da vida, tanto de espécies como ecológica, surgiu nos breves intervalos temporais de rápida especiação que configuram as radiações. As causas ecológicas e não-ecológicas do surgimento da diversidade em radiações evolutivas, em especial nas radiações adaptativas, são tema de pesquisa há muito tempo, pelo menos desde que Darwin observou a imensa diversidade de um grupo de pássaros nas ilhas Galápagos. Desde então, as ilhas têm sido os ambientes ideais para o estudo desse fenômeno, e foi a partir das observações e experimentos em ilhas que toda a teoria ecológica das radiações evolutivas surgiu. Contudo, as causas ecológicas das radiações explosivas ocorridas em amplas escalas continentais permanecem tema de constante debate. Nesta tese, foram investigados os determinantes ecológicos e não-ecológicos (e.g., geografia, contingências históricas, efeitos filogenéticos) da evolução morfológica dos roedores sigmodontíneos durante sua radiação na região Neotropical, em especial no continente sul-americano. Para isso, foi quantificada a morfologia do crânio e mandíbula de mais de dois mil exemplares do grupo, e foram investigadas variações ecomorfológicas nos níveis interespecífico (I), intraespecífico (II), e entre assembleias de sigmodontíneos (III). Na Parte I da tese, foram investigadas duas predições da teoria da radiação adaptativa, a correlação-fenótipo ambiente (capítulo 1) e a funcionalidade do fenótipo através da força da mordida (capítulo 2), permitindo determinar o papel da divergência ecológica na evolução morfológica das espécies. Na Parte II (capítulo 3), foram investigadas as contribuições relativas de processos determinísticos e neutros sobre a variação morfológica entre populações de uma espécie de roedor sigmodontíneo amplamente distribuída, Akodon cursor. Na Parte III, a influência da variação ambiental e da distribuição espacial das linhagens filogenéticas de sigmodontíneos sobre o tamanho corporal (capítulo 4) e forma do crânio e mandíbula (capítulo 5), foram investigados no contexto biogeográfico da variação no tamanho e forma média entre assembleias de sigmodontíneos. As contribuições originais desta tese foram: (i) mostrar que a radiação evolutiva dos roedores sigmodontíneos foi guiada principalmente por fatores históricos e geográficos ao invés de fatores ecológicos; (ii) sugerir que radiações evolutivas ocorridas em escalas continentais, especialmente de roedores, têm um componente geográfico e histórico mais determinante do que o componente ecológico; (iii) revelar que a força da mordida varia pouco entre roedores sigmodontíneos herbívoros e granívoros, o que provavelmente é resultado do fenótipo generalista desses roedores; (iv) apontar que sigmodontíneos com dieta insetívora têm uma taxa de evolução mais rápida, e parecem estar evoluindo sua forma do crânio/mandíbula e sua força da mordida em uma direção diferente das demais espécies; (v) demonstrar que, dentro de uma espécie de sigmodontíneo (Akodon cursor), fluxo gênico e deriva genética explicam melhor a forma do crânio entre populações, enquanto a variação ambiental explica melhor o tamanho do crânio, indicando que o tamanho é uma característica mais lábil e mais sujeita a pressões ambientais do que a forma do crânio; (vi) mostrar que a variação biogeográfica, tanto do tamanho quanto da forma média do crânio/mandíbula entre assembleias de sigmodontíneos, está sob influência da distribuição diferencial das linhagens filogenéticas ao longo do espaço geográfico, bem como de variáveis ambientais; o que indica conservação filogenética de nicho à nível de metacomunidades. De modo geral, ao investigar as contribuições relativas dos componentes adaptativo e não-adaptativo da evolução morfológica, foram obtidas informações importantes para conhecer as causas da diversificação morfológica em Sigmodontinae, aumentando nosso conhecimento sobre as origens de toda a diversidade biológica. / Evolutionary radiations are among the most fascinating phenomena of evolution. Most of the biological diversity on the planet, both in terms of species and ecological diversity, appeared during these brief intervals of rapid speciation. The ecological and non-ecological causes of the emergence of diversity in evolutionary radiations, especially in adaptive radiations, have long been the subject of research, beginning with Darwin and his notice of the astonishing diversity of