The aim of this thesis was using surface-enhanced Raman scattering (SERS) microspectroscopy for the study of biomolecules and biological systems. The main probe molecule was cationic porphyrin H2TMPyP, however, other porphyrins, tryptophan and two lipids were also used. The sensitivity and reproducibility of several solid SERS substrates: (i) Au and Ag nanoparticles (NPs) immobilized via a bifunctional linker, (ii) AgNPs immobilized by drying, (iii) highly ordered Au and Ag film-over-nanosphere (FON) and (iv) Ag-coated insect wings were compared. On most of the solid substrates, the lowest detected H2TMPyP concentration was ~10-8 M. The highest sensitivity was provided by the dried drops of AgNPs/analyte mixture, where concentrations 1×10-10 M TMPyP, 1×10-5 M tryptophan, 2×10-7 M DSPC and 3×10-7 M DMTAP were detected. Nevertheless, the spectral reproducibility was decreased due to porphyrin metallation and perturbation of the lipid spectra in comparison to their Raman spectra from solution. The highest reproducibility was achieved by AuFON and Ag-coated insect wings. Finally, the AgNPs modified by PEG polymers were tested for intracellular application using HeLa cancer cells. Metallation of H2TMPyP served to probe the accessibility of PEG- AgNPs surface. The results proved that the accessibility...

Raman microspectroscopy enables one to acquire spectra of Raman scattering with a spatial resolution in the order of a few μm3 and thus to study the natural composition of biological objects such as tissues, single cells and cellular organelles in a non-invasive way. In this work, we used Raman microspectroscopy to investigate vacuoles of the opportunistic human yeast pathogen Candida albicans. Large sets of Raman spectra of vacuoles were collected based on different cultivation protocols. The sets of the spectra were evaluated using the multivariate statistical method of singular value decomposition. Based on the spectral analysis, we characterized the chemical composition of the vacuoles. We found out that the vacuoles of cells cultured differently or in different media vary particularly in the concentration of polyphosphate, represented in the spectra by the peak near 1155 cm-1 . Interestingly, the wavenumber position of the polyphosphate peak may also be shifted by several cm-1 . We studied these shifts in vitro with sodium hexametaphosphate as a model of vacuolar polyphosphate. Based on these experiments, we suggest that the peak position is significantly influenced by the concentration of divalent cations.

No description available.

This study focuses on the analysis of atmospheric particles sampled from two different field campaigns: the field study at a cattle feeding facility in the summer from 2005 to 2008 and the Indirect and Semi-Direct Aerosol Campaign (ISDAC) in 2008. A ground site field study at a representative large cattle feeding facility in the Texas Panhandle was conducted to characterize the particle size distributions, hygroscopicity, and chemical composition of agricultural aerosols. Here, a first comprehensive dataset is reported for these physical and chemical properties of agricultural aerosols appropriate for use in a site-specific emission inventory. The emission rate and transport of the aerosols are also discussed. In addition, mixing ratios of total and gaseous ammonia were measured at the same field in 2007 and 2008. Measurements such as these provide a means to determine whether the fugitive dust emitted from a typical large feedlot represents a health concern for employees of the feeding operation and the nearby community. Detailed chemical composition of aircraft-sampled particles collected during ISDAC was studied. Filter samples were collected under a variety of conditions in and out of mixed phase and ice clouds in the Arctic. Specifically, particles were sampled from a mixed-phase cloud during a period of observed high concentrations of ice nuclei (IN), a biomass plume, and under relatively clean ambient conditions. Composition of particles was studied on a particle-by-particle basis using several microspectroscopy techniques. Based on the elemental composition analysis, more magnesium was found in Arctic cloud residues relative to ambient air. Likewise, based on the carbon speciation analysis, high IN samples contained coated inorganics, carbonate, and black or brown carbon particles. In the samples collected during a flight through a biomass burning plume, water-soluble organic carbon was the dominant overall composition. Due to their hygroscopic nature, these organics may preferably act as cloud condensation nuclei (CCN) rather than IN. Other ambient samples contained relatively higher fractions of organic and inorganic mixtures and less purely water-soluble organics than found in the biomass particles. The most likely source of inorganics would be sea salt. When present, sea salt may further enhance ice nucleation.

