The purpose of the study was to evaluate the wood yield and stem quality of (Norway Spruce (Picea abies) provenances from Jurbarkas, Telšiai, Kaunas and Alytus and to assess the transfer effect. to Kaunas region. The problem was the following: incase of shortage of Norway spruce seeds in the local Dubrava forest enterprise, from where it would be profitable to introduce seeds? The object of the study: experimental plantation of Norway spruce in Vaišvydava forest district of Dubrava experimental forest enterprise established in 1995. Trees of four provenances are tested: Jurbarkas, Telšiai, Vaišvydava and Alytus. The total area of experimental plantation is 1.2 hectares. The work methods and technical means: the age of young trees was 11 years at the time of measurements. The following characteristics were measured: height young trees, the number of leader shoots, the straightness of stem, time of budburst (the beginning of the growth period). The height of trees was measured with telescopic measurement instrument; qualitative traits were evaluated according to the class scales used in the genetic research. The results were the following: It was established that the descendants of the provenance of Mociškiai were the tallest and of the best stem quality. The descendants of the provenance of Punia were in the second place by wood yield and quality. This advantage can be explained by good genetic quality of the tested material and the positive effect of transfer. The descendants... [to full text]

Pleistocene New Jersey shelf sedimentology is strongly influenced by glacially driven sea level changes. A combination of regressive shoreline processes, subaerial exposure, fluvial downcutting, and deposition and reworking during transgression has influenced the NJ shelf sediment composition. Sediment provenance and transport history may be determined on a shelf environment through analysis of grain size distribution, heavy mineral content, magnetic mineral concentrations, and isotopic dating methods. A combination of surface grab and stratigraphic samples were analyzed within the study area. Relatively high percentages of heavy minerals were found in the 2 phi and 3 phi size fractions and hornblende grains provided K-Ar age values indicating two groups of sediment sources. The first source is Grenville with apparent ages above 900 Ma deposited during marine OIS 1. The second source is a mixed assemblage of Grenvillian and Paleozoic sources deposited during marine OIS 3, with apparent ages of approximately 850 ± 20 Ma.

Objective of the study is to assess wood yield and quality of Polish Norway spruce provenances and transfer effect in comparison with the local provenances. Object of the study is experimental plantation established in Kazlų Rūda EFE, Agurkiškės forest district (62 comp.., 43 plot). Six southern Polish proveniences were from Istebna, Ustron, Ujstoly ir Lagow forest districts and three open-pollinated families from Girionys seed orchard and progeny from the local Agurkiškės forest district were tested. Area of the experimental plantations 1,8 ha. Methods: quantitative and qualitative traits of the trees in the plantation were assessed by using the following tools and methods: height was measured with a telescopic pole, diameter with calipers and the quantitative traits were assessed by the standard methods used in genetics and breeding. Results: this study showed that growth rate and wood yield of the southern provenances were higher than of the progenies of the selected plus trees of Lithuanian origin. However, wood yield of soother Polish provenances was significantly higher than that of the local regular stands of Agurkiškių provenance. This indicates, that the seed orchard material is superior over the material form regular unimproved forests stands. This difference may be caused not only by the geographical transfer effect but also related to genetic quality of the original stands. Polish provinces possessed a lower number of forked trees but their stems were less... [to full text]