bird forms in the Galapagos Islands. Islands have since been ideal environments in which to study evolutionary and adaptive radiations, and indeed it was from observations and experiments on islands that all ecological theory of evolutionary radiations arose. However, the ecological causes of explosive radiations occurring on large continental scales are still a matter of debate. In this dissertation, I investigated the ecological and non-ecological (e.g., geography, historical contingencies, phylogenetic effects) determinants of morphological evolution in sigmodontine rodents during their radiation in the Neotropical region, particularly on the South-American continent. The skull and mandible morphology of more than two thousand specimens was quantified, and ecomorphological variation was investigated on three levels: interspecific (I), intraspecific (II), and among sigmodontine assemblages (III). In part I, two predictions from the ecological theory of adaptive radiation were investigated: the phenotype-environment correlation (chapter 1), and the trait utility through the bite force (chapter 2). This approach enabled determination of the role of ecological divergence in species morphological evolution. In part II (chapter 3), I investigated the relative contributions of deterministic and neutral processes to morphological variation among populations of one widely distributed sigmodontine species, Akodon cursor. In part III, I investigated the influence of environmental variation and spatial distribution of phylogenetic lineages on body size (chapter 4) and on shape of the skull and mandible (chapter 5), in the context of biogeographical variation of mean size and shape in sigmodontine assemblages. The original contributions of this dissertation are as follows: (i) to demonstrate that the evolutionary radiation of sigmodontines was driven mainly by historical and geographical factors instead of ecological factors; (ii) to suggest that evolutionary radiations on continental scales, especially rodent radiations, have a more determinant historical and geographical component than an ecological one; (iii) to show small variation in bite force between sigmodontine herbivores and granivores, which is likely a consequence of the generalist phenotype of these rodents; (iv) to highlight that insectivorous sigmodontines have a faster rate of morphological evolution than other diet groups, and that skull and mandible morphology and bite force are evolving in different directions than in other species; (v) to demonstrate that within a sigmodontine species (Akodon cursor), gene flow and genetic drift better explain variation in skull shape among populations, while environmental variation better explains variation in skull size, which suggests that size is more labile feature than shape and thus more prone to change with environmental pressures; and (vi) to show that biogeographical variation in mean body size, mean skull shape, and mean mandible shape across sigmodontine assemblages is influenced by the different distributions of phylogenetic lineages over geographical space, as well by environmental variables, which indicates phylogenetic niche conservatism at the metacommunity level. These results shed light on some of the factors driving morphological diversification in Sigmodontinae. Further, the analytical approach(es) utilized may be useful for general investigations of the relative contributions of adaptive and non-adaptive components of morphological evolution, thereby potentially increasing our knowledge of the origins of all biological diversity.

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior / Tribosphenic molars are considered major innovations of mammals and are related to different structures and variables that may explain their adaptation. The aim of this study was to verify the relationship of body size, mandible shape and diet variables and all four molars of didelphid marsupials in a phylogenetic approach. Geometric morphometric analysis of shape of the lower molars were performed on 261 specimens, 130 females and 131 males, containing a total of 14 genera and 37 species of the Didelphidae family. Twenty- four anatomical landmarks were used to describe the shape of the molars, and twenty-three for the mandible. The body size was estimated from values of molar size (lnCS) and diet was categorized through