Les anomalies congénitales du rein et du tractus urinaire (CAKUT) sont l’une des malformations les plus fréquentes chez l’homme, et résultent d’un défaut du programme de dévelopement des organes. La famille de gènes Sox code pour 20 facteurs de transcription qui assurent des fonctions multiples et essentielles pendant l’organogenèse chez l’homme et la souris. Nous avons précedemment montré que Sox8 et Sox9 sont nécessaires au branchement de l’uretère, et la perte de ces gènes résulte en une agénésie rénale. L’objectif de ce projet de thèse était de caractériser le role des gènes Sox-C (Sox4/11/12) in vivo chez la souris. L’analyse des patrons d’expression a révélé que Sox4 , Sox11 et Sox12 sont co-exprimés dans les cellules progénitirices des néphrons, destinées à subir une transition mésenchyme epithelium (MET) pour former des vésicules qui s'allongent pour aboutir au néphron fonctionnel. L’analyse phénotypique a révélé une redondance fonctionnelle entre Sox4 et Sox11 pendant les processus de MET et de maturation des néphrons: les double mutants développent une hypodysplasie rénale dûe à une réduction dramatique du nombre et de la taille des néphrons. Le pool de progéniteurs de néphrons est intact chez ces mutants mais incapable de s’engager dans la nephrogenèse, probablement dû à un changement d’identité cellulaire. Par ailleurs, en l’absence de Sox11, des bourgeons uretéraux ectopiques se forment, conduisant à des reins duplex, phénotype présent dans une proportion de patients CAKUT. De manière importante, nous avons identifié une série de variants SOX11 dans une cohorte de patients CAKUT, suggérant l'implication de mutations SOX11 dans cette maladie chez l'homme. / Congenital abnormalities of the kidney and the urinary tract (CAKUT) belong to the mostcommon birth defects in human and are caused by defects in the program governing organ development. The Sox gene family encodes 20 transcription factors that ensure multiple and essential functions during mouse and human organogenesis. We have previously shown that the homologous genes Sox8 and Sox9 are required for the branching process of the ureter and their loss results in renal agenesis. In this thesis project, we aimed to identify and characterize the role of the Sox-C genes (Sox4/11/12), in vivo using mouse models. Expression analysis revealed that Sox4, Sox11 and Sox12 are coexpressed in the self-renewing nephron precursors cells that are destined to undergo mesenchyme-to-eptihelial transition (MET) to form vesicles that elongate to give rise to the functional nephrons. Phenotypical analysis revealed a functional redundancy between Sox4 and Sox11 in MET and nephron maturation processes: double mutants display renal hypodysplasia, due to a dramatic reduction in the number and size of nephrons. The nephron precursor pool is intact in these mutants but unable to commit to nephrogenesis, probably because of a cell identity change. In addition, in the absence of Sox11, ectopic ureteric buds form, leading to duplex kidneys, a phenotype found in a proportion of CAKUT patients. Importantly, mutation analysis of a cohort suffering from CAKUT syndrome identified a series of SOX11 variants, thus suggesting an involvement of SOX11 mutations in this human disease.

京都大学 / 0048 / 新制・課程博士 / 博士(医学) / 甲第18503号 / 医博第3923号 / 新制||医||1005(附属図書館) / 31389 / 京都大学大学院医学研究科医学専攻 / (主査)教授 山下 潤, 教授 斎藤 通紀, 教授 小川 修 / 学位規則第4条第1項該当 / Doctor of Medical Science / Kyoto University / DFAM