The objective of this study was to develop and implement an advanced generation breeding programme at the Institute for Commercial Forestry Research (ICFR) to manage and integrate the many and disjunct breeding and production populations of Eucalyptus nitens established by various entities over the past 30 years at multiple sites in South Africa. To develop such a breeding strategy, a good understanding of the population genetics, and the underlying assumptions made by tree breeders about the species, was needed. Eucalyptus nitens is an important forestry species grown for pulp and paper production in the temperate, summer rainfall regions of South Africa. A tree improvement programme has been ongoing at the ICFR for three decades. The measurement and statistical analysis of data from eight F1 trials established during the 1980s and 1990s have enabled characterisation of the ICFR’s breeding population. Provenance testing showed that the more northerly New South Wales (Australia) Eucalyptus nitens provenances of Barren Mountain and Barrington Tops are distinctly better suited to growth in South Africa than the southern New South Wales provenances and the Victorian provenances, Penny Saddle and Bendoc. Generally, the species was not badly affected by Coniothyrium canker. High Type B genetic correlations for all sites pairs, except one comparison, ranged from 0.75 to 0.99 for diameter at breast height at 76 to 113 months, indicating very little, or no, genotype by environment interaction for diameter at breast height for the genotypes tested in the F1 generation. Narrow sense heritability estimates ranged from 0.01 to 0.34, indicating that the species provides a breeding opportunity for improvement of diameter growth. High genetic correlations of greater than 0.90 between diameter measurements at 52 to 62 months after establishment and diameter measurements at 94 or 113 months were found, indicating that selections can be made reliably at five or six years. Diameter measurements at both 60 months and full rotation (94 to 113 months) were highly correlated with the final height measurements in these trial series (rg > 0.71 and > 0.83, respectively). Predicted genetic gains for the F2 over the F1 generation were highest in the trials at Goedehoop and Arthur’s Seat, with predicted increases in diameter at breast height of 3.07 cm (17.1%) and 3.17 cm (20.7%), respectively, at full rotation. Genetic improvement in the species has been slower than anticipated due to delayed and infrequent flowering and seed production. Three genetic gain trials were established, firstly, to quantify the gains that have been made in the first generation of improvement in the breeding programme; and secondly, to establish whether a number of seed source and orchard variables influence the performance of the progeny. These variables were: the number of flowering trees in the seed orchard, year of seed collection, seed orchard origin and composition of seed orchard seed bulks. Diameter at breast height and tree height were measured in the trials at between 87 and 97 months after establishment, and timber volumes and survival were calculated. Improved seed orchard bulks performed significantly better (p < 0.01) than unimproved controls in the field trials, and genetic gains ranging from 23.2 to 164.8 m3ha-1 were observed over the unimproved commercial seed. There were significant differences (p < 0.01) in progeny growth between the levels of flowering, with higher levels of flowering (R 40 %) producing substantially greater progeny growth than lower flowering levels (S 20 %). The seed orchard origin had no effect on progeny growth in this trial series. This suggests that seed collected from any of the four seed orchards tested will produce trees with significant improvement in growth. Various scenarios investigating a range of assumptions were developed and used to predict genetic gain in the F2 populations. These were compared with realised gains achieved in the genetic gain trials. The family nested within provenance scenarios proved to be closer to realised gain than the family across provenance predictions. Two scenarios were used for family nested within provenance: Firstly, actual flowering for family nested within provenance; and secondly, estimated flowering after a 30% roguing of poor families. For both scenarios, a coefficient of relationship of 0.33 predicted gains closest to the realised gains. Indications were that the effects were additive, and that very little or no heterosis had occurred. The statistical information suggested that outcrossing in the seed orchards was > 80%. This study provides an objective and quantitative assessment of the underlying assumptions used for estimating genetic parameters, and predicting gain in this population of Eucalyptus nitens. At the same time that genetic gain trials were established, F2 trials were planted, using seedlots collected from F1 seed orchards. Analysis of the two F2 trials showed that realised gains for diameter at breast height at 87 months were close to the predicted values and ranged from 1.02 cm to 1.90 cm. Two exceptions were the sites at Helvetia and Babanango, where gains were under- and over-predicted, respectively. Realised heritability estimates, which are related directly to the realised gain and the actual selection intensities used in the seed