In this study, the hydrolytic kinetics of mixtures of cotton gin waste (CGW) and recycled paper sludge (RPS) at various initial enzyme concentrations of Spezyme AO3117 and Novozymes NS50052 was investigated. The experiments showed that the concentrations of reducing sugars and the conversions of the mixtures increased with increasing initial enzyme concentration. The reducing sugar concentration and conversion of the mixture of 75% CGW and 25% RPS were higher than those of the mixture of 80% CGW and 20% RPS. The conversion of the former could reach 73.8% after a 72-hour hydrolysis at the initial enzyme loading of 17.4 Filter Paper Unit (FPU)/g substrate. A three-parameter kinetic model with convergent property based on enzyme deactivation and its analytical expression were derived. Using nonlinear regression, the parameters of the model were determined from the experimental data of hydrolytic kinetics of the mixtures. Based on this kinetic model of hydrolysis, two profit rate models, representing two kinds of operating modes with and without substrate recycling, were developed. Using the profit rate models, the optimal enzyme loading and hydrolytic time could be predicted for the maximum profit rate in ethanol production according to the costs of enzyme and operation, enzyme loading, and ethanol market price. Simulated results from the models based on the experimental data of hydrolysis of the mixture of 75% CGW and 25% RPS showed that use of a high substrate concentration and an operating mode with feedstock recycle could greatly increase the profit rate of ethanol production. The results also demonstrated that the hydrolysis at a low enzyme loading was economically required for systematic optimization of ethanol production. The development of profit rate model points out a way to optimize a monotonic function with variables, such as enzyme loading and hydrolytic time for the maximum profit rate. The study also investigated the ethanol production from the steam-exploded mixture of 75 wt% cotton gin waste and 25 wt% recycled paper sludge at various influencing factors, such as enzyme concentration, substrate concentration, and severity factor, by a novel operating mode: semi-simultaneous saccharification and fermentation (SSSF) consisting of a pre-hydrolysis and a simultaneous saccharification and fermentation (SSF). Four cases were studied: 24-hour pre-hydrolysis + 48-hour SSF (SSSF 24), 12-hour pre-hydrolysis + 60-hour SSF (SSSF 12), 72-hour SSF, and 48-hour hydrolysis + 12-hour fermentation (SHF). SSSF 24 produced higher ethanol concentration, yield, and productivity than the other operating modes. The higher temperature of steam explosion favored of ethanol production, but the higher initial enzyme concentration could not increase the final ethanol concentration though the hydrolytic rate of the substrate was increased. A mathematical model of SSSF, which consisted of an enzymatic hydrolysis model and a SSF model including four ordinary differential equations that describe the changes of cellobiose, glucose, microorganism, and ethanol concentrations with respect to residence time, was developed, and was used to simulate the data for the four components in the SSSF processes of ethanol production from the mixture. The model parameters were determined by a MATLAB program based on the batch experimental data of the SSSF. The analysis to the reaction rates of cellobiose, glucose, cell, and ethanol using the model and the parameters from the experiments showed that the conversion of cellulose to cellobiose was a rate-controlling step in the SSSF process of ethanol production from cellulose. / Ph. D.

Fischer-Tropsch Synthesis (FTS) is a promising technology for the production of ultra-clean fuels and chemical feedstocks from biomass, coal, or natural gas. Iron catalysts are ideal for conversion of coal and biomass. However, precipitated iron catalysts used in slurry-bubble column reactors suffer from high attrition resulting in difficulty separating catalysts from product and increased slurry viscosity. Thus, development of an active and selective-supported iron catalyst to manage attrition is needed. This thesis focuses on the development of a supported iron catalyst and kinetic models of FTS on the catalyst using advanced statistical methods for experimental design and analysis. A high surface area alumina, modified by the addition of approximately 2 wt% lanthanum, was impregnated with approximately 20 wt% Fe and 1% Pt in a two step procedure. Approximately 10 wt% Fe and 0.5 wt% Pt was added in each step. The catalyst had a CO uptake of 702 μmol/g, extent of reduction of 69%, and was reduced at 450°C. The catalyst was stable over H2 partial pressures of 4-10 atm, CO partial pressures of 1-4 atm, and temperatures of 220-260°C. Weisz modulus values were less than 0.15. A Langmuir-Hinshelwood type rate expression, derived from a proposed FTS mechanism, was used with D-optimal criterion to develop experiments sequentially at 220°C and 239°C. Joint likelihood confidence regions for the rate expression parameters with respect to run number indicate rapid convergence to precise-parameter estimates. Difficulty controlling the process at the designed conditions and steep gradients around the D-optimal criterion resulted in consecutive runs having the same optimal condition. In these situations another process condition was chosen to avoid consecutive replication of the same process condition. A kinetic model which incorporated temperature effects was also regressed. Likelihood and bootstrap confidence intervals suggested that the model parameters were precise. Histograms and skewness statistics calculated from Bootstrap resampling show parameter-effect nonlinearities were small.

