Malaria continues to be a major cause of mortality and morbidity especially in Sub-Saharan Africa. The emergence and spread of drug resistant parasites has highlighted the need for new chemically diverse, effective drugs. Historically, one of the major sources of antimalarial agents and novel template compounds has been higher order plants. The widespread use of medicinal plants for the treatment of malaria in South Africa represents a diverse resource of potential antimalarial drugs. Two South African plants, Vernonia staehelinoides and Oncosiphon piluliferum, were identified as potential sources of new antimalarial drugs through a national multidisciplinary-consortium project aimed at scientifically validating South African medicinal plants for the treatment of malaria. The in vitro antiplasmodial activity of extracts of these plants warranted further investigation to identify the biologically active components. Bio-assay guided fractionation based on in vitro antiplasmodial activity against the D10 P. falciparum strain was used to identify the compounds responsible for the observed activity. Compounds were purified using silica gel column chromatography. The structures of the isolated compounds were elucidated using spectroscopic techniques. Bioassay-guided fractionation of the organic extracts of V. staehelinoides leaves identified a pair of structurally-related hirsutinolides with significant in vitro antiplasmodial activity. The compounds were found to be cytotoxic at similar concentrations but proved to be interesting scaffolds for potential structure-activity relationship studies. Three germacranolides and two eudesmanolides were identified through bioassay-guided fractionation of the organic O. piluliferum extract. Selected derivatizations were conducted in order to fully characterize the compounds. The absolute configuration of the major active germacranolide was determined using Mosher's method. The effect of the reduction of the <font face="symbol"> a</font>-methylene group of the major active germacranolide on antiplasmodial activity and cytotoxicity was also investigated. The 5 compounds and the reduction product were found to possess varying degrees of in vitro antiplasmodial activity and cytotoxicity. None was sufficiently active or selective to be a viable drug candidate but the potential for further structure-activity relationship studies exists. / Dissertation (MSc (Chemistry))--University of Pretoria, 2007. / Chemistry / unrestricted

Polaromonas sp. strain JS666 is the only isolated bacterium capable of aerobic growth using the groundwater pollutant cis-1,2-dichloroethene (cDCE) as a sole carbon source. Its genome has a wealth of evidence of recent gene acquisition through horizontal gene transfer, and contains gene clusters predicted to encode enzymes allowing the metabolism of a wide variety of xenobiotic compounds. Culture growth using each of these hypothesized substrates was tested experimentally, and many were confirmed as sole carbon sources for strain JS666. In addition to pollutant degradation, many of these metabolic pathways have applicability in the field of biocatalysis, as does the genome-assisted pathway prediction approach to biocatalyst discovery. During (or immediately following) growth on cDCE, cultures of Polaromonas sp. strain JS666 oxidize ethene to epoxyethane at an increased rate, and also cometabolically oxidize several other chlorinated ethenes. Given the involvement of a monooxygenase in other species' 1-chloroethene (vinyl chloride) oxidation, it was hypothesized that alkene oxidation in strain JS666 was due to the activity of a monooxygenase that also was responsible for the first step in cDCE oxidation. The alkene oxidation activity of strain JS666 was investigated using gene expression analysis, proteomics, and whole-cell kinetic assays. Results of these experiments pointed to the upregulation of a cyclohexanone monooxygenase (CHMO) during growth on cDCE and during oxidation of ethene. To determine the activity of this cyclohexanone monooxygenase, its gene was cloned and heterologously expressed in an E. coli host. Our CHMO expression system exhibited activity on cyclohexanone, but not cDCE or ethene, disproving our hypothesis about its involvement in alkene oxidation. The heterologously expressed monooxygenase was also investigated for enantioselective oxidation of racemic cyclic ketones to chiral lactones, and was discovered to have very high enantioselectivity with the tested compounds. Chiral lactones and other single-enantiomer oxidation products are valuable for fine chemical synthesis, and their biocatalytic production is more environmentally sustainable and often less expensive than traditional techniques. The research described in the following chapters illustrates the many opportunities that arise when the fields of bioremediation and biocatalysis converge. The shared research goals and methods of these two areas lend themselves to interdisciplinary research, and increased communication and crossover between them should provide benefits for both environmental remediation and sustainable chemical synthesis.

No description available.

