Caseous lymphadenitis (CLA) is a disease primarily in sheep and goats, caused by Corynebacterium pseudotuberculosis, characterized by abscess formation in external and/or internal lymph nodes and organs. Economic losses occur due to emaciation, reduced milk production and impaired growth in affected animals. At the Swedish Veterinary Agency, bacterial culture is used as a diagnostic method for detecting CLA, requiring puncture of clinical abscesses. This sampling method increases the risk for disease transmission and overlooks animals affected by internal abscesses. In this study, a commercially available enzyme-linked immunosorbent assay (ELISA)-kit, based on an indirect ELISA, was validated for detecting antibodies for CLA, aiming for a more cost-effective and safer method that also can detect animals with internal abscesses. Serum and milk samples were analyzed to investigate the concordance between the two sample types. A subset of serum and milk samples was sent to Norway for analysis to compare the ELISA results, and comparison with another laboratory's results was conducted. The ELISA-kit demonstrated high sensitivity (92% for serum, 100% for milk), crucial for controlling CLA at herd level, while the specificity was estimated at 68% for serum and 61% for milk. To avoid increased and unnecessary culling of animals, a confirmatory method should analyze positive individuals to increase the specificity. Pooled milk samples could reduce costs for herd-level analysis, followed by serum sampling for positive herds.

<p>The pathogenic bacteria Yersinia pestis and Y. pseudotuberculosis are related to the degree where the former is considered a subspecies of the latter, and still they cause disease of little resemblance in humans. Y. pestis is the causative agent of lethal bubonic and pneumonic plague, while Y. pseudotuberculosis manifests itself as mild gastroenteritis. An important virulence determinant for these species is their ability to secrete and inject toxins (Yop effectors) into immune cells of the infected host, in a bacterium-cell contact dependent manner. This ability depends on the extensively studied type III secretion system, a highly complex multicomponent structure resembling a needle. The induction of Yop secretion is a strictly controlled event. The two structural type III secretion components YscU and YscP are here shown to play a crucial role in this process, which is suggested to require an YscP mediated conformational change of the C-terminus of YscU. Proteolytic cleavage of YscU within this domain is further revealed to be a prerequisite for functional Yop secretion. The needle subcomponent itself, YscF, is recognised as a regulatory element that controls the induction of Yop effectors and their polarised delivery into target cells. Potentially, the needle might act as a sensor that transmits the inducing signal (i.e. target cell contact) to activate the type III secretion system. Secondly a, for Yersinia, previously unexplored system, the Twin arginine translocation (Tat) pathway, is shown to be functional and absolutely required for virulence of Y. pseudotuberculosis. A range of putative Yersinia Tat substrates were predicted in silico, which together with the Tat system itself may be interesting targets for future development of antimicrobial treatments.</p>

<p>Over the past decade, the development of macromolecular drugs based on peptides, proteins and nucleic acids has increased the interest in microparticulate drug delivery, i.e., the delivery of drug systems in the nanometer and micrometer ranges. However, little is known so far about the effect that microparticulate systems have on various tissues after administration. Additionally, the knowledge of mechanisms responsible for the uptake and transport of microparticles across the human intestine is incomplete and requires further investigation to improve both the safety profiles and the efficiency of these drug delivery systems.</p><p>This thesis is comprised of two parts. The first one investigates gene expression responses obtained from DNA arrays in local and distal tissues after microparticulate drug delivery. The second part focuses on the mechanisms responsible for the transport of microparticles across epithelial cells lining the intestine.</p><p>The results presented in the first part demonstrated that gene expression analysis offers a detailed picture of the tissue responses after intramuscular or pulmonary administration of microparticulate drug delivery systems compared to the traditional techniques used for such evaluations. In addition, DNA arrays provided a useful and sensitive tool for the initial characterization and evaluation of both local and distal tissue responses, making it possible to distinguish between gene expression patterns related to each studied delivery system.</p><p>The results presented in the second part demonstrated that the surface properties of the microparticle were important for the extent of transport across an <i>in vitro</i> model of the follicle-associated epithelium (FAE), comprised of intestinal epithelial cells specialized in particle transport (M cells). Another important finding was that the enteropathogen bacterium, <i>Yersinia pseudotuberculosis</i>, induced microparticle transport across the normal intestinal epithelium, represented by Caco-2 cells and excised human ileal tissue. This transport was most probably mediated by an increased capacity for macropinocytosis in the epithelial cells.</p>

