Background: A significant portion of lactating women in less developed countries have vitamin A (VA) deficiency. Lactation has substantial effects on a mother’s metabolism and VA is known to be needed in multiple biological processes, including growth, vision, immunity, and reproduction. Objective: The objective of this pilot study was to utilize metabolomics profiling to conduct a broad, exploratory assessment of differences in plasma metabolites associated with low VA status versus adequacy in lactating women. Methods: Plasma samples from lactating women who participated in a survey in Samar, Philippines, were selected from a cross-sectional study based on plasma retinol concentrations indicating low (VA-; n=5) or adequate (VA+; n=5) VA status (plasma retinol <0.7 or >1.05 µmol/L). The plasma results collected from six metabolomics assays (oxylipins, endocannabinoids, bile acids, primary metabolomics, aminomics, and lipidomics) were compared by group, using liquid chromatography mass spectrometry. Results: Twenty-eight metabolites were significantly different in the VA- versus VA+ status, with 24 being lipid mediators (p<0.05). The lipid mediators demonstrated lower concentrations of the arachidonic acid- and eicosapentaenoic acid-derived oxylipins, as well as lysophospholipids and sphingolipids, in the VA- group (p<0.05). Chemical similarity enrichment analysis identified HETEs, HEPEs, and DiHETEs as significantly different oxylipin clusters (p<0.0001, false discovery rate (FDR) p<0.0001), as well as sphingomyelins, saturated lysophosphatidylcholines, phosphatidylcholines, and phosphatidylethanolamines (p<0.001, FDR p<0.01). Conclusions: The multi-assay nutritional metabolomics profiling of low VA status compared with adequacy in lactating women demonstrated reduced lipid mediator concentrations. Future studies with stronger study designs and a large and more diverse population are needed to validate these preliminary results.

Made available in DSpace on 2016-08-10T10:38:29Z (GMT). No. of bitstreams: 1 Fernanda Carla Stegani.pdf: 10431040 bytes, checksum: 2702ca1faeabb2d893b8f2971288b01e (MD5) Previous issue date: 2011-12-08 / The Intellectual Disability (ID) is defined as a disability characterized by significant limitations both in intellectual functioning and in the adaptive behavior and it is expressed in practical, social and conceptual skills, originating before the age of 18. It is one of the most common neuropsychiatric disorders in children and adolescents, with a 5% prevalence in our population. The Fragile X Syndrome (FXS) is the most frequent and best documented DI heritable in humans. The phenotype of FXS is associated with mutations in the gene FMR1 (Fragile X Mental Retardation-linked type 1) and it covers a broad spectrum of behavioral and physical involvement. It is caused by a CGG trinucleotide expansion in the first exon of the FMR1 gene located in the region Xq27.3 on the X chromosome Because of its phenotypic diversity, this disease has been under diagnosed in the pediatric population. Among the techniques used for molecular diagnosis of FXS, the MLPA (Multiplex Ligation-dependent Probe Amplification) has been considered promising. In this context, this study aimed to validate the molecular diagnosis of patients suspected of FXS in the Laboratory of Cytogenetics and Molecular Genetics (Lagene) by the MLPA technique. We selected 33 patients referred by medical from public health to Lagene with clinical of FXS. To perform the analysis by MLPA the Salsa MLPA P106-B1 MRX kit was used. The amplificons were obtained only for 15% of the patients. The MLPA kit used did not detect changes in the copy number of the FMR1 gene in any examined patient, being useful the need of other molecular methods to confirm the diagnosis of FXS. Thus, we concluded that such MLPA kit was not useful to detect specific changes in the copy numbers of the FMR1 gene. So the Salsa MLPA Kit P106-B1 MRX should not be used to the trial of patients with FXS. / A Deficiência Intelectual (DI) é definida como uma incapacidade caracterizada por limitações significativas, tanto no funcionamento intelectual quanto no comportamento adaptativo e está expressa nas habilidades práticas, sociais e conceituais, originando-se antes dos 18 anos de idade. É um dos transtornos neuropsiquiátricos mais comuns em crianças e adolescentes, com taxa de prevalência de 5% na população brasileira. A Síndrome do X-Frágil (SXF) é a forma mais frequente, mais pesquisada e melhor documentada de DI herdável em seres humanos. O fenótipo da SXF está associado a mutações no gene FMR1 (Fragile Xlinked Mental Retardation type 1) e abrange um amplo espectro de envolvimento físico e comportamental. É causada por uma expansão de trinucleotídeos CGG no primeiro éxon do gene FMR1 localizado