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This diploma thesis is focused on the determintaion of viscoelastic properties of agarose hydrogels containing different polyelectrolytes by microrheological and macrorheological techniques. From microrheological techniques the dynamic light scattering was used. Firstly, the influence of different polyelectrolyte volume was studied. Then the effect of variously charged polyelectrolyte and ionic strenght on microrheological properties of agarose hydrogels were determined. Classic rheology was used to compare the results obtained using the DLS microrheology method. Finally, the results from macro- and microrheology were correlated with each other.

This thesis explores the structures and dynamics of optically confined matter, ranging from single particle traps to complex optically bound colloidal arrays, investigating and quantifying the behaviour of each system. It begins with an introduction to optical manipulation techniques and a discussion of the development of the single beam gradient force trap, more commonly referred to as optical tweezers. Following this, the building of a single beam optical trap will be presented alongside a discussion of some of the key components in such a setup, before it is calibrated, allowing a demonstration of some of the techniques which are utilised later in the thesis. The optical trapping of aerosol droplets is an area of key importance in atmospheric chemistry, as optical tweezers provide a valuable and versatile tool for droplet manipulation and characterisation. Trapping single aerosol droplets is facilitated by using annular rather than conventional Gaussian beams, as will be demonstrated, with significant advantages in increasing the size range of trappable droplets, and improving their axial localisation. These improvements will be demonstrated experimentally with an in-depth comparison of Gaussian and annular beam trapping. These enhancements are also verified theoretically using a model developed by Burnham and McGloin, showing excellent agreement with experimental results. Ionic liquids, defined as organic salts with melting points below room temperature, are another area of great contemporary interest. They are highly tunable and so have been referred to as "designer solvents", and also have important applications as "green" solvents in organic chemistry. Trapping particles within these novel liquids allows a micro-rheological investigation of their properties to be conducted. This is demonstrated by determining the temperature dependent viscosity changes of these media, showing excellent agreement with previous macro-rheological studies. In addition, hydrodynamic effects such as Faxen's correction to viscous drag in proximity to a surface, and hydrodynamic coupling between pairs of colloids trapped in ionic liquids are demonstrated. Following these single and dual particle studies, this thesis continues with an investigation of the structures and dynamics of optically bound matter formed of larger numbers of particles. The behaviour of these optically bound structures is particularly sensitive to the number of particles involved, and so a counter-propagating evanescent field trap in conjunction with an inverted optical tweezers setup is utilised in order to controllably assemble these structures and study the factors affecting their behaviour. Initially one-dimensional chains of optically bound 3.5 um diameter silica particles are studied, allowing an implementation of Generalized Lorentz-Mie Theory (GLMT) to be developed through collaboration with Dr. Jonathan Taylor of The University of Glasgow. Experimental and theoretical insights allow further understanding of the processes involved in the formation of these structures. Having studied the behaviour of 3.5 um diameter silica particles in a counter-propagating evanescent wave trap, the effects of changing particle size and refractive index are presented by using smaller silica and melamine particles. These results are explained in terms of the increased importance of interference fringes in determining the arrangement of the optically bound structures of smaller particles, and due to the increased interaction of the melamine particles with the evanescent field as a result of the larger refractive index contrast between them and the trapping medium. The thesis then concludes with a study of the dynamics of the previously presented optically bound chains. Initially the diffusion of single particles in the evanescent field is compared to their freely-diffusing behaviour, quantifying the confining effect of the field. The addition of particles to the field then allows the diffusive behaviour to be studied as a function of particle number, and understood in terms of on-axis confinement by adjacent particles. The tilting of these optically bound chains relative to the inter-beam axis is also explored as a function of particle number, as is the rigidity of these chains. Finally a more complex, dynamic effect is presented, dubbed "Newton's Cradle", in which particles are ejected from the ends of the chains before returning and repeating this process. This behaviour is understood by utilising the previously developed GLMT simulations.

