Chromosomal anomaly is an abnormality of the number or structure of the chromosome. Based on this, they are classified as either numerical or structural. These anomalies can have a mild or severe effect on the phenotype of the carrier which depends on the chromosomal region involved and the genes implicated. They can be sporadic or inherited. Thus, it is essential to investigate such anomalies both prenatally and postnatally alike. In a standard cytogenetic lab, these anomalies can be detected using low-resolution or high-resolution karyotype, usually by performing GTG (G-bands by trypsin using Giemsa) on chromosomes undergoing mitosis, derived from blood. If higher resolution is required, there are various other molecular cytogenetic techniques available like FISH and microsatellite analysis. More recently, microarrays have opened a new era in the field of molecular genetics by greatly increasing the resolution of screening for copy number gains and losses. Using these techniques, we characterized deletions in the long arm of chromosome 7 in three clinical cases, identified the breakpoint, studied the inheritance pattern and compared our cases with the other cases carrying similar deletion in the literature. It was observed that the deletion was located at 7q36.2, 7q35 and 7q36.1 for cases 1, 2 and 3 respectively. Case 3 also carried a duplication of Xq28.

Une variation du nombre de copies des gènes du chromosome 21 humain (HSA21) entraine des anomalies morphologiques et physiologiques d’un grand nombre d’organes chez les patients. La Trisomie 21, ou syndrome de Down et les monosomies partielles du HSA21 conduisent à des phénotypes complexes et variables. Afin d’identifier les gènes du HSA21 sensibles aux effets de dose, nous avons développé le modèle de monosomie Ms1Yah, pour la région Prmt2-Col6a1 du chromosome murin 10 (MMU10). L’analyse de ce modèle a montré que les souris Ms1Yah développent une altération des réponses inflammatoire et pulmonaire suite à une instillation de lipopolysaccharide (LPS). L’analyse, par Q-PCR, de l’expression des gènes de la région a mis en évidence deux gènes candidats : Prmt2 et S100B. Les lignées déficientes pour ces gènes ont été utilisées pour tester l’implication de Prmt2 et S100B dans la modification de la réponse inflammatoire et pulmonaire en réponse au LPS. Ces travaux ont montré d’une part que Prmt2 intervient dans la régulation de l’expression des cytokines pro-inflammatoires TNF-α et IL-6 de façon dose dépendante, via son rôle inhibiteur de la signalisation NF-κB. D’autre part, S100B ne semble pas intervenir dans la réponse inflammatoire induite par le LPS, alors que son inactivation entraîne une diminution de l’hyper réponse des voies aériennes (HRA) de façon dose dépendante. La réponse inflammatoire serait la résultante du croisement de deux voies de signalisation : LPS-TLR4-NF-κB-Prmt2 et S100B-RAGE-NFκB. Il faudrait que la voie Prmt2 soit en défaut pour observée un effet de S100B dans l’inflammation. L’injection d’un anticorps anti-S100B chez des souris B6 favorise une diminution de l’HRA induite par l’instillation de LPS. L’analyse préliminaire de l’utilisation de cet anticorps dans un modèle d’asthme montre là encore une capacité à diminuer l’HRA pour les doses les plus fortes de métacholine, ce qui laisse entrevoir le potentiel thérapeutique d’une telle molécule. / A copy number variation of genes from human chromosome 21 (HSA21) leads to morphological and physiological anomalies of a great number of organs among patients. Trisomy 21 or Down’s syndrome, and partial monosomy of the HSA21 lead to complex and variable phenotypes. In order to identify dosage sensitive genes, we developed a model of monosomy for the Prmt2-Col6a1 region of the murine chromosome 10 (MMU10). The analysis of this model showed that the Ms1Yah mice develop an alteration af the inflammatory and pulmonary responses after an instillation of LPS. The analysis, by Q-PCR, of the expression of the genes from the Prmt-2Col6a1 area pinpointed two genes as candidates: Prmt2 and S100B. The defectives lines for these genes were used to test the implication of Prmt2 and S100B in the modification of the inflammatory and pulmonary answer after LPS stimulation. This work showed on one hand that Prmt2 is involved in the regulation of the expression of the pro-inflammatory cytokines TNF-α and IL-6 in a dose dependant manner, via its inhibitor role in the NF-κB signalization. On the other hand, S100B does not seem to be involved in the inflammatory response induced by the LPS, whereas its inactivation induces a reduction in the hyper response of the airway, in a dose dependant manner. The inflammatory response would be the consequence of the crossing of two ways of signalization: LPS-TLR4-NF-κB-Prmt2 and S100B-RAGE-NF-κB. It would be necessary that the Prmt2 ways be defective to observe an effect of S100B in inflammation.The injection of an anti-S100B antibody in B6 mice showed a reduction in the HRA induced by an instillation of LPS. The preliminary analysis of the use of this antibody in a murin asthma model support its capacity to decrease the HRA for the strongest amounts of metacholin, showing the therapeutic potential of the molecule.