<p> Oxetan-2-ones (β-lactones) represent important synthetic targets because they are versatile synthetic intermediates and are present in a wide variety of pharmacologically relevant natural products. Using several reported methods, a homologous series of racemic C4-monosubstituted and trans-1 ,2-disubstituted β-lactones was prepared for investigation as potential inhibitors of yeast 3-hydroxy- 3-methylglutaryl-Coenzyme A (HMG-CoA) synthase. However, no general method were then available for the preparation of the corresponding cis-1 ,2- disubstituted β-lactones. </p> <p> Using the mercury (II) promoted Masamune lactonization of β-hydroxy thiopyridyl ester 3-7, cis-3-methyl-4-decyloxetan-2-one (3-1) was prepared in high yield. The requisite syn thiol ester was prepared starting from undecanal: (1) in one step using a titanium {IV) promoted Mukaiyama aldol condensation with silyl ketene acetal 1-28; and (2) in three steps using a titanium (IV) promoted Evans-type aldol condensation with N-propionyl thiazolidinethione 4-24, followed by conversion of the thiazolidinethione aldol adduct to thiol ester 3-7 through the corresponding free acid. Substituting N-propionyl thiazolidinethione 4-24 for chiral N-acetyl and N-propionyl thiazolidinethiones 4-26 and 5-16, respectively, the Evans-type aldol condensations with undecanal proceeded with excellent diastereoselectivity (> 90 %de); this is necessary for the preparation of optically active cis-1 ,2-disubstituted and C4-monosubstituted β-lactones. </p> <p> A tandem-Evans aldol-lactonization (TEAL) reaction was developed using the lithium enolates of N-acetyl (5-16) and N-propionyl thiazolidinethione 4-24. Thus far, trisubstituted spiro β-lactones 6-17 and 6-19, and C4-disubstituted spiro β-lactone 6-22, have been successfully prepared in one-pot. </p> <p> In addition to using aldol condensations to prepare the carbon skeleton for C4-monosubstituted β-lactones, a Claisen-type condensation on a glycoluril template was attempted; the advantage of this route was the potential use of well developed asymmetric reductions of the product β-keto carboxylic acid derivative to introduce optical activity in an enantioselective preparation of C4- monosubstituted β-lactones. Unfortunately, using glycoluril 7-11, racemic 4- nonyloxetan-2-one (2-7v) was produced in poor yield because of difficulties encountered removing the aldol adduct-like β-hydroxy carboxylic acid derivative from the template. </p> / Thesis / Doctor of Philosophy (PhD)

Il existe un grand nombre de composés naturels très actifs biologiquement qui possèdent une partie 3-alkyl-2(5H)-furanone. Dans le but de préparer aisément quelques-uns de ces composés, des conditions douces de couplage ont été élaborées. Dans un premier temps, un protocole efficace et rapide pour effectuer un couplage croisé C(sp²)-C(sp) de Sonogashira à partir du 5-alkyl-3-bromo-2(5H)-furanone a été développé. Par la suite, son application a été présentée lors des synthèses de l'isofugomycine 1, de la (S)-désoxyfugomycine 19 et de la fugomycine 23. Dans le cadre d'une étude préliminaire sur la lithiation latérale, la première synthèse du diméthylfuranolate 32 a été réalisée. Celle-ci nous a amené à déterminer que la lithiation latérale n'est pas possible chez les furanolates. Dans le cadre d'une étude préliminaire sur la biomimétique des γ-pyrone, la synthèse du (E)-diol 36 a été réalisée. Celui-ci a été époxydé dans des conditions douces pour ensuite subir une oxydation où des traces de γ-pyrone ont été observées par RMN ¹H. Ainsi, des résultats prometteurs ont été obtenus et des études plus poussées sont à prévoir.