Les biofilms sont des communautés complexes de microorganismes, enchassées dans une matrice auto-secrétée de substances polymériques extracellulaires ou EPS. Les biofilms se forment à la surface de la plupart des matériaux, qu’ils soient de nature biologique ou non, et sont à l’origine de divers problèmes économiques et sanitaires. Les bactéries dans un biofilm, dites bactéries sessiles, présentent en effet des propriétés phénotypiques qui les distinguent de leurs homologues planctoniques, notamment par une résistance accrue aux antibiotiques et aux traitements de désinfection. D’où, la nécessité de prévenir leur formation et/ ou de leur élimination à partir de stratégies mieux adaptées à ce mode de vie en communauté. Le développement de telles stratégies passe entre autre par une meilleure connaissance des contributions physico-chimiques gouvernant les interactions de ces microorganismes avec leur environnement proche notamment lors des étapes initiales de la formation des biofilms. Deux grands objectifs ont été fixés au début de cette thèse, le premier visant à caractériser, in situ et en temps réel la formation de jeunes biofilms de deux modèles bactériens : une souche naturelle et ubiquitaire de Pseudomonas fluorescens et une souche modèle d’Escherichia coli obtenue par génie génétique pour surexprimer un seul type d’EPS. Le deuxième objectif de cette thèse, consiste à étudier leurs réponses à un stress environnemental ou chimique, notamment quand les biofilms doivent se développer dans des conditions extrêmes de pH. Pour atteindre ces objectifs, différentes techniques ont été combinées pour étudier de l’échelle moléculaire à l’échelle cellulaire le développement des biofilms. La spectroscopie Infrarouge à Transformée de Fourier en mode réflexion totale atténuée (FTIR-ATR) a été utilisée pour suivre en temps réel le développement des biofilms. Nous avons pu suivre l’évolution des empreintes spectrales IR-ATR au cours de la formation des biofilms, sous des conditions favorables ou non à leur croissance. De jeunes biofilms de 24 h ont été étudiés par microspectroscopie Raman confocale (MRC), celle ci permettant d’obtenir des informations localisées sur la composition chimique des biofilms. La structure générale des biofilms a été visualisée par la microscopie à épifluorescence. Finalement, les propriétés physico-chimiques des EPS ont été quantifiées par spectroscopie de force atomique à l’échelle de la molécule unique (SMFS pour Single Molecule Force Spectroscopy). / Biofilms are complex communities of microorganisms, embedded in an auto-produced matrix of extracellular polymeric substances or EPS. Biofilms form on the surface of most materials, whether or not they are of biological nature, and cause major economic problems as well as public health concerns. Bacteria within a biofilm also called sessile bacteria, have phenotypic characteristics that distinguish them from their planktonic counterparts, rendering them more resistant to antibiotics and to disinfection strategies. Hence, the prevention of their formation and/ or their elimination requires the use of strategies that are well suited to the sessile mode of life. The development of these strategies begins with a better understanding of the physicochemical contributions that govern the interaction between the sessile community and its environment especially during the first steps of biofilm formation. Two main objectives were defined at the beginning of this thesis, the first was to characterize, in situ, and in real time the development of nascent biofilms. Two bacterial models were studied: a natural and ubiquitous strain of Pseudomonas fluorescens and a model strain of Escherichia coli genetically modified to overexpress one type of EPS. The second objectif was to study their responses towards an environmental or chemical stress; particularly how their development would be affected under extreme conditions of pH. To gain these objectives, different techniques were combined to study from the molecular to the cellular scale the development of biofilms. Fourier Transform Infrared spectroscopy in attenuated total reflection mode was used to evaluate in real time the development of biofilms. We were able to detect changes in the IR-ATR spectral profile along biofilm formation under favorable and non favorable growth conditions. 24 h - old biofilms were characterized using confocal Raman microspectroscopy, which allowed us to gather localized information on their chemical composition. The structure of biofilms was visualized using epifluorescence microscocopy. Finally, physico-chemical properties of EPS were quantified using single molecule force spectroscopy