Le moteur HCCI pourrait être une alternative intéressante aux procédés de combustion conventionnels. Néanmoins, le contrôle de la combustion reste difficile dans ce moteur car, contrairement au moteur essence et Diesel, celui-ci est directement contrôlé par la chimie d’oxydation du combustible. Une connaissance très précise des modèles cinétiques détaillés de l’oxydation du carburant est donc indispensable pour pouvoir contrôler ce mode de combustion. L’objectif de cette thèse était de développer et valider expérimentalement des modèles cinétiques d’oxydation à haute température de 3 molécules modèles du gazole en utilisant un brûleur à flamme plate laminaire comme dispositif expérimental. Cette étude présente de nouveaux résultats expérimentaux obtenus sur une flamme laminaire pauvre pré mélangée de méthane ensemencée respectivement avec du n butylbenzène, du n propylcyclohexane et de l’indane. Un modèle cinétique d’oxydation a été développé et validé à haute température pour le n butylbenzène et un autre a été validé en flamme pour le n propylcyclohexane. Dans l’ensemble, ces modèles ont permis de simuler correctement les profils de la plupart des produits mesurés en flamme. Par ailleurs, un modèle cinétique qualitatif d’oxydation pour l’indane a été proposé / The HCCI engine could be an interesting alternative to conventional combustion processes. However, the control of the combustion remains difficult in this engine because, unlike the gasoline and diesel engine, it is directly related to the chemical oxidation of fuel. The development of accurate detailed kinetic models of the oxidation of fuel is therefore essential to control this mode of combustion. The aim of this PhD was to develop and experimentally validate high temperature kinetic oxidation models for 3 molecules representative of diesel fuel by using a flat flame burner experimental device. This study presents new experimental results obtained in a lean laminar premixed methane flame seeded respectively with n butylbenzene, n propylcyclohexane and indane. A kinetic oxidation model was developed and validated at high temperature for n-butylbenzene and another one was validated in flame for n propylcyclohexane. Overall, the models correctly simulated the profiles of most products measured in the flames. Moreover, a qualitative kinetic model for the oxidation of indane has been proposed

The present dissertation consists of two thematically related parts. The first one (includes two publications) deals with the study of chemical pro- cesses and spectroscopy of highly reactive particles produced in the discharge plasma. This part includes the analysis of ro-vibronic CN radical transitions in the infrared region and the study of chemical reactions in pulsed dischar- ges. The discharge was used as a tool for research of decomposition of simple precursors (acetonitrile, formamide and BrCN) and the subsequent formation of intermediates and reaction products in plasma. The obtained experimental results were interpreted using a numerical model developed in context of this work and used to simulate the kinetics of the studied systems. The second part (includes seven works) is aimed at high-resolved spectro- scopy of metals in the ablation plasma. A total of six different metals were studied: Au, Ag, Cu, Cs, K and Na. The main motivation for spectroscopic research on metals in the infrared region is to obtain information on atomic metals transitions, which are particularly important for astronomical identi- fication of lines in the spectra of stars and their spectroscopic assignments. Each publication contains a summary of the analyzed atomic transitions of which a considerable portion had not...

