No grupo das doenças infecciosas emergentes e reemergentes, os arbovírus transmitidos por mosquitos, são considerados importantes desafios para a saúde pública. O alastramento mundial do vírus Chikungunya (CHIKV, Togaviridae, Alphavirus), acabou resultando na introdução do CHIKV no Brasil, através da transmissão zoonótica por mosquitos do gênero Aedes spp, particularmente Ae. aegypti e Ae. albopictus, duas espécies invasoras e cosmopolitas. Outro Alphavirus, o vírus Mayaro (MAYV) presente na região amazônica da América do Sul, vem apresentando indícios de uma real urbanização, elevando a preocupação sobre sua possível transmissão por mosquitos urbanos. Diante desse cenário, fica clara a necessidade da realização de estudos sobre estratégias de controle e prevenção da infecção por MAYV e CHIKV, uma vez que não há vacinas ou terapia antiviral específica para a infecção por esses arbovírus. Este projeto descreve pela primeira vez a eficiente expressão, purificação e análise de partículas semelhantes a vírus (VLP, virus-like particles) dos Alphavirus CHIKV e MAYV em células de inseto S2 (Drosophila melanogaster). Para esse fim, clonamos os genes das proteínas estruturais dos vírus MAYV e CHIKV em vetores para a expressão recombinante em células S2. Essa plataforma de expressão de proteínas provou ser adequada para o processamento de glicoproteínas do CHIKV e MAYV para produção de VLP, uma vez que detectamos a presença de partículas no sobrenadante do cultivo por Western blotting e Microscopia eletrônica de transmissão (TEM). Ainda, foi possível selecionar células para uma maior produção de VLP e estabelecer um método de purificação das partículas. / In the group of emerging and reemerging infectious diseases, mosquito-borne arboviruses are considered major public health challenges. The transmission of Chikungunya (CHIKV, Togaviridae, Alphavirus) in America continent was first reported in Central America and Caribbean region The CHIKV epidemics reached Brazil through zoonotic transmission by Aedes spp mosquitoes, particularly Ae. Aegypti and Ae. albopictus, two invasive and cosmopolitan species. Another Alphavirus, the Mayaro virus (MAYV) present mainly in the Amazon region has been showing evidence of a real urbanization, increasing concerns about its transmission by urban mosquitoes. Therefore, it is clear that studies on strategies for the control and prevention of MAYV and CHIKV infection are needed. Currently no vaccines or antiviral therapy specific for CHIKV and MAYV infection are available. This work describes for the first time an efficient expression, purification and analysis of virus-like particles (VLP) of CHIKV and MAYV Alphaviruses in S2 (Drosophila melanogaster) insect cells. The genes coding for the structural proteins of the MAYV and CHIKV viruses were cloned into vectors for recombinant expression in S2 cells. This platform proved to be suitable for the processing of CHIKV and MAYV glycoproteins and to produce VLP, since we detected the presence of particles in the culture supernatant by Western blotting and Transmission Electron Microscopy (TEM). Furthermore, it was possible to select cells for greater production of VLP and to establish a method for particle purification.

O vírus Mayaro (MAYV) é um Alphavirus artritogênico responsável por causar uma doença febril aguda com sintomas parecidos aos de Dengue não-hemorrágica, porém com o agravante, como a febre Chikungunya, de ocorrência de artralgia. Os dados epidemiológicos disponíveis ainda são poucos devido à falta de diagnóstico adequado, pois algumas das técnicas desenvolvidas apresentam dificuldades quanto à coleta de amostra, devido à curta viremia, e ao background que interfere na interpretação dos resultados, subestimando o real número dos casos de infecção. Isso é preocupante principalmente em tempos de co-circulação de outras arboviroses como Dengue, Zika e Chikungunya. Neste trabalho desenvolvemos um método de imunofluorescência indireta dirigido à detecção de anticorpos contra a glicoproteína E2 do vírus Mayaro expressa em células S2 de Drosophila melanogaster. / Mayaro virus (MAYV) is an arthritogenic Alphavirus responsible for causing an acute febrile illness with symptoms similar to non-hemorrhagic Dengue, but with the aggravation, as Chikungunya fever, to develop arthralgia. The epidemiological data available still are few due to lack of proper diagnosis, because some of the techniques developed present difficulties regarding sample collection, due to the short viremia, and background that interferes with the interpretation of the results, underestimating the actual number of cases. This is a concern especially in periods of co-circulation of many other socioeconomic impact arboviruses, such as Dengue, Zika and Chikungunya. In this work we developed an indirect immunofluorescence method to the detection of antibodies against Mayaro E2 glycoprotein expressed in Drosophila melanogaster S2 cells.