No description available.

Submitted by Fabio Sobreira Campos da Costa (fabio.sobreira@ufpe.br) on 2016-03-30T13:52:07Z No. of bitstreams: 2 license_rdf: 1232 bytes, checksum: 66e71c371cc565284e70f40736c94386 (MD5) Tese_Adriana_Bispo_final_ficha catalografica.pdf: 4400523 bytes, checksum: b3e9eb79c58483144a4659be5ab2d45c (MD5) / Made available in DSpace on 2016-03-30T13:52:07Z (GMT). No. of bitstreams: 2 license_rdf: 1232 bytes, checksum: 66e71c371cc565284e70f40736c94386 (MD5) Tese_Adriana_Bispo_final_ficha catalografica.pdf: 4400523 bytes, checksum: b3e9eb79c58483144a4659be5ab2d45c (MD5) Previous issue date: 2015-09-15 / A síndrome de Turner (ST) é caracterizada primariamente pelo cariótipo 45,X, mas podem ocorrer linhagens celulares incluindo o cromossomo Y. A precisa identificação do cromossomo Y nessas pacientes é de grande importância clínica devido a um aumento no risco de tumores gonadais. A alta frequência de mosaicismo na ST faz dessa síndrome um importante modelo para investigação do efeito dos polimorfismos dos genes da rota do folato como fatores de risco à não disjunção cromossômica somática. Alterações no metabolismo do folato podem promover aneuploidias por um efeito indireto sobre os padrões de metilação do DNA. Neste trabalho reportamos a frequência de mosaicismo críptico do cromossomo Y e sua associação clínica, como também a descrição de uma alteração cromossômica rara. Adicionalmente, foi investigada uma possível associação entre os polimorfismos de genes da rota do folato e o risco de não disjunção cromossômica somática na ST. A presença de mosaicismo oculto do cromossomo Y foi detectada em 2,7% dos casos, os quais mostraram genitália feminina normal sem sinais de virilização ou desenvolvimento tumoral. Assim, a busca de sequências do Y deve ser realizada na ST independente do cariótipo e/ou sinais clínicos. Não foi possível estabelecer uma associação entre os polimorfismos dos genes MTHFR, MTR, RFC1 e TYMS, independentes ou combinados, modulando o risco de não disjunção somática na ST, demostrando que polimorfismos nesses genes, envolvidos na rota do folato, podem não representar uma importante contribuição para os mecanismos de geração das aneuploidias. / Turner syndrome (TS) is primarily characterized by the 45,X karyotype, but can occur cell lines including the Y-chromosome. The precise identification of Y-chromosome in TS patients is of great clinical importance due to an increased risk of gonadal tumors. The high frequency of mosaicism in TS makes this syndrome an important model to investigate the effect of genetic polymorphisms in folate pathway as risk factors to somatic non-disjunction. Changes in folate metabolism can promote aneuploidies by an indirect effect on the DNA methylation patterns. In this work was reported the frequency of Y-chromosome hidden mosaicism and its clinical association, and also described a rare chromosomal alteration. Additionally, a possible association between gene polymorphisms in folate pathway and the risk of somatic chromosome non-disjunction in TS was investigated. The presence of hidden Y chromosome mosaicism was detected in 2.7% of cases, which showed normal female genitalia without signs virilization or tumor development. Thus, the search for Y sequences should be held at TS regardless of the karyotypes and/or clinical signs. We could not establish an association between polymorphisms of MTHFR, MTR, RFC1 and TYMS genes, independent or combined, modulating the risk of somatic non-disjunction in TS, showing that polymorphisms in these genes, involved in folate metabolism, may not represent an important contribution to the generation mechanisms of aneuploidies.