na região Xq27.3 no cromossomo X. Em função de sua diversidade fenotípica, esta doença tem sido subdiagnosticada na população pediátrica. A importância do reconhecimento clínico e diagnóstico específico da SXF vem do fato de que teoricamente todos os casos são hereditários e familiais. Entre as técnicas moleculares utilizadas para o diagnóstico da SXF, a MLPA (Multiplex Ligation-dependent Probe Amplification) tem sido considerada promissora. Nesse contexto, este estudo teve como objetivo validar o diagnóstico genético-molecular de pacientes com suspeita da SXF no Laboratório de Citogenética e Genética Molecular (LaGene) da Secretaria Estadual de Saúde do Estado de Goiás, na cidade de Goiânia, pela técnica de MLPA. Foram selecionados 33 pacientes encaminhados pelo serviço médico da rede pública de saúde ao LaGene com indicação clínica de diagnóstico da SXF. Para realização da análise por MLPA foi utilizado o Kit: Salsa MLPA P106-B1 MRX. Foram obtidas amplificações de apenas 15% dos pacientes. O Kit utilizado não detectou alterações no número de cópias do gene FMR1 em nenhum paciente analisado, sendo necessário a utilização de outros métodos moleculares para confirmação do diagnóstico da SXF. Dessa forma, concluímos que o Kit utilizado não foi específico para detectar alterações no número de cópias do gene FMR1, não se mostrou sensível e específico na detecção de portadores da SXF, sendo considerado oneroso. Assim a técnica de MLPA, com o uso do Kit Salsa MLPA P106-B1 MRX , não deverá ser utilizada para se triar pacientes com suspeita da SXF.

A conversão da proteína prion celular normal (PrPc), cuja função ainda esta sob investigação, para a forma infecciosa (PrPsc) é a causa de algumas doenças neurodegenerativas em humanos e animais. Vários estudos têm sido realizados e mostram que PrPc pode participar de processos normais como memória, estresse oxidativo, neuritogênese e outros. Portanto, a elucidação dos processos de regulação de sua expressão é importante tanto para definir uma estratégia para controlar a infecção quanto para entender melhor a função fisiológica de PrPc. Este trabalho tem por objetivo avaliar a expressão do gene de PrPc, a partir da regulação da atividade de seu promotor frente a drogas que foram eleitas de acordo com a composição dos elementos de resposta a fatores de transcrição nele contidos. Para isto o promotor foi clonado em um vetor contendo o gene \"reporter\" de luciferase, células C6 e PC-12 foram transfectadas e clones com expressão estável de luciferase foram selecionados. Os resultados dos tratamentos dos clones celulares mostram que éster de forbol (TPA) e AMPc induzem a atividade do promotor de 1,5 a 3 vezes, ácido retinóico (RA) diminui esta atividade em cerca de 50% enquanto que NGF e Dexametasona não têm efeito. A dependência da conformação da cromatina na regulação deste gene também foi testada utilizando-se Tricostatina A (TSA), esta droga foi capaz de aumentar de 10 a 4.000 vezes a atividade do promotor, o que foi seguida tanto pela indução de expressão do RNAm quanto da proteína PrPc. Este efeito parece não ser generalizado a todos os promotores uma vez que esta droga não alterou expressão de GAPDH e de &#946;-actina. Quando TPA e AMPc foram associados à TSA uma potencialização do efeito indutor destas drogas foi observada e a associação de RA e TSA mostrou que RA reduz a indução gerada por TSA. Estes novos dados indicam que a regulação de PrPc é extremamente dependente da conformação da cromatina. / Conversion of the cellular normal prion protein (PrPc), whose physiological function is still under investigation, to an infectious form called prion is the cause of some neurodegenerative diseases. Therefore, the elucidation of PrPc gene regulation is important both to define a strategy to control the infection and to better understand PrPc function. We cloned the rat PrPc gene promoter region into a luciferase reporter vector, transfected C6 and PC-12 cells and isolated clones with stable luciferase expression. The phorbol ester TPA and cAMP induced promoter activity by 1.5 to 3 times, retinoic acid decreased it by 50% while NGF and dexamethasone had no effect. We also tested the dependence of chromatin conformation for PrPc promoter activity using Trichostatin A (TSA), which was able to highly increase not only promoter activity but also PrPc rnRNA and protein leveIs. Moreover, the TSA effect seems to be restricted since any alteration was observed regarding GAPDH (Glyiceraldehyde 3-phosphate desydrogenase) and &#946;-actin expression. When cAMP, TPA or retinoic acid were associated with TSA a potentiation of their primary effects was observed. These new data indicate that PrPc gene regulation is highly dependent on disruption of chromatin fiber assembly what permits assess of trascription factors.

