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<p>The distribution of Blanding’s turtles in North America is centered on the Great Lakes region, where the impacts from high levels of development have reduced and isolated populations. They are particularly sensitive to habitat loss and fragmentation because of their broad habitat requirements, migratory behaviour, and relatively large seasonal movements and home ranges. Consequently, Blanding’s turtles have been designated a species at-risk throughout the majority of their geographic range. In 2011 we conducted a radio-tracking program to compare the home ranges and movement patterns of Blanding’s turtles in two eco-regions of Ontario that have contrasting habitat and landscape characteristics: Georgian Bay Islands National Park and Rondeau Provincial Park. We also used GPS loggers to supplement data collection by radio-tracking and to evaluate the effectiveness of GPS loggers in tracking the movements of a semi-aquatic species. We found differences in home range between our two study populations that may be linked to landscape features and seasonal differences in movement within the population in Georgian Bay Islands National Park. We also determined that GPS loggers, when used in combination with radio-tracking, can effectively track the movements of Blanding’s turtles with a higher temporal and spatial resolution than by radio-tracking alone. This study highlights the importance of developing management strategies that are tailored to the spatial requirements of distinct populations, and the need for conservation measures that protect aquatic and terrestrial habitat surrounding the main activity centres of Blanding’s turtles.</p> / Master of Science (MSc)

Fire suppression, combined with lack of forest thinning and short-rotation, monodominant management, has drastically altered the landscape in the southeastern U.S., leading to the loss of open pine ecosystems and associated avian species. Management of open pine ecosystems is a common practice; yet, there remains uncertainty regarding how vegetation structure impacts priority species. Using empirical data, I assessed changes in species abundance and associated vegetation characteristics before and after management. I also sought to identify vegetation characteristics that influence home range establishment and microhabitat selection of Bachman’s Sparrows. Priority species were negatively associated with hardwood midstory and abundance per site increased following management. Home range establishment of Bachman’s Sparrows was influenced by disturbance, canopy cover, and slope, while microhabitat selection was influenced by pine basal area, available perching options, vegetation density, and herbaceous groundcover. Understanding how vegetation structure impacts priority species may be helpful in guiding conservation and management efforts.

White-tailed deer (Odocoileus virginianus) are a highly charismatic game species with considerable ecological and economic impacts across most of their range. In the Central Appalachian Mountains, deer are a keystone species in forested ecosystems. Regionally, populations vary in herd growth or decline. These fluctuations are important in that they often drive many aspects of population management and regulation, which are dependent on herd demographics. Some key population vital rates allowing better understanding of these changes in white-tailed deer herds are survival, cause-specific mortality, home-range variation, both broad and fine-scale resource selection, and ultimately population growth trends in response to changes in both population vital rates and hunter harvest regulations. In this study, I address each of these concepts within a deer population in Bath County, Virginia, that has presumably been in overall decline since the early 1990's. From June-September, 2019-2020, I monitored survival and cause specific mortality of 57 neonate white-tailed deer until 12 weeks of age. Fawn and adult female survival was 0.310 (95% CI = 0.210-0.475) and 0.871 (95%CI=0.790-0.961) respectively. During the study, I observed a total of 37 fawn mortalities and identified the cause of death using field evidence and through analyzing genetics from residual predator salvia recovered on deer carcasses. Mortalities included 28 predation events and 9 deaths from other causes (e.g., abandonment, malnutrition, or disease). Black bears accounted for 48.6% of all mortality and 64.2% of known predations within our study. My top model identified elevation as a significant predictor of fawn survival, with mortality risk increasing 20% for every 100m increase in elevation. My model using observed vital rates predicted an increasing population of λ = 1.10 (interquartile range, IQR 1.06-1.14). The population was predicted to increase by 2% with a 10% increase in doe harvest (λ = 1.02, IQR = 0.97-1.06) but declined by 7% at 20% harvest (λ = 0.93, IQR = 0.89-0.96). I found that fawning home ranges of females that successfully reared fawns to the end of the season had significantly larger home ranges than those that were unsuccessful at higher elevations. Fawning home ranges for females with fawns increased approximately 71ha in size for every 100m increase in mean home range elevation, whereas seasonal home ranges of females without fawns decreased approximately 1.5 ha for every 100m increase in mean home range elevation. Deer selected fawn-rearing areas nearer to forested edges, open habitats, and at higher elevations, while they avoided areas near disturbed and mature forests. Within the fawn rearing area, females selected locations closer to disturbed forest, open habitats, and forested edge, while avoiding mature forest