Le cancer de l’ovaire représente la quatrième cause de décès par cancer chez la femme. En France, près de 4 500 nouveaux cas par an sont diagnostiqués, avec plus de 3000 décès chaque année. Ce cancer reste longtemps silencieux : un diagnostic souvent tardif, et le développent d’une chimiorésistance qui touche jusqu'à 75 % des patientes, expliquent le fort taux de mortalité et une survie à 5 ans estimée à moins de 45 %. Les mécanismes responsables du développement de la chimiorésistance sont nombreux. Aujourd’hui, un fort intérêt est porté au développement de nouvelles stratégies de traitement en ciblant les protéines cellulaires inhibitrices de l’apoptose (mort cellulaire programmée). Deux familles de protéines jouent un rôle cruciale dans la régulation de l’apoptose : la famille Bcl-2 et la famille IAP. Nous nous sommes intéressés à la synthèse de petites molécules abiotiques, appelées foldamères. Ces composés sont capables de perturber les interactions entre les protéines anti-apoptotiques des familles Bcl-2 ou IAP, surexprimées dans le cancer de l’ovaire, et leurs partenaires biologiques (pro-apoptotiques). Ceci permet de libérer les protéines pro-apoptotiques et rétablir l’apoptose dans les cellules cancéreuses. Ce travail de thèse a permis la conception, la synthèse, la caractérisation et l’évaluation biologique de molécules inhibitrices des protéines anti-apoptotiques Mcl-1 et Bcl-xL de la famille Bcl-2, et de possibles inhibiteurs de la protéine XIAP de la famille IAP. / Ovarian cancer is the 4th leading cause of cancer death in women. In France, nearly 4,500 new cases per year are diagnosed, with more than 3,000 deaths each year. This cancer remains silent for a long time: late diagnosis and chemoresistance development for up to 75% of patients, explain the high mortality rate and the 5-year survival estimated at less than 45%. Mechanisms responsible for the development of drug resistance are numerous. Today, there is a strong interest in the development of new treatment strategies by targeting cellular proteins that inhibit apoptosis (programmed cell death). Two families of proteins play a crucial role in the regulation of apoptosis: the Bcl-2 family and the IAP family. We are interested in the synthesis of small abiotic molecules, called foldamers. These compounds are able to disrupting the interactions between the anti-apoptotic proteins of the Bcl-2 or IAP families, overexpressed in ovarian cancer, and their biological (pro-apoptotic) partners. This releases the pro-apoptotic proteins and restores apoptosis in the ovarian cancer cells. This PhD work allowed the design, synthesis, characterization and biological evaluation of inhibitors of Mcl-1 and Bcl-xL anti-apoptotic proteins of Bcl-2 family, and the development of possible inhibitors of the XIAP protein of IAP family.

As tecnologias de redes sem fio passaram a atender não só às aplicações corporativas mais sofisticadas como também àquelas envolvendo desde o rastreamento de animais, monitoramento de estruturas e automação industrial até o gerenciamento de utilidades urbanas. Este projeto de pesquisa aborda o desenvolvimento de um protocolo de rede mesh multi-hop segundo a especificação IEEE 802.15.4, com o uso de coordenadas geográficas de cada nó para o roteamento de dados em aplicações de iluminação pública. Para o desenvolvimento do protocolo de rede, é considerada a biblioteca de rotinas de interface de rede denominada Simple MAC (SMAC). Tal biblioteca pode ser utilizada para a elaboração do protocolo de roteamento geográfico destinado à rede mesh multi-hop. Paralelamente, propõe-se a descrição de um método a ser adotado para a inserção do protocolo de roteamento geográfico no SMAC. Os códigos, desenvolvidos em linguagem de programação C, são portados para a plataforma de desenvolvimento dos nós de comunicação de um toolkit específico e submetidos a ensaios experimentais. Os resultados englobam a geração de conhecimento teórico e prático a respeito das redes de sensores sem fio, bem como o desenvolvimento de um software aberto para este tipo de rede. As propriedades de auto-organização da rede, robustez e baixa latência são comprovadas nos ensaios experimentais. / The technologies of wireless networks have to serve not only the most sophisticated business applications but also those that involve the tracking of animals, monitoring of structures, industrial automation and the management of urban utilities. This research project addresses the development of a protocol for multi-hop mesh network according to IEEE 802.15.4, with the use of geographical coordinates of each node for routing data in applications such as street lighting. In order to develop the network protocol, the routines library of the network interface, called Simple MAC (SMAC), is considered. This library can be used for establishing the geographic routing protocol destined for the multi-hop mesh network. In parallel it is proposed to describe a method to be adopted for the inclusion of geographic routing protocol in SMAC. The codes, developed in C programming language, are ported to the development platform of communication nodes of a specific toolkit and subjected to experimental tests. The results include the generation of theoretical and practical knowledge regarding the wireless sensor networks, as well as the development of open software for this type of network. The properties of self-organization of the network, robustness and low latency are proven in experimental tests.