orchards, reflected this trend. Estimation of breeding values allowed for selection of elite individuals in top families. Both grand-maternal provenance origin and F1 maternal effects were significant in the F2 trials. A Type B genetic correlation of 0.61 for diameter at 87 months indicated the possible presence of genotype by environment interactions for the two F2 sites. A low narrow sense heritability estimate of 0.06 for diameter at breast height at 87 months at one F2 site indicated that more emphasis should be placed on family information rather than individual information at this site. A heritability estimate of 0.17 for diameter at breast height at 87 months at the second site, however, indicated that further improvement is possible in this population of Eucalyptus nitens. Modelling of predicted genetic gain using various breeding strategy scenarios can be a useful tool in assisting with the decision on which strategy or management plan will deliver the most genetic gains per unit time. Such modelling, using the parameters established in the first part of the study, played an important role in developing the advanced generation breeding strategy for Eucalyptus nitens. In addition, the modelling exercise highlighted various management options which could be used to increase gains in the existing production populations or orchards. Indications are that additional roguing of 1) existing Clonal Seed Orchards based on results of F2 trials (i.e., backward selection); and 2) F1 Breeding Seed Orchards based on stricter provenance selection, will markedly increase the quality of the seed produced from these orchards within one season. This study also highlighted the importance of shortening the breeding cycle in Eucalyptus nitens, particularly in view of the delays caused by reticent flowering and seed production in the species. The information and understanding gathered from this study led to the development of a proposal for an advanced generation breeding strategy in Eucalyptus nitens. This proposal uses parental reconstruction of open-pollinated progeny to secure pedigree information of forward selections, thus combining the benefits of increased genetic gain with a shortened breeding cycle. Recommendations on the management and adaption of current production populations to increase gains have been made, because establishment and management of improved material in seed orchards to ensure a sustainable supply of improved seed to the South African forestry industry, is a key objective of the ICFR Eucalyptus nitens breeding programme. / Thesis (Ph.D.)-University of KwaZulu-Natal, Pietermaritzburg, 2013.

A range-wide collection of Juglans regia seeds was undertaken in autumn 1997 from 12 countries, including 25 provenances and 375 half-sib progenies. 2200 seedlings were produced using innovative nursery techniques. The seedlings were planted in three provenance trials in southern England in 1999, the largest of which acted as a combined provenance/progeny trial. After one growing season, survival was 98.9 %, mean height growth 35 cm, and mean stem diameter increment 5 mm. Provenance differences for both height and stem diameter increment were highly significant (p<0.001). There were no significant genotype × environment interactions. Flushing assessments revealed few significant differences between provenances and flushing was complete by early April. Family heritability for tree height was 0.19 at one site and, with combined selection, genetic gain was estimated at 8 %. The effects of three types of treeshelter and a stumping treatment on walnut establishment were tested over three growing seasons. Treeshelters were found beneficial to height increment. However, 120 cm tall shelters promoted early flushing, and consequent risk of increased frost damage, and caused more stem die-back than 75 cm shelters. Stumping promoted rapid early height increment but gave no longer-term benefit. The crown (cd) and stem (dbh) diameter at breast height relationship of open growing trees in Britain was assessed and was highly significant (r2 = 0.96, p<0.001). The regression equation (cd = 2.71 + 17.6dbh) permitted the estimation of suitable planting densities for the provenance trials and the calculation of a thinning regime. Isozyme analysis of the 375 genotypes identified 20 loci in 15 enzyme systems with seed embryo extracts. Using young leaf extracts, the polymorphic locus Pgm-1 indicated low expected heterozygosity of 0.06 both within populations and at the species level. FST and GST estimates, both 0.05, indicated high uniformity among populations. Genetic distance estimates did not identify significant clustering consistent with geographic origin.