Mad1 est une protéine clé du point de contrôle du fuseau en mitose. Associée à Mad2,elle est recrutée aux kinétochores non-attachés où elle y catalyse la production du complexe inhibiteur d’anaphase. La protéine Mad1 a longtemps été décrite comme étant un simple récepteur de Mad2 aux kinétochores. Certaines études laissaient toutefois entrevoir des rôles additionnels de cette protéine en mitose comme en interphase.Afin d’explorer ces fonctions additionnelles de Mad1, j’ai étudié le phénotype mitotique associé à une déplétion de la protéine par ARN interférence dans des lignées cellulaires S2 de drosophile. J’ai également analysé des mutations et délétions du domaine N-terminal de Mad1, celui-ci présentant certaines particularités de structures primaires et secondaires tels que des sites de phosphorylation, un putatif NLS et des hélices amphipathiques. J’ai ainsi montré que le recrutement de Mad1 aux kinétochores en mitose nécessitait la phosphorylation de son domaine N-terminal. Mes analyses cytologiques ont de plus permis de déterminer que le NLS, situé dans ce même domaine N-terminal, est non seulement fonctionnel mais également essentiel à la localisation de Mad1 à l’enveloppe nucléaire et dans le nucléoplasme en interphase.J’ai finalement étudié une protéine Mad1 déplétée de son domaine N-terminal (Mad1Δ71) en spermatocytes de drosophile. Notre laboratoire a récemment montré que dans ces cellules, la protéine Mad1 fait partie d’un territoire nucléaire associé à la chromatine, appelé MINT (Mad1 containing Intranuclear Territory). Ce nouveau territoire, comportant au moins quatre autres protéines (Mad2, Mtor/Tpr, Ulp1 et Raf2), est impliqué dans la régulation de la conformation de la chromatine. Mes analyses ont révélé que la protéine Mad1 Δ71 se localisait anormalement dans le noyau, restant accolée à l’enveloppe nucléaire, et entraînait avec elle l’ensemble de ses partenaires. Ceci suggère que Mad1 est essentielle à l’organisation de ces protéines dans le nucléoplasme, mais également qu’elle pilote la mise en place du territoire MINT. / Mad1 is a key component of the spindle assembly checkpoint in mitosis. Recruitedwith Mad2 to unattached kinetochores, they catalyze the formation of the anaphase inhibitor.Mad1 has long been described as a simple receptor for Mad2 at kinetochores. However,studies are pointing toward additional roles of this protein in mitosis as well as in interphase. To explore these additional functions of Mad1, I studied the mitotic phenotypeassociated with a depletion of the protein by RNA interference in Drosophia S2 cell lines. Ialso analyzed mutations and deletions of the N-terminal domain of Mad1, this one havinginteresting features in its primary and secondary structures, namely phosphorylation sites, aputative NLS and amphipathic helices. I have shown that Mad1 recruitment to kinetochore inmitosis depends on phosphorylations of its N-terminal domain. Moreover, my cytologicalanalyses allowed me to determine that the N-terminal NLS was not only functional but alsoessential for the localization of Mad1 into the nucleus in interphase. Finally, I studied a Mad1 mutant depleted for its N-terminal region (Mad1 Δ71) indrosophila spermatocytes. Our laboratory recently showed that in these cells, Mad1 is part ofa nuclear territory associated with chromatin, named MINT (Mad1 containg IntranuclearTerritory). This new territory, composed of at least four other proteins (Mad2, Mtor/Tpr,Ulp1, Raf2), is involved in chromatin conformation regulation. My studies revealed that inthese cells, Mad1 Δ71 is abnormally localized in the nucleus, staying closed to the nuclearenvelope, and carry with it all its partners. This suggests that Mad1 is essential for the nuclearorganization of these proteins, but also that it pilots the establishment of the MINT territory.