A new microrheology set-up is described, which allows us to quantitatively measure the transient rheological properties and microstructure of a variety of solvent-responsive complex fluids. The device was constructed by integrating particle tracking microrheology and microfluidics and offers unique experimental capabilities for performing solvent-response measurements on soft fragile materials without applying external shear forces. Transient analysis methods to quantitatively obtain rheological properties were also constructed, and guidelines for the trade-off between statistical validity and temporal resolution were developed to accurately capture physical transitions. With the new device and methodology, we successfully quantified the transient rheological and microstructural responses during gel formation and break-up, and viscosity changes of solvent-responsive complex fluids. The analysis method was expanded for heterogeneous samples, incorporating methods to quantify the microrheology of samples with broad distributions of individual particle dynamics. Transient microrheology measurements of fragile, heterogeneous, self-assembled block copolypeptide hydrogels revealed that solvent exchange via convective mixing and dialysis can lead to significantly different gel properties and that commonly applied sample preparation protocols for the characterization of soft biomaterials could lead to erroneous conclusions about microstructural dynamics. Systematic investigations by varying key parameters, like molecular structure, gel concentration, salt concentration, and tracer particle size for microrheology, revealed that subtle variations in molecular architecture can cause major structural and microrheological changes in response dynamics. Moreover, the results showed that the method can be applied for studying gel formation and breakup kinetics. The research in this thesis facilitates the design of solvent-responsive soft materials with appropriate microstructural dynamics for in vivo applications like tissue engineering and drug delivery, and can also be applied to study the effect of solvents on self-assembly mechanisms in other responsive soft materials, such as polymer solutions and colloidal dispersions.