The acetylcholine (ACh) receptor system belongs to rhodopsin GPCR family and is an integral membrane protein divided into two types: muscarinic and nicotinic. The naturally occurring neurotransmitter acetylcholine binds to these two receptor systems non- selectively. The regulatory effects of the neurotransmitter acetylcholine are diverse ranging from autonomic nervous system and the central nervous system through different types of neurons innervated by cholinergic inputs. Muscarinic acetylcholine receptors (mAChRs) are divided into five receptor subtypes (M1-M5). In general, M1, M3 and M5 receptor subtypes are coupled via Gq like proteins; while M2 and M4 subtypes are coupled to Gi-proteins. Muscarinic receptors are widely distributed in the body where they mediate a variety of important physiological effects. mAChRs have been the target of drug development efforts for the treatment of various disorders including overactive bladder, Alzheimer's disease, pain, cognitive impairment, drug addiction, schizophrenia and Parkinson's disease. The development subtype selective ligands possess a challenge due to a high degree of homology among mAChR subtypes, however the recent availability of the X-ray crystal structure for the M2 and M3 receptor can be utilized for the design of new ligands. The pharmacophoric requirements for cholinergic ligands have been reported by numerous investigators based on structure-activity relationship (SAR) and/or molecular modeling data of known muscarinic ligands. These fundamental requirements are useful when designing muscarinic ligands but have provided little guidance in the design of subtype selective compounds. Our interest in developing novel muscarinic receptor ligands led to the design of lactone-based ligands using an approach similar to that reported by Kaiser et al. Preliminary binding studies of our previously synthesized lactone based compounds indicated that several were nonselective, low affinity (IC50 = µM range) muscarinic agonists (based on preliminary in vivo data). Hence based on the background information, we decided to utilize the previously synthesized lactone parent compound as lead molecule set out to investigate a new series of lactone based compounds in order improve the affinity and later the selectivity of ligands. Bioisosteric approach has been investigated for the metabolic lability of the lactone ring. Four probable bioisosteres have been evaluated: tetrahydrofuran, 1,3-benzodioxole, oxazolidinone and chromone. Thermal/microwave assisted synthesis has been utilized in the generation of intermediates as well as final compounds. Preliminary screening and further evaluation (IC50/ subtype selectivity) has resulted in the identification of promising fragments as bioisosteres for the lactone ring. / Pharmaceutical Sciences / Accompanied by one .pdf file.

Yes / An efficient four-step synthesis of tetracyclic lactones from 1,4-benzodioxine-2-carboxylic acid was developed. Ellipticine derivatives exhibit antitumor activity however only a few derivatives without carbazole subunit have been studied to date. Herein, several tetracyclic lactones were synthesized and biologically evaluated. Several compounds (2a, 3a, 4a and 5a) were found to be inhibitors of the Kras-Wnt pathway. The lactone 2a also exerted a potent inhibition of Tau protein translation and was shown to have capacity for CYP1A1-bioactivation. The results obtained are further evidence of the therapeutic potential of tetracyclic lactones related to ellipticine. Molecular modeling studies showed that compound 2a is inserted between helix α3 and α4 of the KRas protein making interactions with the hydrophobic residues Phe90, Glu91, Ile9364, Hie94, Leu133 and Tyr137and a hydrogen bond with residue Arg97. / The Spanish Minister (CTQ2011-29285-C02-02) the SGR(2014)-1017 Generalitat de Catalunya and the Laboratories Servier (France)

Ce travail traite de l’exploration de la biodiversité des Baeyer-Villiger MonoOxygénases (BVMOs) : des enzymes utilisées en biocatalyse pour la production de lactones optiquement pures à partir de cétones. Pour mettre à bien cet objectif nous avons réalisé, en association avec le Génoscope d’Evry, une sélection de plusieurs centaines d’enzymes couvrant une forte diversité génétique. Après clonage et criblage à haut débit sur plus de vingt substrats différents nous avons obtenus plus de 90 nouvelles BVMOs. Avec ce résultat nous avons triplé le nombre de BVMOs connues dans la littérature. Dans un second temps nous avons étudié l’activité de certaines de ces nouvelles enzymes sur les cétones α,β-insaturées (ou enone), Ces substrats sont peu étudiés en biocatalyse et, lors de la réaction chimique, aboutissent à la formation de nombreux sous-produits. Deux enzymes d’O.batsensis et de P. lavamentivorans se sont révélées être actives aboutissant à la production d’ene-lactone et d’enol-lactone respectivement. La conversion de certaines enones chirales a abouti à des lactones présentant un fort excès énantiomérique.Nous avons ensuite étudié la régio-sélectivité de 35 enzymes issues du criblage sur une série de cétones aliphatiques acycliques. Alors que la formation de l’ester méthylique est très rare, nous avons obtenu des résultats très variés pour la formation de l’ester éthylique allant jusqu’à 80%. Le travail de thèse s’est terminé par le développement d’une cascade enzymatique sur la production d’ester à partir d’alcool secondaire. La cascade implique deux enzymes : une Alcool Déshydrogénase et une BVMO. La cascade est à la fois fonctionnelle et est très efficace. / -