A glicoproteína do vírus rábico (RVGP) é o antígeno capaz de induzir a formação de anticorpos neutralizantes e a resposta imune protetora contra a infecção pelo vírus rábico. Estudamos as cinéticas de expressão da RVGP e de seu RNA mensageiro (RVGPmRNA) em dois sistemas distintos de expressão recombinante: células de Drosophila melanogaster (S2) e células BHK-21 infectadas com vírus Semliki Forest Virus (SFV). Para isso, fizemos um trabalho de padronização do tratamento de amostras de cultivos celulares, adequando-as a um teste de ELISA para dosagem da RVGP e estabelecemos um método de RT-PCR quantitativa (qRT-PCR) para a dosagem do RVGPmRNA. Desenvolvemos também um novo método de titulação de partículas SFV por qRT-PCR, aplicável a praticamente qualquer construção de SFV recombinante. Em ensaios preliminares, as preparações de RVGP recombinante utilizadas para a imunização de camundongos foram capazes de induzir a formação de anticorpos neutralizantes e de conferir um bom grau de proteção ao teste de desafio intracerebral com vírus rábico. / The rabies virus glycoprotein is the major antigen able to induce a neutralizing antibody response and survival after challenge against rabies virus infection. We have studied the kinetic expression of RVGP and its messenger RNA (RVGPmRNA) in two different recombinant expression systems: stably transfected Drosophila melanogaster cells (rS2) and BHK-21 cells infected with Semliki Forest Virus carrying RVGP genetic information (SFV-RVGP). We have done a work of standardization of the cell culture samples treatment prior to RVGP quantification by ELISA, and we have developed and standardized a quantitative RT-PCR (qRT-PCR) to quantify the RVGPmRNA. We have also developed a new method of SFV particles titration by qRT-PCR, which is applicable to other constructions of recombinant SFV. We utilized the RVGP expressed by rS2 and SFV-RVGP systems on preliminary in vivo assays. The RVGP samples used to mice immunization were able to induce neutralizing antibodies and to lead to a nice level of protection against the intracerabral rabies virus challenge.

Made available in DSpace on 2016-08-17T18:39:44Z (GMT). No. of bitstreams: 1 4615.pdf: 2688296 bytes, checksum: 18c8fbe6fb83004856a32c02827d70f5 (MD5) Previous issue date: 2011-11-22 / Universidade Federal de Sao Carlos / Rabies is a zoonotic viral disease caused by a virus of the genus Lyssavirus that affects several species of mammals. Rabies remains a global public health threat that kills more than 55,000 people per year mainly in developing countries, this disease once established do not have a specific treatment. The RV envelope is composed of a glycoprotein, known as a unique antigen capable of conferring immune response against the rabies, and therefore, is the focus of research for development an efficient and safe recombinant vaccine based on this viral antigen. Cell line stably transfected S2 Drosophila melanogaster have been used in the production of many heterologous proteins and has been studied for the production of the rabies virus glycoprotein (RVGP) in our laboratory. This approach involves the selection of high producing cell populations; procedure that requires considerable periods of time (months), increasing management and costs of production. In this sense, in recent decades, many systems focused on the expression of heterologous proteins by transient expression of genes, were analyzed because they allow obtaining significant quantities of recombinant protein in a short period of time (weeks). For the use of transient transfection technology can be found a variety of methods and available agents, such as electroporation, cationic lipids, cationic polymers and calcium phosphate precipitated. The choice and optimization of each of them depends mainly on the cell type and protein being expressed. Thus, the objective of this study was to evaluate the transient expression of the glycoprotein gene of rabies virus (RVGP) in insect cells of Drosophila melanogaster S2 lineage, evaluating the vehicles transfection: calcium phosphate, cationic lipid (Cellfectin) and cationic polymer (ExGen500 and JetPEI). In order to determine the most efficient transfection agent, experiments were performed in 6 well plate and bottle of 100 mL of culture, which analyzed the influence of cell density, the concentration of DNA and transfection reagent volume on the expression of RVGP assessed by ELISA and fluorescence microscopy. Yields ranging from 50-90 ng/107cel were obtained in different experiments