The pathogenic bacteria Yersinia pestis and Y. pseudotuberculosis are related to the degree where the former is considered a subspecies of the latter, and still they cause disease of little resemblance in humans. Y. pestis is the causative agent of lethal bubonic and pneumonic plague, while Y. pseudotuberculosis manifests itself as mild gastroenteritis. An important virulence determinant for these species is their ability to secrete and inject toxins (Yop effectors) into immune cells of the infected host, in a bacterium-cell contact dependent manner. This ability depends on the extensively studied type III secretion system, a highly complex multicomponent structure resembling a needle. The induction of Yop secretion is a strictly controlled event. The two structural type III secretion components YscU and YscP are here shown to play a crucial role in this process, which is suggested to require an YscP mediated conformational change of the C-terminus of YscU. Proteolytic cleavage of YscU within this domain is further revealed to be a prerequisite for functional Yop secretion. The needle subcomponent itself, YscF, is recognised as a regulatory element that controls the induction of Yop effectors and their polarised delivery into target cells. Potentially, the needle might act as a sensor that transmits the inducing signal (i.e. target cell contact) to activate the type III secretion system. Secondly a, for Yersinia, previously unexplored system, the Twin arginine translocation (Tat) pathway, is shown to be functional and absolutely required for virulence of Y. pseudotuberculosis. A range of putative Yersinia Tat substrates were predicted in silico, which together with the Tat system itself may be interesting targets for future development of antimicrobial treatments.

Over the past decade, the development of macromolecular drugs based on peptides, proteins and nucleic acids has increased the interest in microparticulate drug delivery, i.e., the delivery of drug systems in the nanometer and micrometer ranges. However, little is known so far about the effect that microparticulate systems have on various tissues after administration. Additionally, the knowledge of mechanisms responsible for the uptake and transport of microparticles across the human intestine is incomplete and requires further investigation to improve both the safety profiles and the efficiency of these drug delivery systems. This thesis is comprised of two parts. The first one investigates gene expression responses obtained from DNA arrays in local and distal tissues after microparticulate drug delivery. The second part focuses on the mechanisms responsible for the transport of microparticles across epithelial cells lining the intestine. The results presented in the first part demonstrated that gene expression analysis offers a detailed picture of the tissue responses after intramuscular or pulmonary administration of microparticulate drug delivery systems compared to the traditional techniques used for such evaluations. In addition, DNA arrays provided a useful and sensitive tool for the initial characterization and evaluation of both local and distal tissue responses, making it possible to distinguish between gene expression patterns related to each studied delivery system. The results presented in the second part demonstrated that the surface properties of the microparticle were important for the extent of transport across an in vitro model of the follicle-associated epithelium (FAE), comprised of intestinal epithelial cells specialized in particle transport (M cells). Another important finding was that the enteropathogen bacterium, Yersinia pseudotuberculosis, induced microparticle transport across the normal intestinal epithelium, represented by Caco-2 cells and excised human ileal tissue. This transport was most probably mediated by an increased capacity for macropinocytosis in the epithelial cells.

Yersinia pestis, the gram-negative causative agent of plague, is a master of immune evasion. The bacterium possesses a type three secretion system which translocates Yop effector proteins into host immune cells to inhibit a number of immune and cell signaling cascades. Interestingly, this apparatus is not expressed at low temperatures such as those found within the flea vector and is therefore neither in place nor functional when the bacteria are first transmitted into a mammalian host. However, the bacterium is still able to avoid activating the immune system, even very early during infection. When grown at 37°C (human body temperature) Y. pestis produces a tetra-acyl lipid A molecule, which is antagonistic to the human Toll like receptor 4/MD2, the major lipopolysaccharide recognition receptor. Although tetra-acyl lipid A binds this receptor complex, it does not induce signaling, and in fact inhibits the receptors interaction with other stimulatory forms of lipid A. The work undertaken in this thesis seeks to determine if the production of tetra-acyl lipid A by Y. pestis is a key virulence determinant and was a critical factor in the evolution of Y. pestis from its ancestral parent Yersinia pseudotuberculosis. By examining the enzymes involved in the lipid A biosynthesis pathway, it has been determined that Y. pestis lacks LpxL, a key enzyme that adds a secondary acyl chain on to the tetra acyl lipid A molecule. In the absence of this enzyme, Y. pestis cannot produce a TLR4 stimulating form of lipid A, whereas Y. pseudotuberculosis does contain the gene for LpxL and produces a stimulatory hexa acyl lipid A. To determine if the absence of LpxL in Y. pestis is important for virulence, LpxL from E. coli and Y. pseudotuberculosis were introduced into Y. pestis. In both cases the addition of LpxL led to bacterium which produced a hexa-acylated lipid A molecule and TLR4/MD2 stimulatory LPS. To verify the LpxL phenotype, lpxL was deleted from Y. pseudotuberculosis, resulting in bacteria which produce tetra-acylated lipid A and nonstimulatory LPS. Mice challenged with LpxL expressing Y. pestis were found to be completely resistant to infection. This profound attenuation in virulence is TLR4 dependent, as mice deficient for this receptor rapidly succumb to disease. These altered strains of the bacterium also act as vaccines, as mice infected with Y. pestis expressing LpxL then challenged with wild type Y. pestis do not become ill. These data demonstrate that the production of tetra-acyl lipid A is a critical virulence determinant for Y. pestis, and that the loss of LpxL formed a major step in the evolution of Y. pestis from Y. pseudotuberculosis. These bacterial strains were also used as tools to determine the contributions of different innate immune receptors and adaptor molecules to the host response during Y. pestis infection. The use of LpxL expressing Y. pestis allowed identification of the innate immune pathways critical for protection during Y. pestis infection. This model also established that CD14 recognition of rough LPS is critical for protection from Y. pestisexpressing LpxL, and activation of the IL-1 receptor and the induction of IL-1β plays a major role in this infection as well. The lipid A acylation profile of gram negative bacteria can have a direct and profound effect on the pathogenesis of the organism. This work illustrates a previously unknown and critical aspect of Y. pestis pathogenesis, which can be extended to other gram-negative pathogens. The greater detail of the contributions which different host adaptor and receptor molecules make to the overall innate immune signaling pathway will allow a better insight into how gram negative infections progress and how they are counteracted by the immune system. Alterations of the lipid A profile of Y. pestis have important implications for the production of vaccines to Y. pestis and other gram negative pathogens. Taken together, this work describes a novel mechanism for immune evasion by gram negative bacteria with consequences for understanding the immune response and the creation of more effective vaccines, both of which will decrease the danger posed by this virulent pathogen.