the literature. All analyzes were performed separately for males and females due to sexual dimorphism. Regressions were performed between the shape of molars and the explanatory variables body size, mandible shape and diet. An analysis of Variation Partitioning was applied to test the explanation portion of each variable. The phylogenetic effect on shape was controlled in such analyses with the method of phylogenetic generalized least squares (PGLS). For females the diet has a major influence on the molars (30.1%), followed by body size (9.3%) and mandibular shape (2.7%), whereas for males the diet has also a lot of influence (31.4%), body size (10.3%) and mandibular shape (28.5%). The configuration of molars due to diet showed greater deformity in a gradient, showing increased size from the first to the fourth molar area (greater m4) for more faunivorous/omnivorous species and, contrarily, a decrease in size toward the lower m4 for frugivorous/omnivorous species. Variation Partitioning in the diet was more explanatory for females (18.6%) and mandibular shape (13.8%); and the interaction of mandibular shape with diet was more important for males (19.3%). The explanation of diet for both sexes, although significant, has a strong influence of phylogenetic relatedness, while both mandibular shape and body size for males show no such influence of phylogeny. The great difference in the results for both sexes highlights the importance of life style influencing differentially females and males. The variation of the non-uniform molar shape exposes what is already seen in the literature: that didelphids have not a fully exclusive diet. Thus, it is possible to realize the importance of molars in both function and phylogenetic history. / Os molares tribosfênicos são considerados grandes inovações dos mamíferos e se relacionam com diversas estruturas e variáveis as quais podem explicar a sua adaptação. O objetivo deste estudo foi verificar a importância da relação do tamanho corporal, da forma mandibular e da dieta, sob enfoque filogenético, no conjunto dos quatro molares inferiores dos marsupiais didelfídeos. Análises de morfometria geométrica da forma dos molares inferiores foram realizadas em 261 espécimes, 130 fêmeas e 131 machos, contemplando no total 14 gêneros e 37 espécies da família Didelphidae. Vinte e quatro marcos anatômicos foram estimados para descrever a forma dos molares; vinte e três para a mandíbula. O tamanho corporal foi estimado a partir de valores de tamanho molar (lnCS) e a dieta foi categorizada através de dados da literatura. Todas as análises foram realizadas separadamente para fêmeas e machos devido ao dimorfismo sexual. Regressões foram realizadas entre a forma dos molares e as variáveis tamanho corporal, forma mandibular e dieta. Uma análise de Partição de Variância foi aplicada para testar a porção de explicação de cada variável. E controlando o efeito filogenético sobre a forma, o método utilizado foi o de mínimos quadrados generalizados filogenéticos (PGLS). Para fêmeas a dieta apresenta grande influência sobre os molares (30.1%), seguido do tamanho corporal (9.3%) e forma mandibular (2.7%); enquanto para machos a dieta também possui muita influência (31.4%), o tamanho corporal (10.3%) e a forma mandibular (5.3%). A conformação dos molares devido a dieta mostrou maior deformidade, em um gradiente, evidenciando para espécies mais faunívoras/onívoras um aumento em tamanho de área do primeiro ao quarto molar (m4 maior) e espécies frugívoras/onívoras uma diminuição nos mesmos (m4 menor). Na Partição de Variância, a dieta foi mais explicativa para fêmeas (18.6%) e a forma mandibular (13.8%), bem como a interação dessa com a dieta para machos (19.3%). A explicação da dieta para ambos os sexos, apesar de significativa, apresenta forte influência da proximidade filogenética, enquanto a forma mandibular de ambos e tamanho corporal de machos não apresentam essa influência na sua explicabilidade. A maior diferença nos resultados para os sexos evidencia os hábitos de vida distintos, e o quanto essas pressões influenciam de formas variadas fêmeas e machos. Já a variação da forma molar não uniforme expõe o já constatado na literatura de que didelfídeos não apresentam uma dieta totalmente exclusiva. Sendo assim, é possível perceber a importância dos molares em expressar tanto a função quanto a história filogenética.