habitats, and higher elevations. Females selected birth sites with higher levels of visual obstruction. Using a step-selection method for real-time resource selection across biological seasons, we found that female deer selected for open areas during the fawning, breeding, early gestational, and late gestational seasons. During the fall breeding season, females avoided forested edge, but selected for areas at higher elevations. During early gestational seasons females selected disturbed habitats and areas at higher elevations while again avoiding forested edge. Overall, my work highlights variations in population dynamics of white-tailed deer in areas of the Central Appalachian Mountains that are primarily characterized by poor habitat quality and provides novel insights into fine-scale spatial ecology of female deer across biological seasons within the region. Ultimately, while the deer population in our study was not predicted to be in decline, this work supports predation risk as being a significant factor associated with habitat quality. / Doctor of Philosophy / White-tailed deer (Odocoileus virginianus) are a game species with extensive ecological and economic impacts across most of their range. In the central Appalachian Mountains, many populations across the region vary in terms of herd size growth, stability, or decline. These fluctuations are important in that they often drive many aspects of population management and regulation, which are dependent on the status of herd demographics. Some key population vital rates that aid us in better understanding these changes in white-tailed deer herds are survival and cause-specific mortality, home-range variation in association with habitat quality and the ability to successfully reproduce, population trends under hypothetical management scenarios, and resource selection of various habitats that are available across the landscape. In this study, I address each of these concepts within a deer population in Bath County, Virginia, which has presumably been in decline since the early 1990's. As expected, fawn survival was lower than previously reported from other study areas of the Central Appalachians Mountains. Predation was the leading cause of fawn mortality, with black bears being responsible for most predation events. Fawn mortality risk was significantly associated with elevation - where fawns at higher elevations were those at greater risk. Surprisingly, the deer population in Bath County was projected to be increasing under current conditions and was also projected to be stable-to-increasing even under some hypothetical scenarios which would negatively impact population growth (i.e., 10% increase in female harvest or 17% reduction in fawn survival). Fawning home ranges of collared females which successfully reared known fawns to the end of the biological season were significantly influenced by elevation; such that females with fawns had home ranges that increased in size with increasing elevation, whereas females without fawns had home ranges which decreased slightly in size with increasing elevation. At birth sites, females selected locations characterized by higher levels of visual obstruction compared to randomly sampled areas. Of the habitat types analyzed, both selection or avoidance of specific habitats varied across both biological season and spatial scale. Ultimately, while I found that some deer populations associated with poor quality habitats in the Central Appalachians may not be in decline, deer were likely influenced greatly by habitat quality – especially pertaining to predation risk – throughout Bath County.

The spotted grunter (Pomadasys commersonnii) is an important, estuarine-dependent, fishery species in southern Africa. Since estuaries are essential habitats in the life history of this species, the quantification of area use patterns and movements is important for fisheries management. In this study, acoustic telemetry was used to investigate movements, use of habitat and home range dynamics of spotted grunter in the small intermittently open East Kleinemonde Estuary on the Eastern Cape coast of South Africa. Nine spotted grunter (range: 326-489mm TL) were surgically equipped with uniquely coded acoustic transmitters. Positional fixes were obtained by manual tracking tagged individuals on six days and six nights during five tracking sessions from March to November 2004. In addition, five stationary data-logging receivers, moored at specific locations from the mouth to the top of the estuary provided additional long-term monitoring. Kernel home ranges (95% UD) varied in size (26 296-165 321m²) but were all located in a common high use area situated between 300-1 300m from the estuary mouth, which coincided with the highest abundance of prey items. There was no significant variation in home range size [C² (N = 9, df = 4) = 4.18; p = 0.38] between the temporally segregated tracking sessions (over nine months). The persistence of these home range estimates were confirmed by the long-term data-logging receivers. There was no significant diel variation in home range size [F(4, 64) = 0.05, p = 0.99] or core area size [F(4, 64) = 1.40, p = 0.25]. Fish length showed negative, although not significant, relationships between home range size (p = 0.225); number of home range areas (p = 0.065); core area size (p = 0.512) and home range length (p = 0.320). Use of habitat and home range dynamics of spotted grunter in the East Kleinemonde Estuary were consistent over the nine month study period, and they appeared to be influenced more by biotic than abiotic factors. However, when the mouth opened at the end of the study, most tagged fish vacated their home ranges and emigrated to sea.