Diese Dissertation befasst sich mit der Dynamik von Lipidtropfen (LDs), die der Speicherung von Lipiden (hauptsächlich Triacylglycerol, TAG) dienen. Das epidemische Auftreten von Adipositas und der sogenannten Fettleber (Steatose) hat das wissenschaftliche Interesse an der Regulation der zellulären Speicherung in LDs stark beflügelt. Es gibt inzwischen zahlreiche Publikationen zu einzelnen Aspekten der Bildung, des Wachstums und des Abbaus von Lipidtropfen. Ein detailliertes mathematisches Modell, das diese Einzelergebnisse in ein konsistentes Bild zusammenfügt, gibt es allerdings nicht. Die Aufstellung, Validierung und Anwendung eines umfassenden mathematischen Modells der Dynamik von LDs steht daher im Mittelpunkt dieser Arbeit. Dieses Modell umfasst unter anderem die Aufnahme von freien Fettsäuren aus dem Blutplasma, die Veresterung zu TAG, die Bildung, das Wachstum und die Lipolyse von Lipidtropfen, die durch etliche regulatorische Oberflächenproteine (ROPs) gesteuert werden. Eine wesentliche Frage im Zusammenhang mit der Entstehung einer Fettleber gilt den Mechanismen, die den heterogenen Fetteinlagerungen in der Leber zugrunde liegen. Eigene Experimente mit humanen Hepatomzellen (PLC) zeigten, dass eine Heterogenität in der TAG-Speicherung auch in isolierten Zellen existiert, wenn man sie einer Fettsäurebelastung unterwirft. Modellsimulationen zeigen, dass Schwankungen in der Expression zentraler regulatorischer Proteine bereits eine Heterogenität bis zu 50% erklären können. Unter der Annahme, dass eine solche Variabilität der Genexpression auch im intakten Organ vorliegt, prognostiziert das Modell eine Variation im TAG-Gehalt einzelner Zellen um einen Faktor drei bis sechs. Zusammenfassend ist zu sagen, dass der Modellansatz zahlreiche experimentelle Ergebnisse von einzelnen Prozessen im zellulären TAG-Metabolismus und im Metabolismus der LD-Dynamik in ein konsistentes, neuartiges und dynamisches Modell eines metabolischen Netzwerks integriert. / This dissertation occupies with the dynamics of lipid droplets (LDs) serving as lipid deposit transporting, mainly triacylglycerol (TAG). The epidemic occurrence of obesity and steatosis has inspired strongly the scientific interest in regulation of hepatic TAG accumulation. There are now numerous publications regarding individual aspects of formation, maturation and lipolysis of LDs. However, a detailed computational model putting together this fractional knowledge is lacking so far. I focus on development, validation and implementation a kinetic model encompassing the pathways of the fatty acids (FFA) and TAG metabolism and the main molecular processes governing the dynamics of LDs. Experiments with primary human hepatocytes incubated with an excess of FFA show a large heterogeneity of TAG content and LD size distribution. Intriguingly, a large cell-to-cell heterogeneity with respect to the number and size of LDs has been found in various cell types. These findings suggest that the extent of cellular lipid accumulation is not only determined by the imbalance between lipid supply and utilization but also by variations in the expression of regulatory surface proteins and metabolic enzymes. To better understand the relative regulatory impact of individual processes involved in the cellular TAG turnover we varied randomly the expression of RSPs and metabolic enzymes. A random fold change by a factor of about 2 in the activity of RSPs was sufficient to reproduce the large diversity of droplet size distributions. Under the premise that the same extent of variability of RSPs holds for the intact organ, our model predicts variations in the TAG content of individual hepatocytes by a factor of about three to six depending on the nutritional regime. Taken together, our modeling approach integrates numerous experimental findings on individual processes in the cellular TAG metabolism and LD dynamics metabolism to a consistent state-of-the-art dynamic network model.