Submitted by Morgana Andrade (morgana.andrade@ufes.br) on 2016-04-20T18:08:45Z No. of bitstreams: 2 license_rdf: 23148 bytes, checksum: 9da0b6dfac957114c6a7714714b86306 (MD5) Dissertação - Jandira Brandao.PDF: 3676451 bytes, checksum: f81e6261408c6c253ba5df2e649db174 (MD5) / Approved for entry into archive by Patricia Barros (patricia.barros@ufes.br) on 2016-05-11T16:15:08Z (GMT) No. of bitstreams: 2 license_rdf: 23148 bytes, checksum: 9da0b6dfac957114c6a7714714b86306 (MD5) Dissertação - Jandira Brandao.PDF: 3676451 bytes, checksum: f81e6261408c6c253ba5df2e649db174 (MD5) / Made available in DSpace on 2016-05-11T16:15:08Z (GMT). No. of bitstreams: 2 license_rdf: 23148 bytes, checksum: 9da0b6dfac957114c6a7714714b86306 (MD5) Dissertação - Jandira Brandao.PDF: 3676451 bytes, checksum: f81e6261408c6c253ba5df2e649db174 (MD5) / CAPES, FAPES / Considerando o forte impacto social e financeiro causado pelas fraudes em documentos, principalmente o papel-moeda, e a diversidade de métodos empregados nas falsificações, sua crescente disseminação e sofisticação, é preciso desenvolver novas metodologias para análise de documentos que sejam sensíveis e não destrutivas, pois o material examinado precisa ser preservado na íntegra para continuidade dos processos judiciais. Assim, o objetivo deste trabalho foi desenvolver uma metodologia utilizando as técnicas de Microespectroscopia Raman e Microscopia de Força Atômica, que possibilite distinguir os documentos autênticos dos fraudados e determinar os meios empregados nas falsificações, de maneira confiável, com baixo tempo de análise e sem danos às amostras. Neste estudo foram utilizadas cédulas de R$100,00 e CNH’s autênticas e fraudadas, cédulas autênticas de dólar de diferentes valores (US $ 10,00 e US $ 20,00), e cédulas autênticas de € 5,00 de diferentes fabricantes; para cada tipo de amostra (autêntica e fraudada) foram utilizados três exemplares distintos. Todas as análises foram realizadas in situ, sem qualquer preparação das superfícies, utilizando microscópio confocal Alpha 300R WITEC do NCQP/UFES acoplado com microespectroscópio Raman e microscópio de força atômica, sendo selecionadas as mesmas regiões tanto nos documentos autênticos quanto nos fraudados. O trabalho foi dividido em duas partes. A primeira parte abordou a análise das amostras utilizando AFM, através da avaliação dos parâmetros de topografia, fase e rugosidade dos diferentes papéis utilizados na fabricação desses documentos. Os resultados obtidos por AFM permitiram diferenciar os documentos autênticos (com superfícies mais uniformes e regiões topográficas características para os elementos de segurança) dos fraudados (com superfícies mais irregulares e perfil topográfico semelhante em todas as regiões), discriminar o tipo de papel utilizado nas fraudes (propriedades físico-químicas semelhantes às do papel tipo Office), e ainda, distinguir entre cédulas autênticas produzidas por diferentes fabricantes (diferença nos valores de SSK e SKU). Na segunda parte foi abordada a análise das amostras utilizando RM, através da identificação dos pigmentos utilizados na confecção dos diversos documentos. Os resultados obtidos por RM permitiram distinguir os documentos autênticos (com predominância de bandas características para o carbon black, ftalocianina de cobre, diarileto e dióxido de titânio), dos fraudados (com predominância de fluorescência e bandas características do carbonato de cálcio utilizado no tratamento do papel comercial), além de identificar o tipo de impressão utilizada nas falsificações. A combinação das duas técnicas mostrou ser promissora para a análise forense de documentos, pois fornece resultados precisos e reprodutíveis, em pouco tempo e, principalmente, sem prejuízo ao material analisado. / Considering the strong social and financial impact caused by document forgery, especially banknote, and the diversity of methods used in the forgeries, their increasing spread and sophistication, it is necessary to develop new methods for document analysis that are sensitive and non-destructive, because the material examined must be preserved in its entirety for continuity of legal proceedings. The objective of this study was to develop a methodology using the techniques of Microspectroscopy Raman and Atomic Force Microscopy, which allows to distinguish the authentic documents of counterfeit, and to determine the means employed in the forgery, that is reliable, with low analysis time and undamaged the samples. This study used authentic and counterfeit banknotes of R$ 100.00 and CNH, authentic dollar banknotes of different values ($ 10.00 and $ 20.00), and authentic banknotes of € 5.00 from different manufacturers; for each sample type (authentic and counterfeit) were used three different copies. All analyzes were performed in situ without any surface preparation, using confocal microscope Alpha 300R WITEC of NCQP / UFES coupled with Raman microspectroscope and atomic force microscope, being selected the same regions in both the authentic and counterfeit documents. The study divided into two parts. The first part dealt with the analysis of samples using AFM, by assessing the topography parameters, phase and roughness of the different papers used in manufacturing these documents. The results obtained by AFM could differentiate the authentic documents (with smoother surfaces and topographical regions characteristics for the security features) of counterfeit (over uneven surfaces and similar topographic profile in all regions), discriminate the type of paper used for forgery (physicochemical properties similar to Office type paper), and also distinguish between authentic banknotes produced by different manufacturers (difference between SSK and SKU values). In the second part, we addressed the analysis of samples using RM, through the identification of pigments used in the preparation of various documents. The results obtained by RM possible to distinguish authentic documents (with a predominance of characteristic peaks for the carbon black, copper phthalocyanine, diarylide and titanium dioxide), of counterfeit (predominantly fluorescence and calcium carbonate bands characteristic of the commercial paper treatment), and identify the type of printing used in the forgeries. The combination of the two techniques has shown promise for the forensic analysis of documents because it provides accurate and reproducible results in a short time and, above all, without prejudice to the analyzed material.