The movements of two vervet monkey troops were studied to determine whether they optimize their rate of food intake in relation to seasonal energy availability. The effect of variation in habitat structure on the troops’ foraging strategies while utilizing temporally and spatially distributed resources was determined. Troop home range boundaries were delineated, the various plant communities and species utilised by the troops identified and classified, and variations in home range and vegetation structure were reported. The diets of the troops were determined and compared. Effects of coexistence on competition were assessed. Vervet food trees were randomly selected, marked and seasonal phenological data collected. Samples of food items constituting the two troops diets were collected for energy analysis. Using geostatistical interpolation techniques, monthly energy values were extrapolated onto home range grids for the two vervet monkey troops. Grids were stored as database files that were interrogated through GIS simulation models. Using the stochastic processes inherent in Markov chain theory, a series of non-returning random walks were simulated for comparison to original routes taken by the two troops. Results from comparisons of home range energy, day range lengths and areas, shortest route energy to actual route energy, time spent in high energy areas, and energy utilisation from actual and randomly generated routes indicated that the two troops optimize resource energy available to them by adopting flexible foraging strategies. In environments where temporal and spatial variations in habitat structure affect the distribution of resources, it is essential that animals develop optimal foraging strategies to survive. For the two troops investigated, foraging strategies fluctuate between being time minimizers in more heterogeneous environments where resources are abundant, and energy maximisers in homogeneous environments where resources are constrained by low diversity and seasonality. / Environmental Sciences (Department) / D.Litt et Phil (Environmental Management)

Alterações antrópicas nos ecossistemas, em especial a perda e a fragmentação de habitat, são consideradas as principais causas do grande aumento nas extinções de espécies nas últimas décadas. Uma vez que o risco de extinção varia grandemente entre as espécies, os determinantes ecológicos associados à chance de extinção têm sido um tema central e muito debatido na literatura ecológica. Atributos ecológicos relacionados à raridade, como amplitude de nicho e abundância local, e a capacidade de dispersão são recorrentemente citados na literatura como determinantes do risco de extinção local. A partir de dados de ocorrência em fragmentos, matas contínuas e áreas de agricultura, e de captura-recaptura em três grades de 2 ha em mata continua, no Planalto Atlântico Paulista, investigamos o efeito desses três atributos ecológicos sobre o risco de extinção local em espécies de pequenos mamíferos. Utilizamos a abordagem de seleções de modelos e o critério de Akaike (AICc) para avaliar qual das hipóteses existentes na literatura sobre a relação destes atributos com o risco de extinção é mais plausível. Foram realizadas duas seleções de modelos: uma considerando os três atributos para sete espécies; e outra considerando apenas a amplitude de nicho e abundância local para 18 espécies. Os resultados de ambas as seleções indicam a amplitude de nicho como determinante principal do risco de extinção local, que aumenta à medida que a amplitude de nicho diminui. Abundância local apresentou uma importância secundária, com um efeito positivo sobre o risco de extinção, mas que é mais forte para espécies com menor amplitude de nicho. Este resultado é consistente com a idéia de que a abundância local é influenciada pelo grau de especialização e pela capacidade competitiva das espécies, a qual está negativamente relacionada à capacidade de colonização através de uma demanda conflitante. Como a capacidade de dispersão variou pouco entre as espécies estudadas e a capacidade de colonização é determinada também pela taxa de crescimento populacional, é possível que o risco de extinção das espécies de pequenos mamíferos especialistas de habitat seja secundariamente definido pela taxa de crescimento populacional / Anthropogenic disturbances, particularly habitat loss and fragmentation, are considered the main causes of the increased extinction rates observed in the last decades. Since the risk of extinction is extremely variable among species, the ecological determinants of the chance of extinction have been in the center of the debates in the ecological literature. Ecological traits associated with rarity, as niche breadth and local abundance, and dispersal ability are recurrently mentioned in the literature as the main determinants of the risk of local extinction. Using data on occurrence in fragments, continuous forest and areas of agriculture, and on capture-recapture in three 2-ha grids in continuous forest, in the Atlantic Plateau of São Paulo, we investigate the effects of these three ecological traits on the risk of local extinction in small mammals. We used a model selection approach and the Akaike criterion (AICc) to evaluate which of the existing hypotheses on the relationship of these traits with the extinction risk is most plausible. Two model selections were run: one considering the three traits and seven species, and another considering only niche breadth and local abundance and 18 species. The results from both selections point to niche breadth as the main determinant of the risk of local extinction. Local abundance was secondarily important, with a positive effect on extinction risk, which is stronger among the species with smaller niche breadth. This result is consistent with the idea that local abundance is influenced by species degree of ecological specialization and competitive ability, which is negatively related to colonization ability through a trade-off. As dispersal ability varied little among studied species, and colonization ability is also determined by population growth rate, it is possible that the risk of extinction among habitat specialist small mammals is secondarily defined by population growth rate