A família PUF é um conjunto de proteínas que se ligam a mRNA regulando sua estabilidade e tradução em processos chave do desenvolvimento. Entre as 25 proteínas de Arabidopsis contendo as repetições PUF, três delas, APUM-I, APUM-2 e APUM-3, apresentam ~90% de identidade e colocalizam temporal e espacialmente nos meristemas apical e axilares de caule, zona de elongação da raiz e no periciclo durante a formação de calos e de raízes laterais, além de estames e polens. Ensaios de RT-PCR mostraram que a relação de expressão entre eles é a mesma em todos os órgãos analisados. Além disso, plantas nocautes apum-1- e apum-2- não apresentam fenótipo alterado, sugerindo redundância funcional. Plantas com a expressão dessas proteínas afetadas por RNA antisense apresentaram folhas cloróticas e reduzidas, raízes mais curtas e menos ramificadas e baixa fertilidade, fenótipo semelhante ao de plantas que superexpressam KRP-2, um inibidor de CDK. O transcrito KRP-2 apresenta um elemento de ligação AraPum no 3\'-UTR sugerindo ser um possível alvo para APUM. Em adição, plantas antisense têm aumento de transcritos KRP-2 em relação a selvagens. Assim, foi proposto que essas proteínas agem coordenando a formação de folhas e raízes pela influência na tradução de KRP-2. A função ancestral das proteínas PUF de manter o ciclo celular em detrimento da diferenciação, parece ser conservada em plantas. / The PUF family is a group of conserved proteins that bind to rnRNAs regulating its stability and translation in key developrnental processes. Among the twenty five Arabidopsis proteins with PUF repeats, we found that three highly similar members, APUM-I, APUM-2 and APUM-3 (~90% identity) and co-localize spatially and temporally in the shoot apical and axillaries meristems, root elongation zone and pericycle during callus and lateral root formation, as well as stamens and pollens. RTPCR assays showed that these proteins have similar expression profiles in ali organs analyzed. Moreover, plant apum-1 and apum-2 knockouts have no detectably altered phenotype, suggesting a functional redundancy between them. Plants in which APUM-I, APUM-2 and APUM-3 expression were reduced through antisense RNA, showed chlorotic and reduced leaves, shorter and less ramificated roots and low fertility. This phenotype is similar to that of plants over-expressing the KRP-2 gene, a CDK inhibitor. An AraPum binding element at 3\'-UTR of the KRP-2 transcript suggests that it may be a possible target for APUM. In addition, in comparison to wild-type plants, antisense plants have increased KRP-2 transcripts levels. We proposed that APUM proteins act by coordinating leaf and root formation by way of influencing KRP-2 transiation. The ancestral function of PUF proteins in the maintenance of the cell cycle, to detriment of differentiation, seems to be conserved in plants.

O diabetes mellitus tipo MODY (maturity-onset diabetes of the young) é caracterizado por defeito na secreção de insulina, herança autossômica dominante, hiperglicemia de início precoce e anticorpos anti-células beta negativos. Até o momento, já foram descritas mutações em 14 genes diferentes. A confirmação do diagnóstico de MODY é feita por estudo genético-molecular, tradicionalmente pelo método de Sanger. Diante da grande heterogeneidade genética de MODY, acrescida da dificuldade de estudo de alguns genes por seu grande tamanho e ausência de hotspots, o sequenciamento em larga escala (SLE) mostra-se promissor para uma análise genética custo-efetiva na suspeita de MODY. No Brasil, existem poucos estudos genéticos de rastreamento de MODY e uma alta prevalência de casos sem mutações identificadas nos genes testados (MODY X). Os objetivos deste estudo foram: 1) analisar simultaneamente todos os genes associados a MODY em uma coorte de pacientes com suspeita clínica, utilizando um painel de SLE; 2) avaliar a patogenicidade das variantes alélicas identificadas de acordo com os critérios da Sociedade Americana de Genética Médica (ACMG). Foram selecionados 80 casos com fenótipo de MODY e análise prévia negativa dos 2 genes mais prevalentes, GCK e HNF1A, pelo método de sequenciamento de Sanger. Estes casos foram analisados pelo método de SLE, direcionado para regiões gênicas alvo, por meio de um painel customizado, com sequenciamento simultâneo de 51 genes nucleares e do genoma mitocondrial. As mutações identificadas foram correlacionadas com o fenótipo e foi realizada a segregação familiar. Uma cobertura de no mínimo 20x foi