on multiwell plate, suggesting strong effect of ratio DNA: transfection agent used. Comparison of transfection agents showed no significant differences. In transfections made in suspension culture was analyzed the effect of the plasmid (whether or not the signal of BiP cell secretion) on the expression RVGP. When we used the plasmid containing the signal BiP (pMTiRVGP) were obtained 160 ng/107cel of RVGP production, and 200 ng/mL of volumetric production without significant differences between the different transfection agents. However, significant differences were found when we used the plasmid not containing the signal BiP (pMTRVGP), with the RVGP production was 60 ng/107cells in cells transfected with Cellfectin, ExGen500 and calcium phosphate, except in cells transfected with JetPEI was reached a production of 120 ng/107cells. In preliminary experiment bottle type "spinner" with a working volume of 60 mL were achieved expressions of 140 ng/107cel of RVGP in cells transfected with JetPEI and calcium phosphate. This suggests that optimization of culture conditions and transfection are possible to increase recombinant protein expression in cultured on a large scale. / A raiva é uma enfermidade causada por um vírus do gênero Lyssavirus que afeta várias espécies de mamíferos. Esta doença apresenta um alto custo social e econômico principalmente em países em desenvolvimento. Na superfície do vírus da raiva está localizada a glicoproteína do vírus, reconhecida como antígeno capaz de conferir resposta imunológica contra a raiva, sendo, o foco de pesquisas no desenvolvimento de uma vacina recombinante. Células da linhagem Drosophila melanogaster S2 estavelmente transfectadas têm sido usadas na produção de muitas proteínas heterólogas e tem sido estudada para a produção da glicoproteína do vírus da raiva (RVGP) em nosso laboratório. A abordagem para a obtenção de linhagens recombinantes estáveis envolve a seleção de populações celulares altamente produtoras; sendo um processo que requer consideráveis períodos de tempo (meses), uma elevada manipulação e altos custos de produção. Neste sentido, nas últimas décadas, muitos sistemas focados na expressão de proteínas heterólogas através da expressão transiente de genes foram analisados, porque eles permitem a obtenção de quantidades consideráveis de proteína recombinante em um curto período de tempo (semanas). Para o uso da tecnologia de transfecção transiente pode ser encontrada uma variedade de métodos e agentes disponíveis, tais como eletroporação, lipídeos catiônicos, polímeros catiônicos e fosfato de cálcio. Assim, o objetivo deste trabalho foi avaliar a expressão transiente do gene da glicoproteína do vírus da raiva (RVGP) em células de inseto da linhagem Drosophila melanogaster S2, avaliando os veículos de transfecção fosfato de cálcio, lipídeo catiônico (Cellfectin) e polímero catiônico (ExGen500 e JetPEI). A fim de determinar o agente de transfecção mais eficiente, foram feitos experimentos em placa de 6 poços e frasco de cultivo de 100mL, onde foram analisados a influência da densidade celular; a concentração de DNA, o volume do reagente de transfecção sobre a expressão da RVGP analisada através do método de ELISA. Quantidades de RVGP que variaram entre 50-90 ng/107cel foram obtidas nos diferentes experimentos feitos em placa, sugerindo um efeito da relação DNA: agente de transfecção. A comparação entre os agentes de transfecção não mostrou diferenças significativas. Nas transfecções feitas em cultura em suspensão foi analisado o efeito de transfectar o plasmídeo para expressão de RVGP contendo ou não o sinal de secreção celular BiP. Quando foi usado o plasmídeo contendo o sinal BiP (pMTiRVGP) foram atingidas valores de RVGP de 160 ng/107cel e produções volumétricas de 200 ng/mL, porém sem diferenças significativas entre os diferentes agentes de transfecção. Entretanto, foram encontradas diferenças quando foi usado o plasmídeo não contendo o sinal BiP (pMTRVGP), onde a produção de RVGP foi de 60 ng/107cells nas células transfectadas com Cellfectin, ExGen500 e fosfato de cálcio, porém as células transfectadas com JetPEI obtiveram uma produção de 120 ng/107cels de RVGP. Em experimento em frasco de cultivo tipo spinner com volume de trabalho de 60 mL, foram atingidas expressões de RVGP de 140 ng/107cel para células transfectadas com JetPEI e fosfato de cálcio, sugerindo que otimizações nas condições de cultivo e transfecção ainda podem ser testadas visando aumentar a expressão da proteína recombinante em cultivos em larga escala.