As tecnologias de redes sem fio passaram a atender não só às aplicações corporativas mais sofisticadas como também àquelas envolvendo desde o rastreamento de animais, monitoramento de estruturas e automação industrial até o gerenciamento de utilidades urbanas. Este projeto de pesquisa aborda o desenvolvimento de um protocolo de rede mesh multi-hop segundo a especificação IEEE 802.15.4, com o uso de coordenadas geográficas de cada nó para o roteamento de dados em aplicações de iluminação pública. Para o desenvolvimento do protocolo de rede, é considerada a biblioteca de rotinas de interface de rede denominada Simple MAC (SMAC). Tal biblioteca pode ser utilizada para a elaboração do protocolo de roteamento geográfico destinado à rede mesh multi-hop. Paralelamente, propõe-se a descrição de um método a ser adotado para a inserção do protocolo de roteamento geográfico no SMAC. Os códigos, desenvolvidos em linguagem de programação C, são portados para a plataforma de desenvolvimento dos nós de comunicação de um toolkit específico e submetidos a ensaios experimentais. Os resultados englobam a geração de conhecimento teórico e prático a respeito das redes de sensores sem fio, bem como o desenvolvimento de um software aberto para este tipo de rede. As propriedades de auto-organização da rede, robustez e baixa latência são comprovadas nos ensaios experimentais. / The technologies of wireless networks have to serve not only the most sophisticated business applications but also those that involve the tracking of animals, monitoring of structures, industrial automation and the management of urban utilities. This research project addresses the development of a protocol for multi-hop mesh network according to IEEE 802.15.4, with the use of geographical coordinates of each node for routing data in applications such as street lighting. In order to develop the network protocol, the routines library of the network interface, called Simple MAC (SMAC), is considered. This library can be used for establishing the geographic routing protocol destined for the multi-hop mesh network. In parallel it is proposed to describe a method to be adopted for the inclusion of geographic routing protocol in SMAC. The codes, developed in C programming language, are ported to the development platform of communication nodes of a specific toolkit and subjected to experimental tests. The results include the generation of theoretical and practical knowledge regarding the wireless sensor networks, as well as the development of open software for this type of network. The properties of self-organization of the network, robustness and low latency are proven in experimental tests.

Les glioblastomes (GBs) sont les tumeurs primitives du SNC les plus agressives de l’adulte. Les causes d’échec thérapeutiques sont multiples, comme une résistance des cellules tumorales à l’apoptose, l’existence de cellules souches cancéreuses ou un microenvironnement pro-tumoral. La découverte de molécules thérapeutiques qui pourraient avoir une action pléiotrope est particulièrement attractive. Dans ce contexte nous nous sommes intéressés aux mimétiques de Smac (MS), antagonistes des inhibiteurs de l’apoptose (IAP), qui inhibent le plus souvent cIAP1, cIAP2, XIAP et ML-IAP. Nous avons recherché si les IAP pouvaient être des cibles thérapeutiques dans les GBs humains en étudiant leur expression et leurs valeurs pronostiques éventuelles : les IAP sont exprimés dans les GBs et ML-IAP est associé à un plus mauvais pronostic. Nous avons choisi d’utiliser pour la suite de nos expériences, un MS qui avait une action sur les IAP et en particulier ML-IAP : le GDC-0152. Le GDC-0152 induit l’apoptose in vitro, augmente la survie des souris porteuses de GB et ralentit la croissance tumorale in vivo. Ensuite nous avons recherché si l’effet du GDC-0152 pouvait être différent en fonction du taux d'oxygène. En effet, les GBs sont des tumeurs hypoxiques. Nous avons cultivé en normoxie et en hypoxie, quatre lignées de cellules souches de GBs. En normoxie, le GDC-0152 induit la différenciation des cellules souches (voie NF-κB) et en hypoxie il induit l’apoptose et diminue la prolifération cellulaire (voie ATR).Ces travaux soulignent l’importance du modèle préclinique utilisé dans la caractérisation de l'effet de nouvelles molécules et le potentiel thérapeutique des MS dans les GBs. / Glioblastomas (GBs) are the most aggressive primary brain tumors in adults. The causes of therapeutic failure are unknown and are multiples, such as tumor cell resistance to apoptosis, the presence of cancer stem cells or a pro-tumor microenvironment. Thus, the discovery of therapeutic molecules with pleiotropic action is particularly interesting. In this context, we are interested in smac mimetics (SM), antagonists of inhibitor of apoptosis proteins (IAPs) and most often antagonize cIAP1, cIAP2, XIAP and ML-IAP.We investigated whether IAPs could be attractive therapeutic targets in human GBs by studying their expression and their possible prognostic values. All IAPs were expressed in various degrees in GBs and ML-IAP was associated with a worse prognosis. Therefore, we chose GDC-0152 for the rest of our experiments because it antagonizes the different IAPs and in particular ML-IAP. We showed that GDC-0152 induces apoptosis in vitro, increases the survival of GB-bearing mice and slows tumor growth in vivo.We investigated whether the effect of GDC-0152 could be different depending on the oxygen level. Indeed, GBs are part of the most hypoxic tumors. For this purpose, four GB stem cell lines were grown in normoxia and hypoxia. We found that GDC-0152 has an anti-tumor effect regardless of oxygen level, but the signaling pathways involved were different. In normoxia, GDC-0152 induces differentiation of GB stem cells (NF-κB pathway) and in hypoxia it induces apoptosis and decreases cell proliferation (ATR pathway).This work highlights the importance of the preclinical model used in the characterization of a new molecule effects and the therapeutic potential of SM in GBs.