obtida em 98% das regiões alvo. Dos 80 pacientes avaliados, foram detectadas variantes patogênicas/potencialmente patogênicas em 16 casos (20%), confirmando o diagnóstico genético de MODY. Em 15 dos 80 pacientes foram identificadas 16 variantes de significado incerto, restando ainda 42 casos com diagnóstico molecular não esclarecido. Dos 16 casos confirmados geneticamente: 6 foram no gene GCK, 1 no HNF1A, 1 no HNF4A, 1 no HNF1B, 6 em genes raros associados a MODY (1 no ABCC8, 1 no KCNJ11, 1 no PDX1, 2 no PAX4, 1 no NEUROD1), e 1 no NEUROG3, gene associado a diabetes neonatal. Dentre estas 16 variantes, 2 não haviam sido descritas previamente. As 6 mutações no GCK não tinham sido detectadas na análise prévia por: a) 4 casos falso negativos no sequenciamento por Sanger (3 devido ao fenômeno genético de allelic dropout e 1 por erro na leitura do eletroferograma); b) 2 erros na hipótese clínica inicial do subtipo de MODY (baseada no padrão glicêmico e na resposta terapêutica dos pacientes), levando ao sequenciamento prévio de outro gene. A variante no HNF1A não foi detectada previamente por erro na leitura do eletroferograma (caso falso negativo no Sanger). Uma variante foi identificada no gene HNF4A, que não tinha sido sequenciado anteriormente e apresenta fenótipo semelhante ao do HNF1A. O paciente com variante no HNF1B não apresentava relato prévio de cistos renais ou malformações genito-urinárias e por isso não tinha sido considerada a hipótese clínica de MODY5. Além disso, o SLE confirmou o diagnóstico genético de 6 pacientes com variantes em genes de MODY considerados raros, que habitualmente não são sequenciados na rotina de Sanger e ainda detectou uma variante em um gene de diabetes neonatal (sendo necessário maiores estudos para estabelecer uma relação causal com MODY). Em 13 dos 16 casos índices diagnosticados, os familiares encontravam-se disponíveis para exame genético e a co-segregação foi concordante em 8 famílias. Todos os probandos avaliados apresentavam características clínico-laboratoriais típicas de MODY. Os achados deste estudo mostraram que o SLE foi capaz de aumentar a acurácia no diagnóstico de MODY, permitindo a confirmação molecular de 20% dos casos antes negativos e reduzindo, assim, o número de casos MODY X no Brasil. A abordagem genética por painel de SLE para diagnosticar casos com suspeita clínica de MODY mostrou-se promissora para elucidar as bases genéticas desse tipo de diabetes monogênico / Diabetes mellitus type MODY (maturity-onset diabetes of the young) is characterized by defects in insulin secretion, autosomal dominant inheritance, early onset of hyperglycemia, and negative anti-beta cell antibodies. To date, mutations in 14 genes are associated with MODY. The definitive diagnosis relies on genetic tests, traditionally by Sanger sequencing. However, given the genetic heterogeneity of this condition, added to the difficulty of studying some genes due to their large size and lack of hotspots, large-scale sequencing (LSS) seems promising for cost-effective genetic analysis on suspicion of MODY. In Brazil, there are few cohorts screened for MODY and a high prevalence of MODY X (unclear genetic diagnosis). This study aimed to analyze simultaneously all MODY genes in a cohort of clinically suspected patients using a LSS panel; and to evaluate the pathogenicity of identified allelic variants according to the criteria of the American College of Medical Genetics and Genomics (ACMG). We selected 80 subjects with MODY phenotype and negative previous analysis of the 2 most prevalent genes, GCK and HNF1A, by Sanger sequencing method. These cases were analyzed by LSS method, with simultaneous sequencing of target genes. We designed a customized panel, including 51 nuclear genes and the mitochondrial genome. The identified mutations were correlated to the phenotype and family segregation was evaluated. At least 20x coverage was obtained in 98% of the targeted regions. Of 80 evaluated subjects, pathogenic/probably pathogenic variants were detected in 16 cases (20%), confirming the genetic diagnosis of MODY. In 15 of 80 patients, 16 variants of uncertain significance were identified, remaining 42 cases with unexplained molecular diagnosis. Of the 16 genetically confirmed cases: 6 were in the GCK gene, 1 in HNF1A, 1 in HNF4A, 1 in HNF1B, and 6 in rare genes associated with MODY (1 in ABCC8, 1 in KCNJ11, 1 in PDX1, 2 in PAX4 and 1 in NEUROD1), and 1 in NEUROG3, a gene associated with neonatal diabetes. Of these 16 