No description available.

Gliomas are brain tumors arising from neuroglia. In most cases astrocytic or oligodendroglial component is the main element of the tumor. Non-random chromosomal abberations are found in tumor cells as was revealed previously. The aim of this study was a fluorescence in-situ hybridisation analysis (FISH) of tissue samples obtained during neurosurgical procedures, determine the frequence of selected chromosomal abberations, further correlation with morphological and clinical data and statistical analysis of the results. During six years 264 tissue samples were gained in which FISH with defined probes was performed. The acquired results were compared with histological analysis and selected clinical data (age, Karnofsky score, extent of resection, overall survival). The whole series was divided into 7 groups by tumor type for further statistical analysis. In every group median and mean survival time was calculated, Kaplan-Meier analysis was focused on influence of selected parameters to overall survival. In some categories Cox regression model was created to achieve a hazard ratio of selected parameters. In WHO Grade II and III tumors the risk of malignant progression and tumor upgrading is significantly higher in comparison with samples where specific abberations were not found (EGFR amplification, CDKN2A and...

Gliomas are brain tumors arising from neuroglia. In most cases astrocytic or oligodendroglial component is the main element of the tumor. Non-random chromosomal abberations are found in tumor cells as was revealed previously. The aim of this study was a fluorescence in-situ hybridisation analysis (FISH) of tissue samples obtained during neurosurgical procedures, determine the frequence of selected chromosomal abberations, further correlation with morphological and clinical data and statistical analysis of the results. During six years 264 tissue samples were gained in which FISH with defined probes was performed. The acquired results were compared with histological analysis and selected clinical data (age, Karnofsky score, extent of resection, overall survival). The whole series was divided into 7 groups by tumor type for further statistical analysis. In every group median and mean survival time was calculated, Kaplan-Meier analysis was focused on influence of selected parameters to overall survival. In some categories Cox regression model was created to achieve a hazard ratio of selected parameters. In WHO Grade II and III tumors the risk of malignant progression and tumor upgrading is significantly higher in comparison with samples where specific abberations were not found (EGFR amplification, CDKN2A and...

Rearranjos subteloméricos submicroscópicos são uma causa importante de malformações congênitas múltiplas e retardo mental. Recentemente, os mecanismos de origem de rearranjos subteloméricos começaram a ser investigados. O seqüenciamento dos pontos de quebra de rearranjos cromossômicos em 1p36 revelou predomínio por mecanismos de reparo não exclusivos. Rearranjos constitucionais em 1p36 são as alterações subteloméricas mais comuns e incluem deleções terminais simples, cromossomos derivados, deleções intersticiais e rearranjos complexos. Estes rearranjos resultam em um padrão específico de malformações e distúrbios do desenvolvimento neuropsicomotor que caracterizam a síndrome de monossomia 1p36. Os genes causativos ainda não foram identificados e a expressão fenotípica pode ser em função da haploinsuficiência de genes contíguos ou pelo mecanismo de efeito de posição. Obesidade e hiperfagia são características descritas em ~15% dos casos. Investigamos por MLPA (Multiplex ligation-dependent probe amplification) a presença de rearranjos no segmento cromossômico 1p36 em um grupo de 154 pacientes com obesidade e hiperfagia e testes genéticos negativos para a síndrome de Prader-Willi (PWS), e outro grupo de 83 pacientes encaminhados para estudos cromossômicos por