Au cours de nos différents travaux sur les réactions de cyclisations électrophiles diastéréosélectives 5-endo d’hydroxamates insaturés par l’hexafluorophosphate de bromo biscollidine (HBB). Nous avons constaté la formation d’imidates cycliques et nous avons mis en évidence un réarrangement lactames-imidates. Une fragmentation de type Beckman aboutissant à la formation d’une famille de cyano énones, anisi qu’une nouvelle formation d’imidates a été étudiée.Dans l’introduction générale, nous avons rapporté différents exemples d’halolactonisations électrophiles 5-endo et 5-exo, énantio et diastériosélectives rapportés dans la littérature, ainsi que les facteurs influençant la régio et la diastereoselectivité de ces cyclisations.Dans le premier chapitre, après un rappel bibliographique sur les différentes synthèses de lactames à partir de différents substrats par cyclisation électrophile, nous avons présenté nos propres travaux.Le traitement d’hydroxamates β, γ−éthyléniques γ-disubstitués avec de l’hexafluorophosphate de bromo bis(sym-collidine) dans du dichlorométhane aboutit à la formation de lactames et d’imidates cycliques. On a pu confirmer par des études RMN, l’existence d’un réarrangement lactame-imidate cyclique.Dans une deuxième partie, nous avons étudié la diastereosélectivité de la cyclisation. A cet effet, des hydroxamates optiquement actifs ont été synthétisés via la méthodologie développée par Evans. Dans tous les cas, un seul produit, un bromo-imidate cyclique optiquement actif est obtenu.Dans le deuxième chapitre, l’étude de la réaction de cyclisation des hydroxamates β, γ−éthyléniques γ-monosubstitués avec HBB, nous a permis de mettre en évidence une fragmentation de type Beckmann. Cette dernière est améliorée par réaction des produits de cyclisation avec de la triethylamine. On a généralisé cette fragmentation en l’appliquant à différents substrats.Enfin, dans le troisième chapitre, après une étude bibliographique sur la synthèse d’imidates et leurs utilités en synthèse organique, on a synthétisé des imidates β, γéthyléniques, afin de les utiliser comme substrats dans la réaction de cyclisation éléctrophile utilisant HBB. Dans ce cas aussi, la formation d’imines cycliques est constatée. / This work deals with the 5-endo halogeno electrophilic cyclization reactions of β,γ-ethylenic hydroxamates to give halolactames and halo cyclic iminolactones.In the first chapter, the reaction of γ-disubstituted β,γ-unsaturated hydroxamates with bis(collidine)bromine(I) hexafluorophosphate is studied. This type of reaction led mainly to the formation of bromo cyclic imidates, which were the thermodynamic products. Unsaturated cyclic imidates were then obtained by reaction with triethylamine. A lactame-iminolactone rearrangement was obtained during those reactions. In a next step we decided to study the diastereoselectivity of the reaction, using optically actif hydroxamates. In the second chapter, we decided to study the reaction of bis(collidine)bromine(I) hexafluorophosphate with γ-aryl β,γ-unsaturated hydroxamates, the corresponding bromo cyclic imidates were also obtained. However, by reaction with triethylamine, these compounds led with good yields, to the formation of 3-cyano-2-propen-1-ones by a Beckmann type fragmentation reaction. In the third chapter, the reaction of γ-mono and disubstituted β,γ-unsaturated imidates with bis(collidine)bromine(I) hexafluorophosphate is studied. The results that we obtained were not sufficient enough to understand the electrophilic cyclization mechanism of these types of substrates.