Radiações evolutivas estão entre os eventos mais fascinantes da evolução. Grande parte da diversidade da vida, tanto de espécies como ecológica, surgiu nos breves intervalos temporais de rápida especiação que configuram as radiações. As causas ecológicas e não-ecológicas do surgimento da diversidade em radiações evolutivas, em especial nas radiações adaptativas, são tema de pesquisa há muito tempo, pelo menos desde que Darwin observou a imensa diversidade de um grupo de pássaros nas ilhas Galápagos. Desde então, as ilhas têm sido os ambientes ideais para o estudo desse fenômeno, e foi a partir das observações e experimentos em ilhas que toda a teoria ecológica das radiações evolutivas surgiu. Contudo, as causas ecológicas das radiações explosivas ocorridas em amplas escalas continentais permanecem tema de constante debate. Nesta tese, foram investigados os determinantes ecológicos e não-ecológicos (e.g., geografia, contingências históricas, efeitos filogenéticos) da evolução morfológica dos roedores sigmodontíneos durante sua radiação na região Neotropical, em especial no continente sul-americano. Para isso, foi quantificada a morfologia do crânio e mandíbula de mais de dois mil exemplares do grupo, e foram investigadas variações ecomorfológicas nos níveis interespecífico (I), intraespecífico (II), e entre assembleias de sigmodontíneos (III). Na Parte I da tese, foram investigadas duas predições da teoria da radiação adaptativa, a correlação-fenótipo ambiente (capítulo 1) e a funcionalidade do fenótipo através da força da mordida (capítulo 2), permitindo determinar o papel da divergência ecológica na evolução morfológica das espécies. Na Parte II (capítulo 3), foram investigadas as contribuições relativas de processos determinísticos e neutros sobre a variação morfológica entre populações de uma espécie de roedor sigmodontíneo amplamente distribuída, Akodon cursor. Na Parte III, a influência da variação ambiental e da distribuição espacial das linhagens filogenéticas de sigmodontíneos sobre o tamanho corporal (capítulo 4) e forma do crânio e mandíbula (capítulo 5), foram investigados no contexto biogeográfico da variação no tamanho e forma média entre assembleias de sigmodontíneos. As contribuições originais desta tese foram: (i) mostrar que a radiação evolutiva dos roedores sigmodontíneos foi guiada principalmente por fatores históricos e geográficos ao invés de fatores ecológicos; (ii) sugerir que radiações evolutivas ocorridas em escalas continentais, especialmente de roedores, têm um componente geográfico e histórico mais determinante do que o componente ecológico; (iii) revelar que a força da mordida varia pouco entre roedores sigmodontíneos herbívoros e granívoros, o que provavelmente é resultado do fenótipo generalista desses roedores; (iv) apontar que sigmodontíneos com dieta insetívora têm uma taxa de evolução mais rápida, e parecem estar evoluindo sua forma do crânio/mandíbula e sua força da mordida em uma direção diferente das demais espécies; (v) demonstrar que, dentro de uma espécie de sigmodontíneo (Akodon cursor), fluxo gênico e deriva genética explicam melhor a forma do crânio entre populações, enquanto a variação ambiental explica melhor o tamanho do crânio, indicando que o tamanho é uma característica mais lábil e mais sujeita a pressões ambientais do que a forma do crânio; (vi) mostrar que a variação biogeográfica, tanto do tamanho quanto da forma média do crânio/mandíbula entre assembleias de sigmodontíneos, está sob influência da distribuição diferencial das linhagens filogenéticas ao longo do espaço geográfico, bem como de variáveis ambientais; o que indica conservação filogenética de nicho à nível de metacomunidades. De modo geral, ao investigar as contribuições relativas dos componentes adaptativo e não-adaptativo da evolução morfológica, foram obtidas informações importantes para conhecer as causas da diversificação morfológica em Sigmodontinae, aumentando nosso conhecimento sobre as origens de toda a diversidade biológica. / Evolutionary radiations are among the most fascinating phenomena of evolution. Most of the biological diversity on the planet, both in terms of species and ecological diversity, appeared during these brief intervals of rapid speciation. The ecological and non-ecological causes of the emergence of diversity in evolutionary radiations, especially in adaptive radiations, have long been the subject of research, beginning with Darwin and his notice of the astonishing diversity of bird forms in the Galapagos Islands. Islands have since been ideal environments in which to study evolutionary and adaptive radiations, and indeed it was from observations and experiments on islands that all ecological theory of evolutionary radiations arose. However, the ecological