diversos motivos. A estratégia de MLPA utilizada permitiu identificar em nove pacientes diferentes tipos de rearranjos na região subtelomérica 1p36. Para investigar os mecanismos de quebra, reparo e estabilização cromossômica envolvidos em rearranjos subteloméricos, linhagens celulares de seis pacientes contendo rearranjos constitucionais em 1p36 foram desenvolvidas. A clonagem e seqüenciamento das junções dos pontos de quebra de um rearranjo complexo e três translocações não recíprocas identificaram similaridades nas junções que sugerem o reparo por NHEJ (Nonhomologous end-joining) como o mais provável mecanismo de origem destes rearranjos. Duas deleções terminais aparentemente simples também foram investigadas e o refinamento dos pontos de quebra identificou dois intervalos genômicos distintos contendo duplicações segmentares específicas de 1p36 com 90-98% de homologia. Estas duplicações segmentares podem ter estimulado ou sido usadas como substratos no mecanismo de reparo do DNA. Nossos achados reforçam a associação da monossomia 1p36 com obesidade e hiperfagia e sugerem que estas características estejam freqüentemente associadas com fenótipos atípicos/leves e deleções submicroscópicas com 2-3 Mb de extensão. Sugerimos o uso de MLPA como um método alternativo rápido de diagnóstico para detectar e caracterizar rearranjos em 1p36. / Subtelomeric abnormalities are an important cause of mental retardation and birth defects. The mechanisms involved in the formation of subtelomeric rearrangements are now beginning to be elucidated. Breakpoint sequencing analysis of 1p36 rearrangements has revealed prevalence of different nonexclusive recombination-repair mechanisms. Rearrangements of 1p36 are the most frequently detected subtelomeric abnormalities and include different-sized simple terminal deletions, derivative chromosomes, interstitial deletions and complex rearrangements. These rearrangements have been reported to result in the specific pattern of malformation and neurodevelopmental disabilities that characterizes monosomy 1p36 syndrome. Thus far, no genes have been conclusively determined to be causative. Besides, it is still not known if a mechanism of haploinsufficiency or position effect that influences phenotype expression in this commonest terminal deletion syndrome. Obesity and hyperphagia have been reported to occur in ~15% of cases. We have used multiplex ligation-dependent probe amplification (MLPA) to screen for monosomy 1p36 in a group of 154 hyperphagic and obese, PWS negative patients and in a separate group of 83 patients sent to investigate a variety of other conditions. The MLPA strategy used allowed the identification of a diversity of rearrangements in nine subjects. In order to gain further insights into the mechanisms of chromosome breakage, repair, and stabilization mediating subtelomeric rearrangements in humans, we have used cell lines containing constitutional rearrangements of 1p36 of six patients. Cloning of the breakpoint junctions in a complex rearrangement and three non-reciprocal translocations revealed similarities at the junctions that suggest NHEJ as the most likely mechanism of DNA repair that generated these rearrangements. Additionally, two apparently pure terminal deletions were also investigated and the refinement of the breakpoint regions identified two distinct genomic intervals ~25-kb apart, each containing a series of 1p36 specific segmental duplications with 90-98% identity. These segmental duplications might have been stimulated or used as substrate for a recombination-repair mechanism. Our work reinforces the association between monosomy 1p36 and obesity and hyperphagia, and further suggests that these features might be usually associated with an atypical/mild phenotype in addition to a submicroscopic deletion of ~2 to 3 Mb in size. We suggest the use of MLPA as an alternative method for high-throughput detection and delineation of rearrangements at 1p36.