Outbreaks of food-born illness associated with the consumption of unpasteurized juice and apple cider have resulted in a rule published by the U.S. Food and Drug Administration (FDA) in order to improve the safety of juice products. The rule (21 CFR120) requires manufacturers of juice products to develop a Hazard Analysis and Critical Control Point (HACCP) plan and to achieve a 5-log reduction in the number of the most resistant pathogens. Ultraviolet (UV) disinfection is one of the promising methods to reach this 5-log reduction of pathogens. The absorption coefficients of juices typically vary from 10 to 40 1/cm and can be even higher depending on brand and processing conditions. Thin film reactors consisting of two concentric cylinders are suitable for inactivating pathogens in juices. When the two concentric cylinders are fixed, the flow pattern in the gap can be laminar Poiseuille flow or turbulent flow depending on flow rates. If the inner cylinder is rotating, and the rotating speed of the inner cylinder exceeds a certain value, the flow pattern can be either laminar or turbulent Taylor-Couette flow. UV disinfection between concentric cylinders in laminar Poiseuille flow, turbulent flow and both laminar and turbulent Taylor-Couette flow was investigated experimentally and numerically. This is the first systematic study done on UV disinfection between concentric cylinders in all three flow patterns. The present work provides new experimental data for pathogen inactivation in each of the three flow patterns. In addition, the present study constitutes the first systematic numerical CFD predictions of expected inactivation levels. Proper operating parameters and optimum gap widths for different flow patterns are suggested. It is concluded that laminar Poiseuille flow provides inferior (small) inactivation levels while laminar Taylor-Couette flow provides superior (large) inactivation levels. The relative inactivation levels are: laminar Poiseuille flow < turbulent flow < laminar Taylor-Couette flow.