A glicoproteína do vírus rábico (RVGP) é o antígeno capaz de induzir a formação de anticorpos neutralizantes e a resposta imune protetora contra a infecção pelo vírus rábico. Estudamos as cinéticas de expressão da RVGP e de seu RNA mensageiro (RVGPmRNA) em dois sistemas distintos de expressão recombinante: células de Drosophila melanogaster (S2) e células BHK-21 infectadas com vírus Semliki Forest Virus (SFV). Para isso, fizemos um trabalho de padronização do tratamento de amostras de cultivos celulares, adequando-as a um teste de ELISA para dosagem da RVGP e estabelecemos um método de RT-PCR quantitativa (qRT-PCR) para a dosagem do RVGPmRNA. Desenvolvemos também um novo método de titulação de partículas SFV por qRT-PCR, aplicável a praticamente qualquer construção de SFV recombinante. Em ensaios preliminares, as preparações de RVGP recombinante utilizadas para a imunização de camundongos foram capazes de induzir a formação de anticorpos neutralizantes e de conferir um bom grau de proteção ao teste de desafio intracerebral com vírus rábico. / The rabies virus glycoprotein is the major antigen able to induce a neutralizing antibody response and survival after challenge against rabies virus infection. We have studied the kinetic expression of RVGP and its messenger RNA (RVGPmRNA) in two different recombinant expression systems: stably transfected Drosophila melanogaster cells (rS2) and BHK-21 cells infected with Semliki Forest Virus carrying RVGP genetic information (SFV-RVGP). We have done a work of standardization of the cell culture samples treatment prior to RVGP quantification by ELISA, and we have developed and standardized a quantitative RT-PCR (qRT-PCR) to quantify the RVGPmRNA. We have also developed a new method of SFV particles titration by qRT-PCR, which is applicable to other constructions of recombinant SFV. We utilized the RVGP expressed by rS2 and SFV-RVGP systems on preliminary in vivo assays. The RVGP samples used to mice immunization were able to induce neutralizing antibodies and to lead to a nice level of protection against the intracerabral rabies virus challenge.