Dentre os ecossistemas neotropicais, a Mata Atlântica é considerada um dos mais importantes hotspots mundiais. O presente estudo foi conduzido na Reserva Florestal Morro Grande - RFMG (23°39\'-23°48\'S, 47°01\'-46°55\'W), reconhecida pelo seu alto valor para a conservação e está localizada na faixa da Mata Atlântica Ombrófila Densa Montana, Planalto Atlântico do Estado de São Paulo. Presentes na Mata Atlântica, os pequenos mamíferos não-voadores constituem o grupo de mamíferos mais diverso do bioma, e dados recentes relacionados à representatividade ecológica sugerem que os Orizomíneos mais típicos, comuns e abundantes das florestas costeiras e de planalto no estado de São Paulo são Euryoryzomys russatus e Sooretamys angouya. Estes dados ainda indicam que E. russatus e S. angouya, espécies classificadas respectivamente como \"em risco de extinção\" e \"deficiente de dados\" no Estado de São Paulo, respondem diferentemente ao processo de fragmentação, mas não existem informações suficientes disponíveis de história natural e autoecologia para o melhor entendimento destas respostas ao ambiente. O presente projeto avaliou a estrutura populacional, a área de vida, o uso do espaço, a dieta e seleção alimentar exibida por E. russatus e S. angouya na RFMG. O presente trabalho demonstrou que a espécie E. russatus apresenta uma abundância maior do que S. angouya na RFMG e que a temperatura e a disponibilidade de frutos influenciam a variação populacional de E. russatus, enquanto que, para S. angouya, a variação populacional independe dos fatores bióticos (frutos e artrópodes) ou abióticos (temperatura e precipitação) avaliados. Foi verificado uma estratificação vertical no uso do espaço para S. angouya e E. russatus, já que S. angouya apresentou uma locomoção escansorial enquanto E. russatus se apresentou estritamente terrestre. O estudo sugere que a disponibilidade de recursos, o período reprodutivo e o tamanho do indivíduo são os principais fatores que afetam o tamanho de área de vida, o uso do espaço e a locomoção apresentada pelas espécies. Os resultados obtidos pelo estudo da dieta, demonstram de forma conclusiva que E. russatus seleciona alimentos de origem animal, e que S. angouya utiliza muito pouco, ou não utiliza, fontes de origem animal, mas sim fontes vegetais ricas em proteínas e carboidratos, como os frutos. Este estudo possibilitou a compreensão de estratégias de vida adotadas por E. russatus e S. angouya, o que permitiu uma análise comparada da história natural a partir de um contexto evolutivo de organismos que compartilham a mesma escala geográfica e temporal, o que é algo inédito dentro da tribo e da subfamília. / The Atlantic Forest is considered one of the most important global hotspot among the neotropical ecosystems. This study was conducted at the Morro Grande Forest Reserve - MGFR (23°39\'-23°48\'S, 47°01\'-46°55\'W), located in the Dense Montana Atlantic forest, Atlantic Plateau of São Paulo, Brazil, which is known by its high conservation value. The non-flying small mammals are the most diverse group of mammals in the Atlantic forest and recent data suggest Euryoryzomys russatus and Sooretamys angouya as the most common and abundant species in coastal forests and highlands in the state of São Paulo. These data also indicate that E. russatus is classified as endangered and S. angouya as data deficient in the state of São Paulo red list, and these species respond differently to the fragmentation process. This project evaluated the population structure, the living area, the use of space, the diet, and food selection displayed by E. russatus and S. angouya in MGFR. This study demonstrated that the species E. russatus features greater abundance than S. angouya in the study area. Thus, the temperature and the availability of fruits influenced the variation of the population of E. russatus, whereas the population variation of S. angouya showed no dependence of assessed biotic (fruits and arthropods) or abiotic factors (temperature and precipitation). Vertical stratification was observed in the use of space between S. angouya and E. russatus, once S. angouya presented escansorial locomotion and E. russatus was strictly terrestrial. The study suggests that the availability of resources, the reproductive period and the individual overall size are the main factors that affect the home range size, the use of space and mobility presented by the species. The results obtained by the study of diet demonstrate conclusively that E. russatus selects animal origin and S. angouya uses very little or does not use animal food resources, choosing plant sources rich in protein and carbohydrates, such as fruits. This study brought a better understanding of the life strategies adopted by E. russatus and S. angouya, which allowed the comparison of natural history of organisms that share the same spatial and temporal scale under an evolutionary perspective, which is a completely new approach within the tribe and subfamily.