Made available in DSpace on 2014-06-11T19:25:37Z (GMT). No. of bitstreams: 0 Previous issue date: 2009-05-22Bitstream added on 2014-06-13T19:12:39Z : No. of bitstreams: 1 ribeiro_d_me_araca.pdf: 985135 bytes, checksum: 3aa44a75a9180f7b89be1f30675f165b (MD5) / A Linfadenite Caseosa (LC) é uma doença crônica contagiosa, causada pela Corynebacterium pseudotuberculosis que acomete ovinos e caprinos acarretando perdas econômicas importantes. O diagnóstico é baseado no cultivo e identificação bioquímica, no entanto a fase subclínica e/ou visceral requerem métodos alternativos para sua detecção. Apesar dos métodos de diagnóstico já existentes, raramente pesquisas investigaram a utilização de material proveniente de punção aspirativa por agulha fina (PAAF) de linfonodo de ovinos aplicadas a outras técnicas de diagnóstico. O presente trabalho objetivou avaliar a sensibilidade e especificidade de métodos de diagnóstico para LC em ovinos sintomáticos (n=26) e assintomáticos (n=129), utilizando material colhido através de PAAF de linfonodo. As técnicas basearam-se na amplificação por PCR do gene alvo pld (fosfolipase D), no cultivo bacteriano associado a identificação bioquímica, no citodiagnóstico, bem como na pesquisa do agente etiológico. O teste sorológico por ELISA indireto foi adaptado para a espécie ovina. As amostras clínicas recuperadas da PAAF forneceram material adequado e suficiente para realização dos testes propostos, implementando a rotina do diagnóstico para LC. Dentre os métodos testados, o ELISA e a PCR foram os que apresentaram maior sensibilidade (92%). A maior especificidade foi verificada no cultivo bacteriano (98%), seguido do exame citológico (94%). / Caseous Lymphadenitis (CL) is considered a cronic contagious disease caused by Corynebacterium pseudotuberculosis affecting sheep and goats causing economical losses. The diagnostic is based on microorganism culture and respective identification. However no clinical and/ or visceral cases need alternative methods for detection. In spite of a range of diagnostic methods, few studies demonstrate the usefulness of fine-needle aspiration biopsy (FNAB) method. The aim of this study was to evaluate the sensitivity and specificity of diagnostic methods for CL in symptomatic (n=26) and asymptomatic (n=129) sheeps, using specimes collected from lymph nodes by FNAB assay. These techniques were performed using PCR targeting the pld gene (phospholipase D), on biochemical identification and culture, cytodiagnostic searching the aetiological agent. The serologic test of ELISA method was also applied in all ovine sera. Clinical samples recovered in FNAB given suitable and enough samples to perform the identification of C. pseudotuberculosis, implementing CL diagnostics. Among all techniques used here, ELISA and PCR demonstrated higher sensitivity (92%), whereas microorganism culture (98%) and cytodiagnostic (94%) presented higher specificity.

Resumo: A Linfadenite Caseosa (LC) é uma doença crônica contagiosa, causada pela Corynebacterium pseudotuberculosis que acomete ovinos e caprinos acarretando perdas econômicas importantes. O diagnóstico é baseado no cultivo e identificação bioquímica, no entanto a fase subclínica e/ou visceral requerem métodos alternativos para sua detecção. Apesar dos métodos de diagnóstico já existentes, raramente pesquisas investigaram a utilização de material proveniente de punção aspirativa por agulha fina (PAAF) de linfonodo de ovinos aplicadas a outras técnicas de diagnóstico. O presente trabalho objetivou avaliar a sensibilidade e especificidade de métodos de diagnóstico para LC em ovinos sintomáticos (n=26) e assintomáticos (n=129), utilizando material colhido através de PAAF de linfonodo. As técnicas basearam-se na amplificação por PCR do gene alvo pld (fosfolipase D), no cultivo bacteriano associado a identificação bioquímica, no citodiagnóstico, bem como na pesquisa do agente etiológico. O teste sorológico por ELISA indireto foi adaptado para a espécie ovina. As amostras clínicas recuperadas da PAAF forneceram material adequado e suficiente para realização dos testes propostos, implementando a rotina do diagnóstico para LC. Dentre os métodos testados, o ELISA e a PCR foram os que apresentaram maior sensibilidade (92%). A maior especificidade foi verificada no cultivo bacteriano (98%), seguido do exame citológico (94%). / Abstract: Caseous Lymphadenitis (CL) is considered a cronic contagious disease caused by Corynebacterium pseudotuberculosis affecting sheep and goats causing economical losses. The diagnostic is based on microorganism culture and respective identification. However no clinical and/ or visceral cases need alternative methods for detection. In spite of a range of diagnostic methods, few studies demonstrate the usefulness of fine-needle aspiration biopsy (FNAB) method. The aim of this study was to evaluate the sensitivity and specificity of diagnostic methods for CL in symptomatic (n=26) and asymptomatic (n=129) sheeps, using specimes collected from lymph nodes by FNAB assay. These techniques were performed using PCR targeting the pld gene (phospholipase D), on biochemical identification and culture, cytodiagnostic searching the aetiological agent. The serologic test of ELISA method was also applied in all ovine sera. Clinical samples recovered in FNAB given suitable and enough samples to perform the identification of C. pseudotuberculosis, implementing CL diagnostics. Among all techniques used here, ELISA and PCR demonstrated higher sensitivity (92%), whereas microorganism culture (98%) and cytodiagnostic (94%) presented higher specificity. / Orientador: Maria Cecília Rui Luvizotto / Coorientador: Vasco Ariston de Carvalho Azevedo / Banca: Márcio Garcia Ribeiro / Banca: Tereza Cristina Cardoso da Silva / Mestre

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