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La métastase des cellules cancéreuses est un processus caractérisé par un comportement de la cellule anormal. Les propriétés mécaniques particulières des cellules cancéreuses est l'une des caractéristiques pathologiques principales. Ces propriétés sont liées à leurs capacités à envahir les tissus avoisinants, à transmigrer et à proliférer vers de nouveaux sites. La progression du cancer est caractérisée par la perturbation et la réorganisation du cytosquelette d'actine ainsi que par des changements des propriétés mécaniques des cellules, probablement liés à la capacité dupliquée des cellules cancéreuses à migrer et à s'adapter à l'environnement.Les propriétés mécaniques sont essentielles pour la régulation des fonctions cellulaires comme la migration, l'adhésion, la prolifération, et la différentiation, et les anomalies sont associées aux pathologies, en particulier le cancer. Les propriétés mécaniques sont aussi dépendantes du micro-environnement de la cellule, et la rigidité des substrats modifie les propriétés mécaniques internes des cellules, ainsi que la structure du cytosquelette. Ainsi, comprendre les processus impliqués dans les variations des propriétés viscoélastiques est essentiel pour l'étude de la progression des tumeurs.La microscopie à force atomique (AFM) a prouvé être un outil fiable pour sonder les propriétés mécaniques statiques et dynamiques (sur de grande gamme de fréquence) de matériaux mous, comme les spécimens biologiques, à de petites échelles et grande résolution.Dans cette étude, nous proposons de nouveaux marqueurs du cancer basé sur une approche mécanobiologique. Les propriétés viscoélastiques de cellules cancéreuses de la vessie sont mesurées par des expériences d'indentation dynamiques par AFM. Cette méthode est validée en utilisant des gels de polyacrylamide et un modèle à fractions dérivées est proposé pour décrire le comportement mécanique de ces gels. Ensuite, le module de cisaillement complexe de trois lignées cellulaires à potentiel métastatique différent est mesuré à trois positions différentes de la cellule: le noyau, le périnoyau et la périphérie de la cellule. En utilisant des drogues d'inhibition de l'actine, les propriétés mécaniques sont corrélées à la microstructure de l'actine obtenue par microscopie confocale. Nous proposons un modèle simplifié pour décrire le comportement des modules élastiques G' et visqueux G''. Une relation entre l'invasivité des cellules cancéreuses et leur propriétés mécaniques est aussi mis en avant. En particulier, nous trouvons que le plateau élastique et la fréquence de transition (quand G'=G'') peuvent être utilisés comme marqueurs d'invasivité. Enfin, nous mesurons le module de cisaillement complexe de cellules cancéreuses adhérentes sur des environnements mécaniques et biologiques différents, et des propriétés intrigantes de la périphérie des cellules cancéreuses sont reportées. / Cancer cell metastasis is a multi-stage process characterized by cell malfunctional behavior. Some of the major pathological characteristics of cancer cells are their particular mechanical properties which are linked to their ability to invade surrounding tissues, transmigrate and proliferate at new sites. There are evidences that cancer progression is characterized by disruption and reorganization of the actin cytoskeleton as well as changes in the mechanical properties. This change is probably associated with the enhanced capability of cancer cells to migrate and adapt to changing environments.The mechanical properties are essential for the regulation of cell functions like migration, adhesion, proliferation and differentiation, and abnormalities are connected with pathologies, in particular cancer metastasis. The mechanical properties are also dependent on the micro-environment of the cell, as substrate stiffness changes cell internal mechanical properties, as well as the cytoskeleton structure. Thus, the understanding of the mechanics involved in the variation of the viscoelastic properties is crucial for the study of tumor progression.Atomic force microscopy (AFM) has proved to be a reliable tool to probe static and frequency–dependent mechanical properties of soft materials, like biological specimens, at small scale with high resolution.In this study, we propose new markers of cancer metastasis based on a cell mechanics approach. We report on the viscoelastic properties of human bladder cancer cells measured by dynamic indentation experiments using AFM. This method is first calibrated using polyacrylamide gels and a fractional model is proposed to describe the behavior of such gels. We then investigate the complex shear modulus of three different cell lines with different metastatic potential. We probe the elastic G' and viscous G'' modulus at three different locations across the cell: nucleus, perinucleus and the cell periphery. With the use of actin inhibitory drugs, we correlate mechanical properties and the actin microstructure obtained by confocal microscopy imaging. We propose a simplified power-law model to describe the behavior of the elastic and viscous moduli. We also report a relationship between the malignancy of cancer cells and their viscoelastic properties. In particular, we find that the elastic plateau modulus and the transition frequency (frequency at which G' = G'' ) can be used as markers of invasiveness. Then, we probe the complex shear modulus of cancer cells on different mechanical and biological environments and we report intriguing properties of the periphery of cancer cells.