Personal archives are those created by individuals for their own individual needs and purposes. As a category of archive, personal archives are under-studied and under-represented in the archival literature. This dissertation seeks to fill some of the gaps identified by archival theorists by investigating the nature of personal archives and the application of foundational principles of archival theory to them. Focusing on the archives of a particular sub-set of creators, literary authors, I question both recent and persistent trends toward a psychological or character-based approach to personal archives, and call attention to the limitations of past and current interpretations of the principle of provenance (and its sub-principles, the principle of respect for original order and the principle of respect des fonds) as it is understood in relation and applied to writers’ archives. I argue that archival theory is too strongly oriented toward the creator of archives as referent rather than to the archive itself as referent, and propose the need for a stronger focus, both in theory and in practice, on the various individuals and processes that shape an archive. Finally, I call for more candid descriptive practices that better convey to researchers the complicated life histories of the archives they consult and that admit the degree to which archives are the self-conscious constructs of a variety of archival agents.

Personal archives are those created by individuals for their own individual needs and purposes. As a category of archive, personal archives are under-studied and under-represented in the archival literature. This dissertation seeks to fill some of the gaps identified by archival theorists by investigating the nature of personal archives and the application of foundational principles of archival theory to them. Focusing on the archives of a particular sub-set of creators, literary authors, I question both recent and persistent trends toward a psychological or character-based approach to personal archives, and call attention to the limitations of past and current interpretations of the principle of provenance (and its sub-principles, the principle of respect for original order and the principle of respect des fonds) as it is understood in relation and applied to writers’ archives. I argue that archival theory is too strongly oriented toward the creator of archives as referent rather than to the archive itself as referent, and propose the need for a stronger focus, both in theory and in practice, on the various individuals and processes that shape an archive. Finally, I call for more candid descriptive practices that better convey to researchers the complicated life histories of the archives they consult and that admit the degree to which archives are the self-conscious constructs of a variety of archival agents.

The objective of this dissertation is to apply radiogenic isotopes extracted from marine sediments to investigate aspects of global climate change over the past 25 kyr, especially ocean and atmospheric circulation, continental aridity, and hydrology. By focusing on the geochemical records from marine sediments and authigenic precipitates preserved in these sediments, I aim to better understand climate forcing and feedback mechanisms, which are critical to models of climate change. Firstly, I have investigated the dynamics of the Intertropical Convergence Zone (ITCZ) over the past 25 kyr in the eastern equatorial Pacific by fingerprinting dust provenance using radiogenic isotopes (Nd, Sr, Pb) and trace elements (Fe, Si, Ba) in the detrital fraction of marine sediments along a transect across the equator at 110ºW. Results from this study suggest no glacial-Holocene difference in the mean position of the ITCZ, but a more northerly, possibly stronger, deglacial ITCZ. Secondly, I have applied Nd isotope ratios from authigenic precipitates extracted from marine sediments and those from fish debris to trace past intermediate water circulation changes on glacial-interglacial and millennial timescales. The authigenic Nd isotope record from the Florida Straits suggests a reduced circulation of Antarctic Intermediate Water (AAIW) into the tropical North Atlantic during the Younger Dryas (YD) and Heinrich 1 (H1) events, associated with a significant reduction in AMOC. However, in the Southern Caribbean, apparent deviations in the Nd isotopic compositions between the acid-reductive leachate and the fish debris suggest that the leachate method is not reliable at this location and that it needs to be tested in more detail in various oceanic settings. In the Southern Caribbean, the fish debris Nd isotope results suggest a two-step recovery of the upper North Atlantic Deep Water during the last deglaciation. Comparing our new fish debris Nd isotope data to authigenic Nd isotope data for sediments from the Florida Straits and the Demarara Rise, we propose that glacial and deglacial AAIW does not penetrate beyond the lower depth limit of modern AAIW in the tropical North Atlantic. Both studies suggest a tight connection between Atlantic intermediate water circulation variability and high-latitude North Atlantic climate change.