La phosphorylation est une modification post-traductionnelle modulant l’activité, la conformation ou la localisation d’une protéine et régulant divers processus. Les kinases et phosphatases sont responsables de la dynamique de phosphorylation et agissent de manière coordonnée. L’activation anormale ou la dérégulation de kinases peuvent conduire au développement de cancers ou de désordres métaboliques. Les récepteurs tyrosine kinase (RTKs) sont souvent impliqués dans des maladies et la compréhension des mécanismes régissant leur régulation permet de déterminer les effets anticipés sur leurs substrats. Dans ce contexte, le but de cette thèse est d’identifier les évènements de phosphorylation intervenant dans la voie de l’insuline chez la drosophile impliquant un RTK : le récepteur de l’insuline (InR). La cascade de phosphorylation déclenchée suite à l’activation du récepteur est conservée chez le mammifère. Afin d’étudier le phosphoprotéome de cellules S2 de drosophile, nous avons utilisé une étape d’enrichissement de phosphopeptides sur dioxyde de titane suivie de leur séparation par chromatographie liquide (LC) et mobilité ionique (FAIMS). Les phosphopeptides sont analysés par spectrométrie de masse en tandem à haute résolution. Nous avons d’abord démontré les bénéfices de l’utilisation du FAIMS comparativement à une étude conventionnelle en rapportant une augmentation de 50 % dans le nombre de phosphopeptides identifiés avec FAIMS. Cette technique permet de séparer des phosphoisomères difficilement distinguables par LC et l’acquisition de spectres MS/MS distincts où la localisation précise du phosphate est déterminée. Nous avons appliqué cette approche pour l’étude des phosphoprotéomes de cellules S2 contrôles ou traitées à l’insuline et avons identifié 32 phosphopeptides (sur 2 660 quantifiés) pour lesquels la phosphorylation est modulée. Étonnamment, 50 % des cibles régulées possèdent un site consensus pour la kinase CK2. Une stratégie d’inhibition par RNAi a été implémentée afin d’investiguer le rôle de CK2 dans la voie de l’insuline. Nous avons identifié 6 phosphoprotéines (CG30085, su(var)205, scny, protein CDV3 homolog, D1 et mu2) positivement régulées suite à l’insuline et négativement modulées après le traitement par RNAi CK2. Par essai kinase in vitro, nous avons identifié 29 cibles directes de CK2 dont 15 corrélaient avec les résultats obtenus par RNAi. Nous avons démontré que la phosphorylation de su(var)205 (S15) était modulée par l’insuline en plus d’être une cible directe de CK2 suite à l’expérience RNAi et à l’essai kinase. L’analyse des données phosphoprotéomiques a mis en évidence des phosphopeptides isomériques dont certains étaient séparables par FAIMS. Nous avons déterminé leur fréquence lors d’études à grande échelle grâce à deux algorithmes. Le script basé sur les différences de temps de rétention entre isomères a identifié 64 phosphoisomères séparés par LC chez la souris et le rat (moins de 1 % des peptides identifiés). Chez la drosophile, 117 ont été répertoriés en combinaison avec une approche ciblée impliquant des listes d’inclusion. Le second algorithme basé sur la présence d’ions caractéristiques suite à la fragmentation de formes qui co-éluent a rapporté 23 paires isomériques. L’importance de pouvoir distinguer des phosphoisomères est capitale dans le but d’associer une fonction biologique à un site de phosphorylation précis qui doit être identifié avec confiance. / Phosphorylation is a reversible post-translational modification that modulates protein activity, and can impart conformational changes and affect translocation of their protein substrates. Kinases and phosphatases are responsible for the dynamic of changes in protein phosphorylation and act in a coordinated manner. Abnormal activation or misregulation of kinase activity can lead to the development of cancers and metabolic disorders. Tyrosine kinase receptor (RTK) associated signaling pathways are often implicated in numerous diseases and the further understanding of mechanisms affecting their regulation is necessary to determine their activity and effects anticipated on their substrates. In this context, the primary objective of this thesis is to study the phosphorylation events arising from the activation of the insulin receptor (InR) following stimulation of drosophila S2 cells with insulin. The phosphorylation cascade triggered after InR activation is conserved in mammals. In order to study the phosphoproteome of drosophila S2 cells, we enriched phosphopeptides on titanium dioxide (TiO2) stationary phase prior to their separation by