Ce travail de recherche rapporte l'utilisation de techniques biophotoniques pour investiguer des questions biomédicales, de la recherche fondamentale (interaction champs électriques impulsionnels / cellules) aux études cliniques (toxicité cutanée induite chez les patients traités par des thérapies ciblées).La microspectroscopie confocale Raman et de la microscopie terahertz ont été utilisées pour étudier le processus d’électroperméabilisation cellulaire d'un point de vue moléculaire. Nos résultats démontrent l'implication des protéines. De plus, nous avons montré que la signature Raman des cellules peut être utilisée comme un biomarqueur précis des différents états des cellules exposées aux chocs électriques, correspondant à une électroperméabilisation non détectable, électroperméabilisation et irréversibleEn tant que projet parallèle de ce doctorat, une recherche clinique a été réalisée afin d'étudier la toxicité cutanée induite chez les patients traités par des thérapies anticancéreuses ciblées. Bien que l'efficacité de ces thérapies ne soit pas discutée, de nombreux effets cutanées secondaires graves sont associés. Dans cette étude, nous avons étudié l'opportunité de prédire l’apparition de la toxicité cutanée au moyen de la microspectroscopie Raman confocale réalisée sur la peau des patients. Nous avons réussi à déterminer un nouveau biomarqueur pharmacodynamique spécifique de la toxicité cutanée grâce aux signatures Raman de la peau des patients; alors que l'évaluation dermatologique ou histologique n'a détecté aucune modification. / This research work reports the use of various biophotonics techniques to investigate biomedical questions, from basic research (interaction between pulsed electric fields and cells) to clinical studies (skin toxicity induced in patients treated with targeted anticancer therapies).Confocal Raman microspectroscopy and terahertz microscopy have been used to investigate cell electropermeabilization process from a molecular point of view. Our results demonstrate the involvement of the proteins in cell electropermeabilization. Moreover, we have shown that the Raman signatures of the cells could be used as an accurate biomarker of the different states of the cells exposed to pulsed electric fields, corresponding to no detectable electropermeabilization, reversible and irreversible electropermeabilization.Finally, this doctorate research demonstrates the opportunity to predict skin toxicity induced by targeted anticancer therapies by means of confocal Raman microspectroscopy. We succedded to determine a novel and specific pharmacodynamic biomarker for skin toxicity based on the Raman signatures of the patient’s skin, whereas dermatological or histologicalevaluation did not detect any modifications.