Les propriétés viscoélastiques des fluides déterminent leur écoulement. L’étude de ces propriétés a de nombreuses applications industrielles et académiques qui concernent la matière dite « molle » (polymères, colloïdes, tensioactifs, protéines, ...). L’approche proposée permet d'étudier ces propriétés sur une gamme de fréquence allant de 1 à 100 kHz. La méthode utilise la mesure de la vibration d’une microstructure actionnée électromagnétiquement et immergée dans le fluide à caractériser. La réponse en fréquence du système mécanique, mesurée optiquement ou électriquement, est caractéristique du milieu dans lequel la structure est immergée. Une méthode analytique dédiée aux micropoutres, pour l’extraction des propriétés rhéologiques du milieu, a été améliorée tout au long de la thèse.La méthode analytique développée, pour être appliquée, nécessite la précision d’un système optique complexe pour mesurer sans artefact les propriétés mécaniques de l’interaction micropoutre-liquide. Ainsi les liquides opaques ne peuvent être caractérisés avec cette approche. De plus la mesure peut difficilement être intégrée dans un dispositif portable tout-électronique. Afin de pallier ces difficultés et de proposer une mesure de la viscoélasticité en milieu opaque, la stratégie de mesure du capteur jusqu’au traitement des signaux ont été réévalués : (1) des microstructures en « U » ont été fabriquées, (2) une méthode de mesure intégrée a été mise en place et (3) une méthode de traitement à fréquence unique a été utilisée. Finalement, un liquide opaque viscoélastique, le yaourt, a pu être caractérisé in-situ tout au long de la fermentation lactique permettant de démontrer la validité et l’applicabilité de la méthode mise en œuvre pour le suivi en temps réel de la viscoélasticité. / The study of viscoelastic properties has many industrial and academic applications related to "soft matter" like polymers, colloids, surfactants or proteins. The present approach measures these properties in a frequency range from 1 to 100 kHz. The method uses the measurement of the vibration of a microstructure actuated electromagnetically and immersed in the fluid that has to be characterized. The frequency response of the mechanical system, which is measured optically or electrically, is characteristic of the environment in which the structure is immersed in. An analytical method dedicated to microcantilevers for the extraction of the rheological properties has been improved during this PhD thesis.The analytical method developed requires the accuracy of a complex optical system for measuring without artifact the mechanical properties of microcantilever-liquid interaction. Thus opaque liquids cannot be characterized with this sytem. In addition, the measurement cannot easily be integrated. To overcome these difficulties and provide the measurement of viscoelasticity into opaque medium, some strategy was reassessed: (1) “U” shaped microstructures were fabricated; (2) an integrated measurement method was developed and (3) a single frequency method was used to calculate the viscoelasticity.Finally, a viscoelastic and opaque liquid, such as yogurt, has been characterized in situ during the lactic fermentation to demonstrate the validity and the applicability of the method for the real-time monitoring of viscoelasticity.

This diploma thesis deals with the use of fluorescence correlation spectroscopy technique for microrheological characterization of hydrogel in a system of hyaluronate-cetyltrimethylammonium bromide. Fluorescently labelled particles were used for microrheological FCS analysis. To optimize the method the most appropriate size of particles was chosen on the basis of Newtonian glycerol solutions analysis. Among other things, the discussion was focused on the influence of refractive index change of analysed solutions on analysis results. After hyaluronate solutions analysis it was possible to assess the biopolymer concentration and molecular weight impact on the FCS microrheology results, which could then be compared with analysis results of model hydrogels of hyaluronate and CTAB. Finally, usability and limitations of FCS microrheology have been discussed.

Diabetes has gained growing attendance as one of the key non communicable diseases (NCD) with the World Health Organization identifying it as the focus of the World Health Day 2016. It is reported that more than 420 million people suffer from diabetes, a number predicted to rise in the coming years. This report forms part of a broader, long term focus project that aims to establish a systems approach to type 2 diabetes (T2D), the variant that accounts for more than 90% of reported diabetes cases. The broader project objectives are to identify possible biomarkers for the onset and the progression of T2D as a precursor to enable potential future approaches to delay onset, or even reverse disease states, via active bio-compounds and/or establishment of beneficial nutritional patterns. The 6-month master’s work reported here is sub-project that focused specifically on cell level vesicle trafficking processes. These processes are believed to be crucial in understanding the formation amyloid plaques, which compromise or kill the insulin secreting beta cells. Up until now, there has been a lack of appropriate experimental techniques to directly observe this process in live cells.  Hence we have developed 2 new techniques: (i)               a method of imaging the actin and tubulin network reorganization during exocytosis of the insulin containing granules while exploring novel ways of characterizing the network. (ii)             a method of imaging the granules themselves and using particle tracking microrheology to analyze their movement patterns during stimulation with glucose. These new techniques open the door to follow up experiments which would allow development of a cell scale mathematical model or simulation correlating short term glucose dynamics to risk of amyloid plaque formation and T2D.

Diploma thesis was aimed to deal with evaluation of microrheology method in the research of biopolymer-protein. Used biopolymer was sodium hyaluronate and proteins were trypsin and chymotrypsin. For measuring of microrheology were used particles with different radius (0,5 m and 1 m). It was found, that both substances have viscous charakter. Passive microrheology is suitable for measuring the viscoelastic properties of biopolymers.