liquid chromatography (LC) and ion mobility (FAIMS) mass spectrometry (MS). Phosphopeptides were then analysed by tandem MS at high resolution. We first compared the benefits of FAIMS to conventional LC-MS, and observed a 50% increase in the number of identified phosphopeptides when using ion mobility. FAIMS enables the separation of phosphoisomers that are typically unresolved by LC, enabling high confidence assignment of modification sites via distinct MS/MS spectra. This approach was used to profile phosphorylation changes taking place between control and insulin-treated drosophila cells and enabled the identification of 32 phosphopeptides (out of 2 660 quantified) showing differential regulation. Interestingly, 50% of the regulated targets have a CK2 consensus site. These preliminary experiments were followed-up by RNAi mediated inhibition of CK2 and revealed that 6 phosphoproteins (CG30085, su(var)205, scny, protein CDV3 homolog, D1 and mu2) were positively modulated after insulin stimulation and negatively regulated after CK2 RNAi treatment. Using in vitro kinase assay, we identified 29 direct CK2 targets, of which 15 were correlated with results from the CK2 RNAi experiment. We demonstrated specifically that the su(var)205 (S15) is regulated by insulin and is a direct CK2 target based on RNAi and kinase assays. Our phosphoproteomics data also highlighted the presence of isomeric phosphopeptides, several of which could be distinguished using FAIMS. We developed two algorithms to determine the occurrence of phosphoisomers in large scale studies. The first algorithm based on differences in retention times between isomers identified 64 candidates in mouse and rat phosphoproteome datasets corresponding to less than 1% of all identified phosphopeptides. We also identified 117 isomer candidates in drosophila using a targeted LC-MS/MS approach with inclusion lists. The second algorithm is based on the presence of characteristic fragment ions present in MS/MS spectra of co-eluting or partially resolved species and allowed the identification of 23 isomeric pairs. The ability to distinguish phosphoisomers in large-scale phosphoproteome datasets is of significance to correlate phosphorylation events taking place on specific residues with biological activities.

La phosphorylation est une modification post-traductionnelle modulant l’activité, la conformation ou la localisation d’une protéine et régulant divers processus. Les kinases et phosphatases sont responsables de la dynamique de phosphorylation et agissent de manière coordonnée. L’activation anormale ou la dérégulation de kinases peuvent conduire au développement de cancers ou de désordres métaboliques. Les récepteurs tyrosine kinase (RTKs) sont souvent impliqués dans des maladies et la compréhension des mécanismes régissant leur régulation permet de déterminer les effets anticipés sur leurs substrats. Dans ce contexte, le but de cette thèse est d’identifier les évènements de phosphorylation intervenant dans la voie de l’insuline chez la drosophile impliquant un RTK : le récepteur de l’insuline (InR). La cascade de phosphorylation déclenchée suite à l’activation du récepteur est conservée chez le mammifère. Afin d’étudier le phosphoprotéome de cellules S2 de drosophile, nous avons utilisé une étape d’enrichissement de phosphopeptides sur dioxyde de titane suivie de leur séparation par chromatographie liquide (LC) et mobilité ionique (FAIMS). Les phosphopeptides sont analysés par spectrométrie de masse en tandem à haute résolution. Nous avons d’abord démontré les bénéfices de l’utilisation du FAIMS comparativement à une étude conventionnelle en rapportant une augmentation de 50 % dans le nombre de phosphopeptides identifiés avec FAIMS. Cette technique permet de séparer des phosphoisomères difficilement distinguables par LC et l’acquisition de spectres MS/MS distincts où la localisation précise du phosphate est déterminée. Nous avons appliqué cette approche pour l’étude des phosphoprotéomes de cellules S2 contrôles ou traitées à l’insuline et avons identifié 32 phosphopeptides (sur 2 660 quantifiés) pour lesquels la phosphorylation est modulée. Étonnamment, 50 % des cibles régulées possèdent un site consensus pour la kinase CK2. Une stratégie d’inhibition par RNAi a été implémentée afin d’investiguer le rôle de CK2 dans la voie de l’insuline. Nous avons identifié 6 phosphoprotéines (CG30085, su(var)205, scny, protein CDV3 homolog, D1 et mu2) positivement régulées suite à l’insuline et négativement modulées après le traitement par RNAi CK2. Par essai kinase in vitro, nous avons identifié 