La NADPH cytochrome P450 réductase (CPR) est une flavoprotéine multidomaines appartenant à la famille des diflavines réductases et un des composants essentiels du système redox des cytochromes P450. La CPR est formée de deux domaines catalytiques contenant des groupements prosthétiques FAD et FMN et d'un domaine de connexion. Le domaine FAD reçoit deux électrons du NADPH et les transfère un par un au domaine FMN, qui, à son tour, les transfère aux accepteurs. Le transfert d’électron du FMN vers les accepteurs nécessite un déplacement du domaine FMN par rapport au reste de la molécule. Au fils des années, les études structurales menées sur la CPR ont mis en évidence la réorganisation structurale et l’arrangement des domaines dans cette protéine. Cependant, les résultats de ces analyses ne fournissent pas d’informations concernant la vitesse à laquelle les mouvements des domaines de la CPR s’effectuent et n’incluent toujours pas les paramètres qui induisent le changement conformationnel ainsi que l'influence de ces changements sur l’activité catalytique de la CPR.Le projet de cette thèse a consisté à apporter de nouveaux éléments de compréhension sur la relation entre les changements conformationnels de la CPR et son cycle catalytique. La première partie de ce travail a porté sur le développement de stratégies de préparation au marquage des domaines catalytiques de la CPR, destinés à l’étude dynamique de cette protéine par le FRET. Différentes stratégies ont été envisagées parmi lesquelles l’incorporation de p-acétyle phénylalanine sur des positions définies dans la CPR. La deuxième partie de ce travail est consacrée à l’étude dynamique de la CPR via des techniques de RMN et SAXS combinées à des approches biochimiques. Les expériences menées ont permis de caractériser en solution et en absence de NaCl, la présence d’un état rigide, globulaire en conformation fermée dans laquelle les domaines FMN et FAD sont maintenus « verrouillés » par des interactions à l’interface entre ces deux domaines. L’augmentation de la concentration en NaCl permet une transition de cet état « verrouillé » vers un état plus ouvert pour lequel il n’y a plus d’interface entre les domaines FAD et FMN. L’état « déverrouillé » de la CPR correspond à un équilibre dynamique entre un ensemble de conformations en échange rapide. Cet équilibre est contrôlé par la force ionique et l’activité catalytique de la CPR est maximale lorsque les états verrouillés et déverrouillés sont également peuplés. Le modèle cinétique proposé par nos études a permis de mettre en évidence un lien direct entre la dynamique des domaines et l’activité du transfert d’électron au cours de cycle catalytique de la CPR. / NADPH cytochrome P450 reductase (CPR) is a multidomain flavoprotein that belongs to the diflavines reductase family. It is an essential component of redox system delivering electrons for cytochrome P450. CPR is composed of two catalytic domains containing FAD and FMN prosthetic groups and a connecting domain. FAD domain receives two electrons from NADPH and transfers them one by one to the FMN domain, which in turn transfers them to the acceptor. The electron transfer from FMN to the acceptor requires a large domain movement. Over the years, structural studies of CPR have highlighted the reorganization and arrangement of domains in this protein. However, the results of these analyses do not provide any information about how fast the domains movements takes place in CPR, and do not always include the parameters that induce conformational change as well as influence of those changes on the catalytic activity of the CPR. This thesis aims to bring new elements of comprehension on the relationship between conformational changes in CPR and its catalytic cycle. The first part of the work concerned the development of strategies to label the catalytic domains of CPR, a prerequisite for the dynamic study of this protein by FRET. Different strategies have been proposed including the incorporation of p-acetyl phenylalanine at defined positions in CPR. The second part of this work is devoted to the dynamic study of CPR through a combined SAXS, NMR and biochemical approaches. The experiments conducted allowed to characterize the presence of a rigid and globular state of closed conformation for CPR, in solution and in the absence of NaCl. In this conformation the FMN and FAD domains are kept "locked" by interface interactions between these two domains. Increasing the NaCl concentration permits the transition from the "locked" stats to an open conformation in which there is no more interface between the FAD and FMN domains. The "unlocked" state of CPR is a dynamic equilibrium between ensembles of conformations in fast exchange. This equilibrium is controlled by the ionic strength and CPR presents its maximum catalytic activity when the locked and unlocked states are equally populated. We proposed a kinetic model which allows demonstrating a direct link between the domain movement and electron transfer activity during the catalytic cycle of CPR.