causes of explosive radiations occurring on large continental scales are still a matter of debate. In this dissertation, I investigated the ecological and non-ecological (e.g., geography, historical contingencies, phylogenetic effects) determinants of morphological evolution in sigmodontine rodents during their radiation in the Neotropical region, particularly on the South-American continent. The skull and mandible morphology of more than two thousand specimens was quantified, and ecomorphological variation was investigated on three levels: interspecific (I), intraspecific (II), and among sigmodontine assemblages (III). In part I, two predictions from the ecological theory of adaptive radiation were investigated: the phenotype-environment correlation (chapter 1), and the trait utility through the bite force (chapter 2). This approach enabled determination of the role of ecological divergence in species morphological evolution. In part II (chapter 3), I investigated the relative contributions of deterministic and neutral processes to morphological variation among populations of one widely distributed sigmodontine species, Akodon cursor. In part III, I investigated the influence of environmental variation and spatial distribution of phylogenetic lineages on body size (chapter 4) and on shape of the skull and mandible (chapter 5), in the context of biogeographical variation of mean size and shape in sigmodontine assemblages. The original contributions of this dissertation are as follows: (i) to demonstrate that the evolutionary radiation of sigmodontines was driven mainly by historical and geographical factors instead of ecological factors; (ii) to suggest that evolutionary radiations on continental scales, especially rodent radiations, have a more determinant historical and geographical component than an ecological one; (iii) to show small variation in bite force between sigmodontine herbivores and granivores, which is likely a consequence of the generalist phenotype of these rodents; (iv) to highlight that insectivorous sigmodontines have a faster rate of morphological evolution than other diet groups, and that skull and mandible morphology and bite force are evolving in different directions than in other species; (v) to demonstrate that within a sigmodontine species (Akodon cursor), gene flow and genetic drift better explain variation in skull shape among populations, while environmental variation better explains variation in skull size, which suggests that size is more labile feature than shape and thus more prone to change with environmental pressures; and (vi) to show that biogeographical variation in mean body size, mean skull shape, and mean mandible shape across sigmodontine assemblages is influenced by the different distributions of phylogenetic lineages over geographical space, as well by environmental variables, which indicates phylogenetic niche conservatism at the metacommunity level. These results shed light on some of the factors driving morphological diversification in Sigmodontinae. Further, the analytical approach(es) utilized may be useful for general investigations of the relative contributions of adaptive and non-adaptive components of morphological evolution, thereby potentially increasing our knowledge of the origins of all biological diversity.

Submitted by JÚLIO HEBER SILVA (julioheber@yahoo.com.br) on 2017-06-09T18:38:01Z No. of bitstreams: 2 Tese - Verônica Thiemi Tsutae de Sousa - 2016.pdf: 1855796 bytes, checksum: a92374006d1189b1bcac663f0f96a8d0 (MD5) license_rdf: 0 bytes, checksum: d41d8cd98f00b204e9800998ecf8427e (MD5) / Approved for entry into archive by Luciana Ferreira (lucgeral@gmail.com) on 2017-06-12T12:21:54Z (GMT) No. of bitstreams: 2 Tese - Verônica Thiemi Tsutae de Sousa - 2016.pdf: 1855796 bytes, checksum: a92374006d1189b1bcac663f0f96a8d0 (MD5) license_rdf: 0 bytes, checksum: d41d8cd98f00b204e9800998ecf8427e (MD5) / Made available in DSpace on 2017-06-12T12:21:54Z (GMT). No. of bitstreams: 2 Tese - Verônica Thiemi Tsutae de Sousa - 2016.pdf: 1855796 bytes, checksum: a92374006d1189b1bcac663f0f96a8d0 (MD5) license_rdf: 0 bytes, checksum: d41d8cd98f00b204e9800998ecf8427e (MD5) Previous issue date: 2016-03-22 / Coordenação de Aperfeiçoamento de Pessoal de Nível Superior - CAPES / Individuals of the same species have morphological, physiological and behavioral characteristics that determine when and where they will exist and how they will interact with individuals of other species. The ecomorphological diversity of anuran tadpoles make them great study subjects, as the resources use patterns (ecology) and the phylogenetic relationships among species can be inferred from the phenotypic properties. The influence of contemporary factors on the structure of tadpoles