gamma-Lactones are found in a wide variety of food and beverage products, in particular grapes and wine. This thesis details the work completed on some gamma-lactones in wine: their synthetic preparation, development of quantification methodologies and sensory studies. Chapter 1 outlines the history of the Australian wine industry from the arrival of the first vines on the First Fleet in 1788 with Captain Arthur Philip. This chapter provides: an overview of Australia’s position in the world of grape and wine production; an analysis of the export arm of the industry; and a look at the different wine producing regions around the country. The latter part of the chapter focuses on the different volatile compounds found in wine. Part A: Chapter 2 provides an overview on the history of barrel manufacture and the use of oak wood in cooperage, with an emphasis on oak’s well known ability to impart desirable characteristics to wine through the extraction of volatile aroma compounds. This chapter provides a summary of these odorants with a particular emphasis on the oak lactones. Previous sensory studies and synthetic work are discussed. Of great importance to this work are the recent advancements in 1,2-dioxine chemistry, highlighted in this chapter. Chapter 3 details the synthetic work completed for the preparation of all four possible oak lactone stereoisomers. A suitably substituted racemic 1,2-dioxine featured as the common intermediate and enabled preparation of the gamma-lactone moiety upon reaction with a chiral malonate diester and separation of the diastereomers by column chromatography. A key step involved the decarboxylation of the ester cleaved gamma-lactone diastereomers, which could be directed to give either the cis- or trans-products. Standard chemical transformations were then utilised to produce the desired stereoisomers of oak lactone. Chapter 4 describes the results from the sensory studies that were completed on the synthetic oak lactone samples. Odour detection thresholds were measured in both a white and a red wine. The thresholds in the former medium were calculated to be 24 ug/L, 172 ug/L, 132 ug/L and 305 ug/L, while in the latter medium the thresholds were calculated to be 57 ug/L, 380 ug/L, 175 ug/L and 285 ug/L, for (4S,5S)-cis-, (4S,5R)-trans-, (4R,5R)-cis- and (4R,5S)-trans-oak lactone, respectively. Difference testings were completed on the pairs of enantiomers and also on mixtures of the nature-identical isomers: between the cis-enantiomers a significant difference was found at the 99% confidence level, while between the trans-enantiomers and also the mixtures of cis- and trans-isomers little difference was observed. Chapter 5 contains the experimental procedures for Part A. Part B: Chapter 6 discusses the sensory properties of some gamma- and delta-lactones, with the focus on a series of five-alkyl substituted gamma-lactones: gamma-octalactone, gamma-nonalactone, gamma-decalactone and gamma-dodecalactone. Topics covered in this chapter include chirality, biosynthetic pathways and quantification results in wine from previous studies for these gamma-lactones. Chapter 7 concerns the method development for the quantification of gamma-lactones in wine using a stable isotope dilution assay (SIDA). Deuterated analogues were prepared from commercially available racemic gamma-lactones for use as internal standards. Initially a head space solid-phase microextraction (HS SPME) method was developed using d5-standards; however, analysis of bottled wine samples revealed the presence of co-eluting compounds that contained several of the selected ions. Thus an alternative method was developed using d7-standards, with a specific focus on sample clean-up, via solid-phase extraction (SPE). Using this procedure, 44 white and 120 red wines were analysed for their gamma-lactone content. The lactones were found to be significantly more common in the red wines, with gamma-nonalactone the most abundant lactone in this series. Chapter 8 deals with the extension of the SIDA method, as developed in Chapter 7, for use with a chiral gas chromatography column. Optically pure standards were prepared, from either L- or D-glutamic acid, and used to determine the order of elution of the enantiomers. A method was developed for the quantification of the individual enantiomers of gamma-octalactone, gamma-nonalactone, gamma-decalactone and gamma-dodecalactone. The enantiomeric distribution of gamma-nonalactone was investigated in 34 red wines; the (R)-stereoisomer was found to be dominant with an average of 59%, although there were wines analysed that did contain the (S)-stereoisomer in greater amounts. Chapter 9 describes the results from the sensory studies that were completed on the individual enantiomers of the gamma-lactones. Odour detection thresholds were measured in a red wine. The thresholds were calculated to be 238 ug/L, 285 ug/L, 34 ug/L and 8 ug/L for the (R)-enantiomers, while the thresholds were calculated to be 135 ug/L, 91 ug/L, 47 ug/L and 39 ug/L for the (S)-enantiomers, of gamma-octalactone, gamma-nonalactone, gamma-decalactone and gamma-dodecalactone, respectively. Chapter 10 contains the experimental procedures for Part B. Chapter 11 contains the appendices, followed by the references in Chapter 12.