Made available in DSpace on 2014-12-17T15:42:04Z (GMT). No. of bitstreams: 1 CamilaRML_DISSERT.pdf: 3932876 bytes, checksum: 4cacf8f7fc64136e2ecb15a917a88b97 (MD5) Previous issue date: 2013-01-25 / Universidade Federal do Rio Grande do Norte / Among the polymers that stand out most in recent decades, chitosan, a biopolymer with physico-chemical and biological promising properties has been the subject of a broad field of research. Chitosan comes as a great choice in the field of adsorption, due to their adsorbents properties, low cost and abundance. The presence of amino groups in its chain govern the majority of their properties and define which application a sample of chitosan may be used, so it is essential to determine their average degree of deacetylation. In this work we developed kinetic and equilibrium studies to monitor and characterize the adsorption process of two drugs, tetracycline hydrochloride and sodium cromoglycate, in chitosan particles. Kinetic models and the adsorption isotherms were applied to the experimental data. For both studies, the zeta potential analyzes were also performed. The adsorption of each drug showed distinct aspects. Through the studies developed in this work was possible to describe a kinetic model for the adsorption of tetracycline on chitosan particles, thus demonstrating that it can be described by two kinetics of adsorption, one for protonated tetracycline and another one for unprotonated tetracycline. In the adsorption of sodium cromoglycate on chitosan particles, equilibrium studies were developed at different temperatures, allowing the determination of thermodynamic parameters / Dentre os pol?meros que mais se destacam nas ?ltimas d?cadas, a quitosana, um biopol?mero com propriedades f?sico-qu?micas e biol?gicas promissoras, tem sido alvo de um campo amplo de pesquisa. A quitosana se apresenta como uma ?tima escolha no campo de adsor??o, devido a suas propriedades adsorventes, baixo custo e abund?ncia. A presen?a de grupos aminos em sua cadeia governam a maioria das suas propriedades e definem em qual aplica??o dada amostra de quitosana poder? ser utilizada, assim torna-se imprescind?vel a determina??o do seu grau de desacetila??o m?dio. Neste trabalho foram desenvolvidos estudos cin?ticos e de equil?brio a fim de monitorar e caracterizar o processo de adsor??o de dois f?rmacos, o cloridrato de tetraciclina e o cromoglicato de s?dio, em part?culas de quitosana. Modelos cin?ticos e de isotermas de adsor??o foram aplicados nos dados experimentais. Para ambos os estudos, an?lises no potencial zeta tamb?m foram realizadas. A adsor??o de cada f?rmaco apresentou aspectos distintos. Atrav?s dos estudos desenvolvidos neste trabalho foi poss?vel descrever um modelo cin?tico para a adsor??o de tetraciclina em part?culas de quitosana, demonstrando que o mesmo pode ser descrito por duas cin?ticas de adsor??o, uma para a tetraciclina protonada e outra para a tetraciclina n?o protonada. Na adsor??o de cromoglicato de s?dio em part?culas de quitosana, estudos de equil?brio foram desenvolvidos a diferentes temperaturas, permitindo a determina??o de par?metros termodin?micos

Ce travail porte sur l'étude des voies réactionnelles accompagnant la liquéfaction desconstituants de la biomasse lignocellulosique dans un milieu aqueux proche du pointcritique. La stratégie expérimentale consiste à étudier la réaction en unité pilote decomposés lignocellulosiques modèles et à développer une approche analytiquemultitechnique originale afin de caractériser les structures et les masses moléculairesdes produits. Les résultats obtenus montrent que les schémas réactionnels sontcomplexes faisant intervenir de nombreuses voies de fragmentation et de condensationcompétitives. L'étude cinétique à différents temps de séjour montre que la fractionglucidique de la biomasse lignocellulosique a une réactivité très différente de sa fractionligneuse. / This work deals with the study of the reaction pathway during the lignocellulosicconstituent liquefaction by water near its critical point. Experimental method consists ininvestigation of lignocellulosic model compounds conversion in pilot plant combined withdevelopment of a new multitechnique analytical approach in order to characterizeproduct chemical structures and molecular weights. Results show that reaction pathwaysare very complex consisting to several fragmentation and condensation competitivereactions. The kinetic study with different reaction times reveals an important differenceof comportment for the glucidic fraction than the lignin fraction of biomass.