communities has been intensively studied for decades, but the use patterns and partitioning of food resources, have not received the same attention from researchers. Little is known about the ecology and feeding behavior of tadpoles, including its biomechanics, the influence of abiotic factors on feeding behavior, as well as the behavioral plasticity exhibited by tadpoles in the exploitation of food resources. These issues were investigated during the PhD and the results of the work developed during the course of this period are presented in this Dissertation In the first chapter, we verified whether the carnivorous tadpole of Leptodactylus labyrinthicus would adjust their feeding kinematics to maximize food consumption when feeding on alternative food sources. Our results indicate that, depending on the food source to be explored, the tadpoles may exhibit different feeding behavior: to consume the food particles suspended in the water surface, the tadpoles exhibit the filter-feeding behavior; in contrast, to consume food particles that are attached to submerse surfaces, tadpoles use the scrape feeding behavior. Filtering and scraping feeding behaviors are quantitative and qualitatively distincts, i.e. these feeding behaviors kinematics and the shape of the oral disc during feeding show distinguishable features. In the second chapter, we tested the hypothesis that changes in the water mean temperature would have differential 15 effects on the feeding kinematics of tadpoles of two anuran species: Rhinella schneideri, whose tadpoles are benthic, and Trachycephalus typhonius, whose tadpoles are nektonic. Our results indicate that the temperature affects the kinematics of the scrape feeding behavior. However, the temperature effect on kinematics variables may depend on the species, so the changes are not in the same direction (i.e. temperature may have a positive effect on some kinematic variables but negative effects on others). Finally, in the third chapter, our aim was to verify whether the ecological and morphological influences on feeding behavior reflect the phylogenetic relationship among species. / Indivíduos de uma mesma espécie possuem características morfológicas, fisiológicas e comportamentais que determinam quando e onde eles poderão existir e como interagirão com indivíduos de outras espécies. A diversidade ecomorfológica de girinos de anfíbios anuros os tornam ótimos organismos de estudo, já que os padrões de uso de recursos (ecologia) e as relações filogenéticas entre as espécies podem ser inferidas a partir das propriedades fenotípicas. A influência de fatores contemporâneos sobre a estrutura das comunidades de girinos tem sido intensamente estudada há décadas, mas os padrões de uso e partilha de recursos alimentares não têm recebido a mesma atenção dos pesquisadores. Pouco se sabe sobre a ecologia e o comportamento alimentar dos girinos, incluindo a biomecânica do comportamento alimentar, a influência de fatores abióticos sobre o comportamento alimentar, além da plasticidade comportamental exibida pelos girinos na exploração dos recursos alimentares. Estas questões foram investigadas durante o Doutorado e os resultados do trabalho durante ao longo deste período são apresentados na presente tese, que compreende três capítulos. No primeiro, verificamos se o girino carnívoro de Leptodactylus labyrinthicus ajusta seu comportamento alimentar para maximizar o consumo de alimento obtido a partir de fontes alimentares alternativas. Os resultados indicam que, dependendo da fonte alimentar a ser explorada, os girinos podem adotar comportamentos alimentares distintos: para consumir alimentos disponíveis em suspensão na água, os girinos exibem o comportamento de filtração; já para consumir alimentos aderidos em superfícies submersas, os girinos utilizam o comportamento de raspagem. Tais comportamentos alimentares são discerníveis com relação às suas cinemáticas e aos formatos que o disco oral assume durante a alimentação por filtração e por raspagem. No segundo, testamos a 13 hipótese de que mudanças na temperatura média da água teriam efeitos diferenciais sobre o comportamento alimentar de girinos de duas espécies de anuros: Rhinella schneideri, que possui girinos bentônicos, e Trachycephalus typhonius, cujos girinos são nectônicos. Os resultados indicam que a temperatura afeta a cinemática do comportamento alimentar de raspagem. No entanto, devido à interação entre espécie e temperatura, o efeito da temperatura sobre as variáveis cinemáticas pode não produzir uma variação no mesmo sentido. Finalmente, no terceiro capítulo, nosso objetivo foi o de verificar se a influência dos fatores ecológicos e morfológicos sobre o comportamento alimentar dos girinos reflete as relações filogenéticas entre as espécies.