Rearranjos subteloméricos submicroscópicos são uma causa importante de malformações congênitas múltiplas e retardo mental. Recentemente, os mecanismos de origem de rearranjos subteloméricos começaram a ser investigados. O seqüenciamento dos pontos de quebra de rearranjos cromossômicos em 1p36 revelou predomínio por mecanismos de reparo não exclusivos. Rearranjos constitucionais em 1p36 são as alterações subteloméricas mais comuns e incluem deleções terminais simples, cromossomos derivados, deleções intersticiais e rearranjos complexos. Estes rearranjos resultam em um padrão específico de malformações e distúrbios do desenvolvimento neuropsicomotor que caracterizam a síndrome de monossomia 1p36. Os genes causativos ainda não foram identificados e a expressão fenotípica pode ser em função da haploinsuficiência de genes contíguos ou pelo mecanismo de efeito de posição. Obesidade e hiperfagia são características descritas em ~15% dos casos. Investigamos por MLPA (Multiplex ligation-dependent probe amplification) a presença de rearranjos no segmento cromossômico 1p36 em um grupo de 154 pacientes com obesidade e hiperfagia e testes genéticos negativos para a síndrome de Prader-Willi (PWS), e outro grupo de 83 pacientes encaminhados para estudos cromossômicos por diversos motivos. A estratégia de MLPA utilizada permitiu identificar em nove pacientes diferentes tipos de rearranjos na região subtelomérica 1p36. Para investigar os mecanismos de quebra, reparo e estabilização cromossômica envolvidos em rearranjos subteloméricos, linhagens celulares de seis pacientes contendo rearranjos constitucionais em 1p36 foram desenvolvidas. A clonagem e seqüenciamento das junções dos pontos de quebra de um rearranjo complexo e três translocações não recíprocas identificaram similaridades nas junções que sugerem o reparo por NHEJ (Nonhomologous end-joining) como o mais provável mecanismo de origem destes rearranjos. Duas deleções terminais aparentemente simples também foram investigadas e o refinamento dos pontos de quebra identificou dois intervalos genômicos distintos contendo duplicações segmentares específicas de 1p36 com 90-98% de homologia. Estas duplicações segmentares podem ter estimulado ou sido usadas como substratos no mecanismo de reparo do DNA. Nossos achados reforçam a associação da monossomia 1p36 com obesidade e hiperfagia e sugerem que estas características estejam freqüentemente associadas com fenótipos atípicos/leves e deleções submicroscópicas com 2-3 Mb de extensão. Sugerimos o uso de MLPA como um método alternativo rápido de diagnóstico para detectar e caracterizar rearranjos em 1p36. / Subtelomeric abnormalities are an important cause of mental retardation and birth defects. The mechanisms involved in the formation of subtelomeric rearrangements are now beginning to be elucidated. Breakpoint sequencing analysis of 1p36 rearrangements has revealed prevalence of different nonexclusive recombination-repair mechanisms. Rearrangements of 1p36 are the most frequently detected subtelomeric abnormalities and include different-sized simple terminal deletions, derivative chromosomes, interstitial deletions and complex rearrangements. These rearrangements have been reported to result in the specific pattern of malformation and neurodevelopmental disabilities that characterizes monosomy 1p36 syndrome. Thus far, no genes have been conclusively determined to be causative. Besides, it is still not known if a mechanism of haploinsufficiency or position effect that influences phenotype expression in this commonest terminal deletion syndrome. Obesity and hyperphagia have been reported to occur in ~15% of cases. We have used multiplex ligation-dependent probe amplification (MLPA) to screen for monosomy 1p36 in a group of 154 hyperphagic and obese, PWS negative patients and in a separate group of 83 patients sent to investigate a variety of other conditions. The MLPA strategy used allowed the identification of a diversity of rearrangements in nine subjects. In order to gain further insights into the mechanisms of chromosome breakage, repair, and stabilization mediating subtelomeric rearrangements in humans, we have used cell lines containing constitutional rearrangements of 1p36 of six patients. Cloning of the breakpoint junctions in a complex rearrangement and three non-reciprocal translocations revealed similarities at the junctions that suggest NHEJ as the most likely mechanism of DNA repair that generated these rearrangements. Additionally, two apparently pure terminal deletions were also investigated and the refinement of the breakpoint regions identified two distinct genomic intervals ~25-kb apart, each containing a series of 1p36 specific segmental duplications with 90-98% identity. These segmental duplications might have been stimulated or used as substrate for a recombination-repair mechanism. Our work reinforces the association between monosomy 1p36 and obesity and hyperphagia, and further suggests that these features might be usually associated with an atypical/mild phenotype in addition to a submicroscopic deletion of ~2 to 3 Mb in size. We suggest the use of MLPA as an alternative method for high-throughput detection and delineation of rearrangements at 1p36.