This project presents a Materials Informatics Workbench that resolves the challenges confronting materials scientists in the aspects of materials science data assimilation and dissemination. It adopts an approach that has ingeniously combined and extended the technologies of the Semantic Web, Web Service Business Process Execution Language (WSBPEL) and Open Archive Initiative Object Reuse and Exchange (OAI-ORE). These technologies enable the development of novel user interfaces and innovative algorithms and techniques behind the major components of the proposed workbench. In recent years, materials scientists have been struggling with the challenge of dealing with the ever-increasing amount of complex materials science data that are available from online sources and generated by the high-throughput laboratory instruments and data-intensive software tools, respectively. Meanwhile, the funding organizations have encouraged, and even mandated, the sponsored researchers across many domains to make the scientifically-valuable data, together with the traditional scholarly publications, available to the public. This open access requirement provides the opportunity for materials scientists who are able to exploit the available data to expedite the discovery of novel compound materials. However, it also poses challenges for them. The materials scientists raise concerns about the difficulties of precisely locating and processing diverse, but related, data from different data sources and of effectively managing laboratory information and data. In addition, they also lack the simple tools for data access and publication, and require measures for Intellectual Property protection and standards for data sharing, exchange and reuse. The following paragraphs describe how the major workbench components resolve these challenges. First, the materials science ontology, represented in the Web Ontology Language (OWL), enables, (1) the mapping between and the integration of the disparate materials science databases, (2) the modelling of experimental provenance information acquired in the physical and digital domains and, (3) the inferencing and extraction of new knowledge within the materials science domain. Next, the federated search interface based on the materials science ontology enables the materials scientists to search, retrieve, correlate and integrate diverse, but related, materials science data and information across disparate databases. Then, a workflow management system underpinning the WSBPEL engine is not only able to manage the scientific investigation process that incorporates multidisciplinary scientists distributed over a wide geographic region and self-contained computational services, but also systematically acquire the experimental data and information generated by the process. Finally, the provenance-aware scientific compound-object publishing system provides the scientists with a view of the highly complex scientific workflow at multiple-grained levels. Thus, they can easily comprehend the science of the workflow, access experimental information and keep the confidential information from unauthorised viewers. It also enables the scientists to quickly and easily author and publish a scientific compound object that, (1) incorporates not only the internal experimental data with the provenance information from the rendered view of a scientific experimental workflow, but also external digital objects with the metadata, for example, published scholarly papers discoverable via the World Wide Web (the Web), (2) is self- contained and explanatory with IP protection and, (3) is guaranteed to be disseminated widely on the Web. The prototype systems of the major workbench components have been developed. The quality of the material science ontology has been assessed, based on Gruber’s principles for the design of ontologies used for knowledge–sharing, while its applicability has been evaluated through two of the workbench components, the ontology-based federated search interface and the provenance-aware scientific compound object publishing system. Those prototype systems have been deployed within a team of fuel cell scientists working within the Australian Institute for Bioengineering and Nanotechnology (AIBN) at the University of Queensland. Following the user evaluation, the overall feedback to date has been very positive. First, the scientists were impressed with the convenience of the ontology-based federated search interface because of the easy and quick access to the integrated databases and analytical tools. Next, they felt the surge of the relief that the complex compound synthesis process could be managed by and monitored through the WSBPEL workflow management system. They were also excited because the system is able to systematically acquire huge amounts of complex experimental data produced by self-contained computational services that is no longer handled manually with paper-based laboratory notebooks. Finally, the scientific compound object publishing system inspired them to publish their data voluntarily, because it provides them with a scientific-friendly and intuitive interface that enables scientists to, (1) intuitively access experimental data and information, (2) author self-contained and explanatory scientific compound objects that incorporate experimental data and information about research outcomes, and published scholarly papers and peer-reviewed datasets to strengthen those outcomes, (3) enforce proper measures for IP protection, (4) comply those objects with the Open Archives Initiative Protocol – Object Exchange and Reuse (OAI-ORE) to maximize its dissemination over the Web and,(5) ingest those objects into a Fedora-based digital library.