Dentre os ecossistemas neotropicais, a Mata Atlântica é considerada um dos mais importantes hotspots mundiais. O presente estudo foi conduzido na Reserva Florestal Morro Grande - RFMG (23°39\'-23°48\'S, 47°01\'-46°55\'W), reconhecida pelo seu alto valor para a conservação e está localizada na faixa da Mata Atlântica Ombrófila Densa Montana, Planalto Atlântico do Estado de São Paulo. Presentes na Mata Atlântica, os pequenos mamíferos não-voadores constituem o grupo de mamíferos mais diverso do bioma, e dados recentes relacionados à representatividade ecológica sugerem que os Orizomíneos mais típicos, comuns e abundantes das florestas costeiras e de planalto no estado de São Paulo são Euryoryzomys russatus e Sooretamys angouya. Estes dados ainda indicam que E. russatus e S. angouya, espécies classificadas respectivamente como \"em risco de extinção\" e \"deficiente de dados\" no Estado de São Paulo, respondem diferentemente ao processo de fragmentação, mas não existem informações suficientes disponíveis de história natural e autoecologia para o melhor entendimento destas respostas ao ambiente. O presente projeto avaliou a estrutura populacional, a área de vida, o uso do espaço, a dieta e seleção alimentar exibida por E. russatus e S. angouya na RFMG. O presente trabalho demonstrou que a espécie E. russatus apresenta uma abundância maior do que S. angouya na RFMG e que a temperatura e a disponibilidade de frutos influenciam a variação populacional de E. russatus, enquanto que, para S. angouya, a variação populacional independe dos fatores bióticos (frutos e artrópodes) ou abióticos (temperatura e precipitação) avaliados. Foi verificado uma estratificação vertical no uso do espaço para S. angouya e E. russatus, já que S. angouya apresentou uma locomoção escansorial enquanto E. russatus se apresentou estritamente terrestre. O estudo sugere que a disponibilidade de recursos, o período reprodutivo e o tamanho do indivíduo são os principais fatores que afetam o tamanho de área de vida, o uso do espaço e a locomoção apresentada pelas espécies. Os resultados obtidos pelo estudo da dieta, demonstram de forma conclusiva que E. russatus seleciona alimentos de origem animal, e que S. angouya utiliza muito pouco, ou não utiliza, fontes de origem animal, mas sim fontes vegetais ricas em proteínas e carboidratos, como os frutos. Este estudo possibilitou a compreensão de estratégias de vida adotadas por E. russatus e S. angouya, o que permitiu uma análise comparada da história natural a partir de um contexto evolutivo de organismos que compartilham a mesma escala geográfica e temporal, o que é algo inédito dentro da tribo e da subfamília. / The Atlantic Forest is considered one of the most important global hotspot among the neotropical ecosystems. This study was conducted at the Morro Grande Forest Reserve - MGFR (23°39\'-23°48\'S, 47°01\'-46°55\'W), located in the Dense Montana Atlantic forest, Atlantic Plateau of São Paulo, Brazil, which is known by its high conservation value. The non-flying small mammals are the most diverse group of mammals in the Atlantic forest and recent data suggest Euryoryzomys russatus and Sooretamys angouya as the most common and abundant species in coastal forests and highlands in the state of São Paulo. These data also indicate that E. russatus is classified as endangered and S. angouya as data deficient in the state of São Paulo red list, and these species respond differently to the fragmentation process. This project evaluated the population structure, the living area, the use of space, the diet, and food selection displayed by E. russatus and S. angouya in MGFR. This study demonstrated that the species E. russatus features greater abundance than S. angouya in the study area. Thus, the temperature and the availability of fruits influenced the variation of the population of E. russatus, whereas the population variation of S. angouya showed no dependence of assessed biotic (fruits and arthropods) or abiotic factors (temperature and precipitation). Vertical stratification was observed in the use of space between S. angouya and E. russatus, once S. angouya presented escansorial locomotion and E. russatus was strictly terrestrial. The study suggests that the availability of resources, the reproductive period and the individual overall size are the main factors that affect the home range size, the use of space and mobility presented by the species. The results obtained by the study of diet demonstrate conclusively that E. russatus selects animal origin and S. angouya uses very little or does not use animal food resources, choosing plant sources rich in protein and carbohydrates, such as fruits. This study brought a better understanding of the life strategies adopted by E. russatus and S. angouya, which allowed the comparison of natural history of organisms that share the same spatial and temporal scale under an evolutionary perspective, which is a completely new approach within the tribe and subfamily.