Dynamic contrast-enhanced magnetic resonance imaging (DCE-MRI) techniques offer the opportunity to understand the physiological processes involved in the distribution of the contrast agent in vivo. This work utilises a liver specific contrast agent (gadoxetate) and demonstrates the potential use of these techniques to study transporter-mediated process in vivo. In vitro experiments investigated gadoxetate’s interaction with uptake and efflux transporters at the cellular level, ideally a prerequisite to understand the contribution of transporter proteins in in vivo pharmacokinetics. MRI was used to measure the accumulation of gadoxetate in fresh rat hepatocytes. Furthermore, LC-MS/MS methodology was optimised in conjunction with two in vitro systems to determine the role of transporters in gadoxetate uptake and efflux. HEK-OATP1B1 transfected cells were used to optimise the LC-MS/MS technique and Caco-2 cell monolayers were used to examine whether gadoxetate is a substrate of the efflux transporters, Pgp and BCRP. Subsequent studies demonstrated the use of DCE-MRI techniques to study transporter-mediated processes. Two pharmacokinetic models were proposed to quantify the uptake and efflux of gadoxetate in vivo. The suitability of the models in describing the liver concentration profiles of gadoxetate was assessed in pre-clinical and clinical reproducibility studies. Further pre-clinical experiments demonstrated the ability of the proposed DCE-MRI techniques to monitor changes in the uptake and efflux rate estimates of gadoxetate into hepatocytes, through co-administration of the transporter inhibitor, rifampicin, at two doses. The work presented demonstrates the potential use of DCE-MRI techniques as a diagnostic probe to assess transporter-mediated processes and drug-drug interactions (DDIs) in vivo.

L'étude des phénomènes turbulents se développant en sortie du propulseur de Hall est nécessaire pour pouvoir modéliser le transport anormal (par opposition au transport diffusif) des électrons à travers les lignes de champ magnétique. Les relations de dispersion de deux instabilités pouvant être responsables de ce transport ont été mesurées à des échelles millimétriques à l'aide du diagnostic de diffusion collective de la lumière. Ce travail de thèse s'attache à en donner une description aussi bien théorique qu'expérimentale, pierre à l'édifice de la compréhension du transport dans le propulseur. Une instabilité se propageant majoritairement dans la direction azimutale du propulseur y est caractérisée comme étant l'instabilité de dérive électronique ExB et un modèle analytique décrivant la fréquence expérimentale y est dérivé et validé. De plus, le manuscrit présente une méthode de déconvolution du signal de la diffusion collective de la fonction d'appareil pour ce mode. Une fois déconvoluées, les relations de dispersion expérimentales peuvent être ajustées par la fréquence du modèle analytique, ce qui permet de mesurer expérimentalement et de manière originale la température et la densité électronique dans le jet d'ions énergétiques du plasma du propulseur. Enfin, la seconde instabilité, se développant autour de la direction axiale du propulseur, est caractérisée comme l'instabilité double faisceau entre les ions simplement et doublement chargés du plasma / The study of turbulent phenomena that grow at the exit plane of the Hall thruster is required to modelize the anomalous transport (in contrast to the diffusion transport) of electrons across the magnetic field lines. The dispersion relations of two instabilities that can be responsible for this transport have been mesured at millimetric scales by mean of the collective light scattering diagnostic. The aim of the thesis is to describe them theoretically as well as experimentally, improving the understanding of the Hall thruster transport. In the thesis, an instability that propagates principally azimuthally is caracterized as the ExB electron drift instability and an analytical model that describes the experimental frequency is derived and validated. In addition, the manuscript presents an original method to unfold the signal of the collective scattering diagnostic from the instrumental function of this mode. Once corrected, the experimental dispersion relations can be adjusted by the frequency given by the analytical model, allowing to measure experimentally and in an original way the electron temperature and density in the energetic ion jet of the Hall thruster plasma. The second instability that is mainly propagating in the axial direction is caracterized as the two-stream instability between the simply and doubly charged ions of the plasma