This project presents a Materials Informatics Workbench that resolves the challenges confronting materials scientists in the aspects of materials science data assimilation and dissemination. It adopts an approach that has ingeniously combined and extended the technologies of the Semantic Web, Web Service Business Process Execution Language (WSBPEL) and Open Archive Initiative Object Reuse and Exchange (OAI-ORE). These technologies enable the development of novel user interfaces and innovative algorithms and techniques behind the major components of the proposed workbench. In recent years, materials scientists have been struggling with the challenge of dealing with the ever-increasing amount of complex materials science data that are available from online sources and generated by the high-throughput laboratory instruments and data-intensive software tools, respectively. Meanwhile, the funding organizations have encouraged, and even mandated, the sponsored researchers across many domains to make the scientifically-valuable data, together with the traditional scholarly publications, available to the public. This open access requirement provides the opportunity for materials scientists who are able to exploit the available data to expedite the discovery of novel compound materials. However, it also poses challenges for them. The materials scientists raise concerns about the difficulties of precisely locating and processing diverse, but related, data from different data sources and of effectively managing laboratory information and data. In addition, they also lack the simple tools for data access and publication, and require measures for Intellectual Property protection and standards for data sharing, exchange and reuse. The following paragraphs describe how the major workbench components resolve these challenges. First, the materials science ontology, represented in the Web Ontology Language (OWL), enables, (1) the mapping between and the integration of the disparate materials science databases, (2) the modelling of experimental provenance information acquired in the physical and digital domains and, (3) the inferencing and extraction of new knowledge within the materials science domain. Next, the federated search interface based on the materials science ontology enables the materials scientists to search, retrieve, correlate and integrate diverse, but related, materials science data and information across disparate databases. Then, a workflow management system underpinning the WSBPEL engine is not only able to manage the scientific investigation process that incorporates multidisciplinary scientists distributed over a wide geographic region and self-contained computational services, but also systematically acquire the experimental data and information generated by the process. Finally, the provenance-aware scientific compound-object publishing system provides the scientists with a view of the highly complex scientific workflow at multiple-grained levels. Thus, they can easily comprehend the science of the workflow, access experimental information and keep the confidential information from unauthorised viewers. It also enables the scientists to quickly and easily author and publish a scientific compound object that, (1) incorporates not only the internal experimental data with the provenance information from the rendered view of a scientific experimental workflow, but also external digital objects with the metadata, for example, published scholarly papers discoverable via the World Wide Web (the Web), (2) is self- contained and explanatory with IP protection and, (3) is guaranteed to be disseminated widely on the Web. The prototype systems of the major workbench components have been developed. The quality of the material science ontology has been assessed, based on Gruber’s principles for the design of ontologies used for knowledge–sharing, while its applicability has been evaluated through two of the workbench components, the ontology-based federated search interface and the provenance-aware scientific compound object publishing system. Those prototype systems have been deployed within a team of fuel cell scientists working within the Australian Institute for Bioengineering and Nanotechnology (AIBN) at the University of Queensland. Following the user evaluation, the overall feedback to date has been very positive. First, the scientists were impressed with the convenience of the ontology-based federated search interface because of the easy and quick access to the integrated databases and analytical tools. Next, they felt the surge of the relief that the complex compound synthesis process could be managed by and monitored through the WSBPEL workflow management system. They were also excited because the system is able to systematically acquire huge amounts of complex experimental data produced by self-contained computational services that is no longer handled manually with paper-based laboratory notebooks. Finally, the scientific compound object publishing system inspired them to publish their data voluntarily, because it provides them with a scientific-friendly and intuitive interface that enables scientists to, (1) intuitively access experimental data and information, (2) author self-contained and explanatory scientific compound objects that incorporate experimental data and information about research outcomes, and published scholarly papers and peer-reviewed datasets to strengthen those outcomes, (3) enforce proper measures for IP protection, (4) comply those objects with the Open Archives Initiative Protocol – Object Exchange and Reuse (OAI-ORE) to maximize its dissemination over the Web and,(5) ingest those objects into a Fedora-based digital library.