Objetivos: Descrever a frequência, e investigar fatores preditivos, de óbito fetal espontâneo (OF), em gestações com anomalias cromossômicas. Métodos: Trata-se de estudo retrospectivo, abrangendo o período de novembro de 2004 a maio de 2012, realizado na Clínica Obstétrica do Hospital das Clínicas da Faculdade de Medicina da Universidade de São Paulo. Foram incluídas gestações únicas com diagnóstico pré-natal de trissomia dos cromossomos 21 (T21), 18, 13 (T13/18) e monossomia do X (45X), realizado até a 26ª semana de gestação. Resultados: Foram incluídas 92 gestantes com idade materna média de 32,7 ± 8,7 anos. O diagnóstico das anomalias cromossômicas (T21 n=36, T13/T18 n=25, 45X n=31) foi realizado em idade gestacional média de 18,3 ± 3,7 semanas, por meio de biópsia de vilo corial (n=22, 24%), amniocentese (n=66, 72%) e cordocentese (n=4, 4%). Malformação major estava presente em 45 (49%); e hidropisia foi identificada em 32 (35%) fetos, sendo mais frequente no grupo 45X (n=24/31 (77%) versus T21: n=6/36 (17%) e T13/18: n=2/25 (8%), p < 0,001). Exame ecocardiográfico fetal especializado foi realizado em 60% (55/92) das gestações. Dessas, 60% (33/55) apresentaram alterações na morfologia e/ou função cardíaca, sendo o achado mais frequente a comunicação interventricular (39%). Fetos com T13/18 apresentaram incidência maior de anomalias cardíacas (60% versus 25% (T21) e 29% (45X), p= 0,01). Óbito fetal ocorreu em 55 (60%) gestações e foi mais frequente no grupo 45X (n=26/31 (84%) versus T21: n=13/36 (36%) e T13/18: n=16/25 (64%), p < 0,01). A análise multivariada stepwise demonstrou associação entre hidropisia e OF em fetos com trissomia 21 (LR= 4,29; IC95%= 1,9-8,0, p< 0,0001). Em fetos com monossomia X, a presença de alterações ecocardiográficas esteve associada com menor risco de OF (LR= 0,56; IC95% = 0,27-0,85, p= 0,005). Não foram identificados fatores preditores no grupo T13/18. Conclusão: A letalidade intrauterina de fetos com anomalias cromossômicas é elevada. A presença de hidropisia aumenta o risco de óbito fetal, em gestações com trissomia 21. Enquanto, em gestações com monossomia X, a ocorrência de alterações ecocardiográficas reduz esse risco / Objectives: To describe the frequency, and associated factors, of intrauterine fetal death (IUD), in pregnancies with chromosomal abnormality. Methods: This was a retrospective (November 2004 to May 2012) performed at de department of obstetrics, Hospital das Clínicas, São Paulo University Medical School. Inclusion criteria were: singleton pregnancies with prenatal diagnosis of trisomy 21 (T21), 18, 13 (T13/18) and X monosomy (45X), performed up to 26 weeks gestation. Results: 92 women were included in the study with a mean maternal age of 32.7 ± 8.7 years. Fetal chromosomal abnormalities (T21 n=36, T13/T18 n=25, 45X n=31) were diagnosed at a mean gestational age of 18.3 ± 3.7 weeks, by chorionic villus sampling (n=22, 24%), amniocentesis (n=66, 72%) and cordocentesis (n=4, 4%). Major fetal structural abnormality was present in 45 (49%) cases; hydrops was diagnosed in 32 (35%) fetuses, and was more common in 45X group (n=24/31 (77%) versus T21: n=6/36 (17%) and T13/18: n=2/25 (8%), p < 0.001). Specialist fetal echocardiography was performed in 55 (60%) pregnancies and showed structural and/or functional abnormalities in 33 (60%) fetuses; ventricular septal defect was the most common finding (39%). T13/18 fetuses showed a higher incidence of cardiac abnormalities (60% versus 25% (T21) and 29% (45X), p= 0.01). IUD occurred in 55 (60%) pregnancies and was more common in 45X group (n=26/31 (84%) versus T21: n=13/36 (36%) and T13/18: n=16/25 (64%), p < 0.01). Stepwise logistic regression analysis demonstrated an association between hydrops and IUD in T21 pregnancies (LR= 4.29; 95%CI= 1.9-8.0, p < 0.0001). In 45X pregnancies, cardiac abnormalities were associated with a lower risk of IUD (LR= 0.56; 95%CI = 0.27-0.85, p= 0.005). No predictors of IUD were identified in T13/18 group. Conclusion: Intrauterine death rate is high in pregnancies with a fetal chromosomal abnormality. Presence of hydrops increases the risk of this complication in trisomy 21 fetuses. Whereas the presence of a cardiac abnormality is protective in X monosomy pregnancies