variants, 2 had not been previously described. Those 6 variants in GCK were not detected in the prior analysis because of: a) 4 false negative cases in Sanger sequencing (allelic dropout had occurred in 3 cases and one variant was overlooked, due to electropherogram interpretation failure); b) 2 errors in the initial clinical hypothesis of the MODY subtype (based on the glycemic pattern and therapeutic response), leading to the prior sequencing of another gene. The variant in HNF1A was not previously identified due to misinterpretation in electropherogram (Sanger false negative case). One variant were detected in the HNF4A gene, not formerly sequenced, and had a similar phenotype to that of HNF1A. The patient with HNF1B variant did not have a previous report of renal cysts or genito-urinary malformations and therefore the clinical hypothesis of MODY5 was not considered. In addition, LSS confirmed the genetic diagnosis of 6 patients harboring variants in MODY genes considered to be rare, which are not usually sequenced in the Sanger routine, and also detected one variant in a neonatal diabetes gene (further studies are necessary to establish a causal relationship with MODY). Relatives were available for genetic testing in 13 of these 16 index cases diagnosed and co-segregation was concordant in 8 families. All probands evaluated showed typical clinical and laboratory characteristics of MODY. These study findings showed that targeted-LSS could increase accuracy in MODY diagnosis, enabling molecular confirmation of 20% of previous negative cases and thus reducing the number of MODY X cases in Brazil. The genetic approach of LSS panel to diagnose cases with clinical suspicion of MODY has shown promise for elucidating the genetic basis of this type of monogenic diabetes

Sepsis is a leading cause of death among critically ill patients that results in metabolic alterations including hypercatabolism, lipoatrophy, and muscle wasting, contributing to the development of cachexia. Septic cachexia is associated with loss of body weight, fat mass, and lean mass and dysregulated immune function. There are currently no efficacious treatment strategies for septic cachexia, and nutritional interventions have limited success in preventing hypercatabolic wasting. Pyocyanin is a virulence factor produced by sepsis-causing Pseudomonas aeruginosa that has been shown to activate the aryl hydrocarbon receptor (AhR), increase inflammation, and produce reactive oxygen species. Thus, pyocyanin represents a novel mechanistic target in the development of septic cachexia. In Aim 1, we hypothesized that pyocyanin reduces adipocyte differentiation and activates AhR in vitro and in vivo. In vitro, pyocyanin reduced differentiation of 3T3-L1 cells to adipocytes and promoted expression of proinflammatory cytokines. These effects were associated with activation of AhR. We established an in vivo model of pyocyanin-induced cachexia using repeat intraperitoneal exposure to pyocyanin in male and female C57BL/6J mice. Acutely, pyocyanin reduced differentiation of stem cells isolated from adipose stromal vascular tissue and augmented expression of proinflammatory cytokines. Chronically, pyocyanin reduced body weight and fat mass, which was associated with adipose-specific AhR activation. Pyocyanin had sexually dimorphic effects on lipolysis and adipocyte inflammation. These data suggest a role of pyocyanin in adipose cachexia associated with sepsis. In Aim 2, we hypothesized that pyocyanin activates adipocyte AhR to promote adipose tissue wasting and cachexia. To test this hypothesis, we used a mouse model of adipocyte-specific deficiency of AhR and chronically administered pyocyanin to male and female mice. In male mice with adipocyte AhR deficiency, effects of pyocyanin to promote adipose wasting and cachexia were attenuated. In contrast, female adipocyte AhR deficient mice had an augmented response to pyocyanin to decrease body weight. Results suggest divergent mechanisms of pyocyanin to regulate adiposity and body weight through adipocyte AhR between male and female mice. These data support a role for pyocyanin in the development of adipose cachexia associated with Pseudomonas aeruginosa sepsis that is partially regulated by adipocyte AhR. Targeting pyocyanin’s effects on adipocytes represents a potentially novel therapeutic approach for septic cachexia that could mitigate septic cachexia, a condition associated with increased risk of mortality in this population.