Nephrons develop from a specialized group of mesenchyme cells known as the nephron progenitors. Nephron progenitors can very dynamic as they can self-renew, migrate, and change their cell morphology. These alterations are essential for orientating and organizing select cells for progression through various stages of nephrogenesis. However, the underlying mechanisms that drive these dynamic morphological changes are not fully understood. Shroom3 is an actin-binding protein that regulates cell shape changes by modulating the actin cytoskeleton. In mice and humans, mutations in Shroom3 are associated with poor nephron function and chronic kidney disease. Despite these findings, the underlying mechanisms of Shroom3 function and how genetic mutations contribute to abnormal nephron formation are unclear. Here, we investigated functional roles for Shroom3 in the nephron progenitor population by analyzing E13.5 and E18.5 Wildtype and Shroom3 deficient mice (termed Shroom3-/-). First, using in-situ hybridization (ISH) and immunofluorescence (IF), we confirm Shroom3 expression in select nephron progenitors. Next, we demonstrated abnormal cell shape and abnormal nephron progenitor cell clustering using H&E staining and Pax2 immunofluorescence. We showed a reduction in nephron progenitor cell numbers and decreased cell length in E13.5 Shroom3-/- kidneys. Using markers of cell orientation, we discovered altered cell orientation in some but not all nephron progenitor cells. While analyzing the cell cytoskeleton, we also demonstrated the abnormal distribution of F-actin in Shroom-/- nephron progenitors. Lastly, immunofluorescence and transmission electron microscopy analysis of Shroom3-/- nephron progenitors confirmed the abnormal shape and reduced filopodia-like thin actin-based membrane protrusions. Our findings conclude that Shroom3 is essential for maintaining and regulating nephron progenitor cell morphology. Taken together, these findings could help explain why Shroom3 mutations are highly associated with kidney disease. / Thesis / Master of Science in Medical Sciences (MSMS)

No description available.

The metanephric kidney consists of two types of epithelia; the Wolffian duct-derived ureteric bud and the nephrogenic components that originate from mesenchymal-toepithelial transitions in the metanephric mesenchyme. The ureteric bud forms when inductive signals from the metanephric mesenchyme stimulates the evagination of an epithelial tube from the Wolffian duct into the mesenchyme. Reciprocal signalling between the ureteric bud and the metanephric mesenchyme regulates the branching of the ureteric bud and the induction of nephron formation. Inductive and inhibitory signalling of ureteric bud growth and branching has been shown by several protein families, however, the mechanical aspects of ureteric bud branching and nephrogenesis are largely unknown. I investigated the roles of Rac1-GTPase and Rho-kinase during kidney development. These proteins are important regulators of the cytoskeleton where Rac1 is a promoter of actin filament polymerisation and Rho-kinase directly stimulates the formation and contraction of actin-myosin stress fibres. Using a cell-permeable inhibitor, Rac1 was inhibited with no effects on nephron formation or subsequent segmentation and patterning. Inhibition of active Rac1 significantly reduced the level of ureteric bud branching and also resulted in lower proliferation rates. Rho-kinase was similarly targeted using two inhibitors. Rho-kinase inhibition had important effects on nephron formation and nephron maturation. Inhibition of Rhokinase resulted in decreased levels of nephron formation and severely morphologically abnormal nephrons. The formation of apical-basal polarity was disturbed as was the development of the visceral and parietal epithelia; precursors of the renal corpuscle. Inhibition of Rho-kinase led to abnormal formation of the proximal-distal axis and abnormal segmentation of the nephron. The effects of Rho-kinase inhibition were partially mimicked by direct targeting of actin-myosin contractions using a myosin-ATPase inhibitor. This demonstrated that Rho-kinase is necessary during multiple stages of nephrogenesis and maturation, at least in part, as a result of its ability to regulate actin-myosin contraction. These results show that Rac1 and Rho-kinase play important roles during several aspects of kidney development and highlights the significance of further investigating the mechanisms involved during kidney organogenesis.

acase@tulane.edu

The mammalian kidney and reproductive systems both derive from a common embryological origin, the intermediate mesoderm. Abnormal intermediate mesoderm development can result in congenital abnormalities of the urogenital system, yet the molecular mechanisms that govern intermediate mesoderm development are incompletely defined. The spatial and temporal expression of the proteins BMP2 and 4 and their receptor ALK3, in urogenital tissue, suggests a function for BMP-ALK3 signaling in the intermediate mesoderm. It was found that Alk3IM null kidneys display renal hypoplasia, associated with a decrease in kidney size and nephron number. The phenotype of renal hypoplasia in Alk3IM nulls was associated with early decreased number of developing nephron structures and secondary defects in branching morphogenesis. While neither apoptosis nor cell proliferation differed in metanephric mesenchyme cells in Alk3IM nulls, markers of renal progenitor cells were decreased in mutant animals. It was observed that Alk3 expression in the intermediate mesoderm also controls mesonephric tubule number. Alk3IM nulls had fewer mesonephric tubules and fewer derivative Leydig cells. The reduction in Leydig cells resulted in decreased levels in serum testosterone and defects in seminal vesicle formation and fertility. Alk3 expression was also required for normal development of the corpus epididymis. The morphological defects in nephrogenesis were associated with decreased phospho-p38 MAPK expression and in the testis with decreased Phospho-SMAD1/5/8. These results elucidated a requirement for Alk3 signaling in controlling progenitor cells derived from the intermediate mesoderm.