29 cibles directes de CK2 dont 15 corrélaient avec les résultats obtenus par RNAi. Nous avons démontré que la phosphorylation de su(var)205 (S15) était modulée par l’insuline en plus d’être une cible directe de CK2 suite à l’expérience RNAi et à l’essai kinase. L’analyse des données phosphoprotéomiques a mis en évidence des phosphopeptides isomériques dont certains étaient séparables par FAIMS. Nous avons déterminé leur fréquence lors d’études à grande échelle grâce à deux algorithmes. Le script basé sur les différences de temps de rétention entre isomères a identifié 64 phosphoisomères séparés par LC chez la souris et le rat (moins de 1 % des peptides identifiés). Chez la drosophile, 117 ont été répertoriés en combinaison avec une approche ciblée impliquant des listes d’inclusion. Le second algorithme basé sur la présence d’ions caractéristiques suite à la fragmentation de formes qui co-éluent a rapporté 23 paires isomériques. L’importance de pouvoir distinguer des phosphoisomères est capitale dans le but d’associer une fonction biologique à un site de phosphorylation précis qui doit être identifié avec confiance. / Phosphorylation is a reversible post-translational modification that modulates protein activity, and can impart conformational changes and affect translocation of their protein substrates. Kinases and phosphatases are responsible for the dynamic of changes in protein phosphorylation and act in a coordinated manner. Abnormal activation or misregulation of kinase activity can lead to the development of cancers and metabolic disorders. Tyrosine kinase receptor (RTK) associated signaling pathways are often implicated in numerous diseases and the further understanding of mechanisms affecting their regulation is necessary to determine their activity and effects anticipated on their substrates. In this context, the primary objective of this thesis is to study the phosphorylation events arising from the activation of the insulin receptor (InR) following stimulation of drosophila S2 cells with insulin. The phosphorylation cascade triggered after InR activation is conserved in mammals. In order to study the phosphoproteome of drosophila S2 cells, we enriched phosphopeptides on titanium dioxide (TiO2) stationary phase prior to their separation by liquid chromatography (LC) and ion mobility (FAIMS) mass spectrometry (MS). Phosphopeptides were then analysed by tandem MS at high resolution. We first compared the benefits of FAIMS to conventional LC-MS, and observed a 50% increase in the number of identified phosphopeptides when using ion mobility. FAIMS enables the separation of phosphoisomers that are typically unresolved by LC, enabling high confidence assignment of modification sites via distinct MS/MS spectra. This approach was used to profile phosphorylation changes taking place between control and insulin-treated drosophila cells and enabled the identification of 32 phosphopeptides (out of 2 660 quantified) showing differential regulation. Interestingly, 50% of the regulated targets have a CK2 consensus site. These preliminary experiments were followed-up by RNAi mediated inhibition of CK2 and revealed that 6 phosphoproteins (CG30085, su(var)205, scny, protein CDV3 homolog, D1 and mu2) were positively modulated after insulin stimulation and negatively regulated after CK2 RNAi treatment. Using in vitro kinase assay, we identified 29 direct CK2 targets, of which 15 were correlated with results from the CK2 RNAi experiment. We demonstrated specifically that the su(var)205 (S15) is regulated by insulin and is a direct CK2 target based on RNAi and kinase assays. Our phosphoproteomics data also highlighted the presence of isomeric phosphopeptides, several of which could be distinguished using FAIMS. We developed two algorithms to determine the occurrence of phosphoisomers in large scale studies. The first algorithm based on differences in retention times between isomers identified 64 candidates in mouse and rat phosphoproteome datasets corresponding to less than 1% of all identified phosphopeptides. We also identified 117 isomer candidates in drosophila using a targeted LC-MS/MS approach with inclusion lists. The second algorithm is based on the presence of characteristic fragment ions present in MS/MS spectra of co-eluting or partially resolved species and allowed the identification of 23 isomeric pairs. The ability to distinguish phosphoisomers in large-scale phosphoproteome datasets is of significance to correlate phosphorylation events taking place on specific residues with biological activities.

No description available.