Obesity is a major health problem in the United States and worldwide. It increases the risk for type-2 diabetes and cardiovascular diseases. A chronic low-grade inflammation occurring in white adipose tissue (WAT) is causally linked to the development of insulin resistance (IR), metabolic syndrome and obesity-associated chronic diseases. The aim of this dissertation research was to elucidate the WAT function in metabolic syndrome using genetic (overexpression of an adipose pro-inflammatory hormone, angiotensinogen) and nutritional manipulations/approaches (caloric restriction and omega-3 fatty acids), with specific emphasis on the role of inflammation. Previous research indicates that WAT renin-angiotensin system (RAS) is overactivated in obesity. However, its role in the pathogenesis of IR is hitherto unknown. Using mice overexpressing angiotensinogen (Agt), the only precursor for the hypertensive hormone angiotensin (Ang) II, in WAT, we showed that adipose-specific RAS overactivation leads to systemic IR. This is at least in part due to Ang II, NADPH oxidase and NF-kB-dependent increases in WAT inflammation. Caloric restriction is the main dietary intervention to treat obesity-associated metabolic disorders. While most health agencies recommend a low-fat diet, energy-restricted high-fat diets (HFR) are also claimed to be effective in this regard. Here, we show that weight loss due to HFR is accompanied by improvements of IR but only partial resolution of WAT inflammation. Further, this diet negatively impacted the adipokine profile supporting the current recommendations for low-fat diets. Dietary interventions targeted at reducing WAT inflammation have not been explored in detail. Eicosapentaenoic acid (EPA) is an omega-3 polyunsaturated fatty acid of marine origin with anti-inflammatory properties. We show that EPA is able to both prevent and reverse high-fat diet-induced IR and hepatic steatosis via modulation of WAT inflammation. In conclusion, primary changes occurring in WAT, such as overexpression of Agt, can lead to WAT inflammation and systemic IR. Moreover, nutritional interventions targeting at reducing adiposity (caloric restriction) and inflammation (EPA) can both lead to improvements in systemic IR. Our findings support the current recommendation of low-fat diets for improvement in metabolic profile and show that dietary modulation of WAT function can be used to improve metabolic derangements in obesity.

The ability to extrapolate nutritional intervention data from experimental rodent models to humans requires standardization of dietary design. The inability to translate the level of nutrients from animal models to humans has contributed to contradictory findings between species. It is hypothesized that dietary linoleic acid (LA) promotes chronic and acute diseases by enriching tissues with arachidonic acid (AA), its downstream metabolite. However, levels of LA in rodent diets are notoriously erratic making interspecies comparisons unreliable. Therefore, the ability to extrapolate the biological effects of dietary LA from experimental rodents to humans necessitates an allometric scaling model that is rooted within a human equivalent context. To determine the physiological effect of dietary LA on tissue AA, a mathematical model for extrapolating nutrients based on energy was designed to mimic human equivalent doses. C57BL/6J mice were divided into 9 groups fed a background diet equivalent to that of the US diet (including LA, ALA, AA, EPA, DHA) with supplemental doses of LA (up to 2.3x) or AA (up to 5x). Changes in the phospholipid fatty acid compositions were monitored in plasma and erythrocytes and compared to data from humans supplemented with equivalent doses of LA or AA. Increasing dietary LA had little effect on tissue AA, while supplementing diets with AA significantly increased tissue AA levels, recapitulating results from human trials. Thus, interspecies comparisons for dietary LA between rodents and humans can be achieved when rodents are provided human equivalent doses based on differences in metabolic activity as defined by energy consumption.

Mis-folded proteins and their associated aggregates are a contributing factor in some human diseases. In this study we used the protein lysozyme as a model to define aggregation structures under denaturing conditions. Sasahara et al. (2007), Frare et al. (2009, 2006), and Rubin et al. (2008) observed conditions where heat denatured lysozyme formed fibril structures that were observed to be 8-17 nanometers in diameter under the electron microscope. Even though the crystal structure of lysozyme is known, the denatured form of this protein is still unknown. Therefore, we used Rosetta++ protein folding and blind docking software to create in silico models of the protein at denaturing temperatures and subsequently docked them into aggregates. Here we compare those structures and select forms consistent with the fibril structure from the previous papers. The next step is to be able to use the predicted models of the fibrilar forms of denatured lysozyme to help us understand the exact conformation of fibril structures. This will let us confirm the docking interactions during the fibril aggregation process. The ultimate goal is to use the validated denatured structures to model interactions with heat shock proteins during the dis-aggregation process.

No description available.