The mammalian kidney and reproductive systems both derive from a common embryological origin, the intermediate mesoderm. Abnormal intermediate mesoderm development can result in congenital abnormalities of the urogenital system, yet the molecular mechanisms that govern intermediate mesoderm development are incompletely defined. The spatial and temporal expression of the proteins BMP2 and 4 and their receptor ALK3, in urogenital tissue, suggests a function for BMP-ALK3 signaling in the intermediate mesoderm. It was found that Alk3IM null kidneys display renal hypoplasia, associated with a decrease in kidney size and nephron number. The phenotype of renal hypoplasia in Alk3IM nulls was associated with early decreased number of developing nephron structures and secondary defects in branching morphogenesis. While neither apoptosis nor cell proliferation differed in metanephric mesenchyme cells in Alk3IM nulls, markers of renal progenitor cells were decreased in mutant animals. It was observed that Alk3 expression in the intermediate mesoderm also controls mesonephric tubule number. Alk3IM nulls had fewer mesonephric tubules and fewer derivative Leydig cells. The reduction in Leydig cells resulted in decreased levels in serum testosterone and defects in seminal vesicle formation and fertility. Alk3 expression was also required for normal development of the corpus epididymis. The morphological defects in nephrogenesis were associated with decreased phospho-p38 MAPK expression and in the testis with decreased Phospho-SMAD1/5/8. These results elucidated a requirement for Alk3 signaling in controlling progenitor cells derived from the intermediate mesoderm.

Abstract For decades, the mammalian kidney has served as a model system for studying developmental processes, such as induced epithelialization, branching morphogenesis, and cell differentiations. The possibility to recapitulate and follow the renal organogenesis ex vivo in organ culture set-ups has provided a large amount of molecular and cellular information about sequential events during development. However, certain limitations remain when combining traditional organ culture set-ups with modern molecular technology. This thesis seeks to address these disadvantages. In the experimental part of the thesis, the traditional organ culture set-ups were studied, modified, and optimized to meet the needs of functional genetic screening. First, the traditional transfilter- induced nephrogenesis was characterized with a panel of nephron segment specific markers to reveal the differentiation level of in vitro developing mouse renal tissue. A comprehensive genome wide time course microarray analysis was also performed to in vitro- induced metanephric mesenchyme. Next, to improve the accessibility of genetic tools into the three- dimensional organ in culture, the classic kidney culture set-ups were modified to tolerate dissociation and re-aggregation before the induction of nephrogenesis. This step was achieved with the aid of preservative growth factors offering a 24- hour window to manipulate the genetic and cellular composition of the explant. The dissociation and re-aggregation per se had not particular effect on the progress of the nephron differentiation. Demonstrations of the addition and removal of cells, as well as a virus vector mediated gene knock in and knock down are presented. The gene expression data, together with the novel organ manipulation and culture techniques presented in this thesis, provide a useful guide and specific tools to further characterize the details of nephron development and differentiation in functional manner. / Tiivistelmä Nisäkkäiden munuainen on toiminut vuosikymmeniä mallielimenä tutkittaessa kehitysbiologisia tapahtumasarjoja, kuten epitelisaatiota, haaroittumismorfologiaa sekä solujen erilaistumista. Munuaisaihioita voidaan viljellä laboratorio-olosuhteissa, jolloin kehityksen aikaisia muutoksia päästään seuraamaan lähes reaaliaikaisesti. Perinteisten kudosviljelytekniikoiden tarjoamat mahdollisuudet solujen molekulaariseen muokkaukseen ovat kuitenkin varsin rajalliset. Tässä väitöskirjassa esitettävät tulokset pyrkivät osaltaan vähentämään näitä rajoitteita. Väitöskirjan kokeellisessa osassa tarkastellaan lähemmin klassista munuaiskudosviljelyä sekä esitetään siihen tehtyjä optimointeja, joiden avulla kudosviljelyä pyritään hyödyntämään geenien toiminnan tutkimuksessa. Aluksi perinteisellä tavalla reikäisen kalvon läpi indusoitu nefroni karakterisoitiin tarkasti hyödyntäen useita erilaistumista osoittavia merkkimolekyylejä. Lisäksi samalla tekniikalla tuotettujen munuaiskudosviljelmien geeniekspressiota tutkittiin mikrosiruanalyysillä. Klassisia kudosviljelytekniikoita muokattiin soveltuvammaksi moderneille geneettisille työkaluille. Munuaiskudos hajotettiin ensin solususpensioksi, jonka jälkeen solut muodostivat uudelleen kolmiulotteisen, kudosmaisen rakenteen. Hyödyntämällä suojaavia kasvutekijöitä, hajotus kyettiin tekemään jo ennen nefronien muodostumisen alkua. Näin saavutettin 24 tunnin aikaikkuna indusoimattoman kudoksen geneettiselle muokkaukselle. Väitöskirjassa esitelläänkin demonsrtaatiot solujen lisäämisestä ja poistamisesta sekä virusvälitteisestä geenin aktivoinnista ja hiljennyksestä hyödyntäen uutta kudosmanipulaatio ja –vilejelytekniikkaa. Nefronin kehityksen aikaisen geeniekspression kartoitus sekä tässä tutkimuksessa kehitetyt uudet kudosmanipulaatio ja -viljelytekniikat tarjoavat yhdessä työkaluja molekyylitason yksityiskohtaiseen tutkimiseen.