Předložená dizertační práce se zabývá kombinací optických mikromanipulací s mikrospektroskopickými metodami. Využili jsme laserovou pinzetu pro transport a třídění živých mikroorganismů, například jednobuněčných řas, či kvasinek. Ramanovskou spektroskopií jsme analyzovali chemické složení jednotlivých buněk a tyto informace jsme využili k automatické selekci buněk s vybranými vlastnostmi. Zkombinovali jsme pulsní amplitudově modulovanou fluorescenční mikrospektroskopii, optické mikromanipulace a jiné techniky ke zmapování stresové odpovědi opticky zachycených buněk při různých časech působení, vlnových délkách a intenzitách chytacího laseru. Vyrobili jsme různé typy mikrofluidních čipů a zkonstruovali jsme Ramanovu pinzetu pro třídění mikro-objektů, především živých buněk, v mikrofluidním prostředí.

The aim of this diploma thesis is the application of vibrational spectroscopy in pharmaceutical analysis in studying solid pharmaceutical forms. The surface of tablet samples containing the active substance from the group of statins has been studied especially by the methods infrared microscopy. Spectral maps of samples were collected thanks to the techniques of specular reflection, attenuated total reflection (ATR) and "inverse" ATR after determining optimal conditions for measurements. In order to evaluate these measured maps, one-dimensional analysis and principal component analysis were used. As the same samples of tablets were also measured by Raman microscopy, the comparison has been provided. The measured distribution maps enable both a determination of substances in the sample and conclusion concerned a method of tablets' preparation. The method in this case is a granulation, which has been found out from a comparison of maps of generic and original medicament. The specular reflection method was selected to be the most appropriate technique for obtaining the maps of the surface of a tablet, via confrontation of particular methods consequently with consideration of their advantages and disadvantages in the measurement and data processing.

La peau est un organe particulier de l'organisme dont la fonction principale est un rôle de protection vis-à-vis du milieu extérieur. Cette fonction est assurée grâce à la structure du tissu cutané en trois couches (épiderme, derme, hypoderme). Le derme est responsable de la résistance et de la souplesse de la peau. Le composant moléculaire majeur du derme est le collagène de type I, qui est fortement altéré au cours du vieillissement chronologique. Dans ce contexte, notre étude a pour objectif d'évaluer les modifications moléculaires du collagène dermique associées au vieillissement cutané par spectroscopies vibrationnelles (diffusion Raman et absorption infrarouge). Par déconvolution de la bande Amide I du signal Raman, nous avons mis en évidence, en fonction de l'âge de la peau, des modifications au niveau des interactions entre le collagène et les molécules d'eau ; ce qui reflète un espacement croissant des faisceaux de fibres de collagène au cours du vieillissement. En micro-imagerie infrarouge polarisée, le ratio des bandes Amide I/ Amide II permet d'évaluer l'orientation des fibres de collagène qui deviennent parallèles à la surface de la peau lors du vieillissement. Des expérimentations préliminaires ont également montré la possibilité de localiser sans marquage la jonction dermo-épidermique de la peau grâce aux caractéristiques spectrales du collagène de type IV. Une analyse ciblée de cette structure nécessite de développer de nouveaux instruments basés sur la spectroscopie en champ proche (Tip Enhanced Raman Scattering, NanoIR) ; ce qui devrait permettre de suivre les altérations du collagène de type IV au cours du vieillissement cutané. / Skin is a particular organ of the body whose the main function is a protective role towards the external environment. This function is provided by the structure of skin tissues in three layers (epidermis, dermis, hypodermis). The dermis is responsible for the strength and elasticity of the skin. The major molecular component of the dermis is the type I collagen, which is strongly altered during chronological aging. In this context, our study aims at evaluating the molecular modifications of the dermal collagen associated with skin aging by vibrational spectroscopy (Raman diffusion and infrared absorption). Using curve-fitting of Raman Amide I band, modifications in the interactions between collagen and water molecules were highlighted depending of the donor age. Such result reflects an increasing spacing of the collagen fiber bundles during aging. In addition, the collagen fibers orientation can be evaluated from the amide I/ amide II ratio calculated in polarized infrared micro-imaging. It appeared that the collagen fibers become orientated parallel to the skin surface with aging. Preliminary experiments showed also the ability to localize in a label-free manner the dermo-epidermal junction of the skin using the spectral characteristics of type IV collagen. A precise analysis of this structure requires the development of new instruments based on near-field spectroscopy (Tip Enhanced Raman Scattering, NanoIR); which could permit to follow the collagen IV alterations during skin aging.