Chez le xénope, le pronéphros constitue le rein fonctionnel du têtard. Le sang est filtré par le glomus et l'urine est modifiée lors de son transit dans le tubule. Au cours de ma thèse, nous avons analysé l'expression des quatre membres de la famille pou3f au cours du développement embryonnaire chez le xénope. Nous avons montré que leur expression neurale, otique ou encore épidermique est conservée entre le xénope et la souris, de même que l'expression rénale de pou3f3. Nous avons également mis en évidence une expression pronéphrique de pou3f4. Nous avons ensuite analysé le rôle de Pou3f4 au cours du développement du pronéphros. La perte de fonction de Pou3f4 entraine des défauts de différenciation terminale du tubule intermédiaire et distal. Sa surexpression aboutit au contraire à une augmentation de l'expression des marqueurs de différenciation slc12a1 et clcnkb1. Les morphants Pou3f4 présentent aussi des défauts de morphogenèse du tubule intermédiaire caractérisés par des circonvolutions réduites. Nos résultats montrent que Pou3f4 contrôle l'expression de l'ephrine efnA3 dans le tubule pronéphrique. La perte de fonction d'EfnA3 conduit à des défauts de morphogenèse du tubule, suggérant que Pou3f4, par la régulation de l'expression d'efnA3, est impliqué dans les mouvements cellulaires nécessaires à l'élongation antérieure du tubule. Enfin, nous avons observé que pou3f3 et pou3f4 ne se régulent pas l'un de l'autre. Nous avons en revanche mis en évidence une redondance fonctionnelle de ces gènes dans la morphogenèse et la différenciation du tubule puisque la perte de fonction combinée de Pou3f3 et Pou3f4 entraine un phénotype plus sévère que chaque simple perte de fonction. / In Xenopus, pronephros is the functional kidney at tadpole stage. The blood is filtrated by the glomus and the urine is modifed all along the tubule. Pou3f3 is required for intermediate and distal tubule formation in mouse. During my PhD, we have analyzed the expression of the four pou3f genes during Xenopus embryonic development. We found that neural, otic, or epidermic expression of the various pou3f genes is conserved between Xenopus and mouse. Pou3f3 expression in the pronephros is similar to that observed in mouse. We futher showed for the first time pou3f4 expression in the developping kidney. Then, we analyzed the role of Pou3f4 during pronephros development. Pou3f4 depletion inhibits the expression of terminal differentiation marker genes in the intermediate and distal tubule. Pou3f4 upregulates the expression of slc12a1 and clcnkb1 in the tubule. Moreoer, we found that Pou3f4 loss of function leads to intermediate tubule morphogenesis defects. While ephrin signaling pathway is largely described as playing crucial role in cellular movement, Pou3f4 controls efnA3 expression in the intermediate and distal tubule. EfnA3 depletion phenocopies Pou3f4 loss of function, suggesting that Pou3f4, by regulationg efnA3 expression, is implicated in cell movements necessary for anterior elongation of the tubule. Finally, we find that pou3f3 and pou3f4 do not regulate each other expression. However, they act redundantly in pronephros development since the combined Pou3f3 and Pou3f4 loss of function results in a more severe phenotype than each loss of function alone.