Das Ovarialkarzinom ist eines der tödlichsten Malignome in der Gynäkologie und birgt eine große therapeutische Herausforderung. Trotz Platin und Taxan haltiger Chemotherapie liegt die Rezidivrate des Ovarialkarzinoms bei 70%. Tumor necrosis factor-related apoptosis-inducing ligand (TRAIL) gilt aufgrund seiner Eigenschaft spezifisch in Krebszellen Apoptose zu induzieren ohne normalen Körperzellen zu schaden in der Krebsforschung als vielversprechendes Therapeutikum. Seit einiger Zeit ist jedoch ersichtlich, dass 50% der Zelllinien und die Mehrheit aller primären humanen Krebszellen resistent für TRAIL induzierte Apoptose sind (Koschny, Walczak et al. 2007) und zunächst sensitiviert werden müssen. In dieser Studie konnte gezeigt werden, dass primäre Ovarialkarzinomzellen die mit Hilfe von EpCAM Dynabeads aus der Aszites von Krebspatientinnen isoliert wurden, sowohl mit Bortezomib (Proteasominhibitor) als auch mit PIK75 (PI3K- Inhibitor)spezifisch für TRAIL induzierte Apoptose sensitiviert werden konnten. Desweiteren konnte gezeigt werden, dass diese Kombinationstherapie normale hämatopoietische Zellen nicht beschädigt. Dies bekräftigt vor allem die Eigenschaft von TRAIL, krebszellspezifisch Apoptose zu induzieren. Wichtig ist vor allem, dass diese Kombinationstherapie sogar Chemotherapie resistente primäre Ovarialkarzinomzellen in Apoptose führen konnte.

Smac-Mimetika (SMCs) sind eine Klasse von Tetrapeptid-abgeleiteten Medikamenten, die dem homodimeren, pro-apoptotischen Protein Smac nachempfunden sind. Sie binden und hemmen die Apoptose-Inhibitoren (IAPs), eine Klasse von anti-apoptotischen Proteinen, die von vielen medikamentenresistenten Krebszellen überexprimiert werden. In dieser Arbeit wurden Strategien zur Steigerung und Kontrolle der Aktivität von SMCs durch Konjugation an Oligonukleotide (ON) untersucht. ONs wie Desoxyribonukleinsäure (DNA) oder das peptidbasierte Analogon Peptidnukleinsäure (PNA) bieten einzigartige Erkennungseigenschaften, die zur Detektion und/oder zur Modulation der Expression krebsspezifischer Genprodukte genutzt werden können. Letzteres kann z. B. mit Antisense-Oligonukleotiden (ASOs) erreicht werden, kurzen einzelsträngigen DNA- oder RNA-Molekülen, die die Translation einer komplementären Zielsequenz blockieren. Im ersten Teil der Arbeit wurden Konjugate aus SMCs und ASOs auf Synergie-Effekte getestet. Viele menschliche Krebszelllinien sind gegen SMCs resistent, weil andere anti-apoptotische Proteine wie das zelluläre FLICE-ähnliche Protein (c-FLIP) als Ausfallsicherung wirken. Es konnte gezeigt werden, dass diese Resistenz durch Kupplung eines SMC an ein anti-c-FLIP ASO überwunden werden kann. Im zweiten Teil wurden kurze ON-Sonden verwendet, um ein templiertes Reaktionssystem zur gezielten Aktivierung eines SMCs in Gegenwart von X-linked Apoptose-Inhibitor (XIAP) mRNA zu erzeugen. Es wurden zwei verschiedene Ansätze untersucht: Ein templierter Acyl-Transfer, bei dem hochaffine, bivalente SMCs aus niedrig affinen, monovalenten Vorläufern erzeugt werden und eine Demaskierung der für die Bindungsaffinität von SMCs entscheidenden, N-terminalen Aminogruppe durch templierte Reduktion eines Azids. Für die zweite Strategie wurden zwei verschiedene Reaktionen verglichen, die Staudinger-Reduktion mit Phosphinen und eine katalytische Photoreduktion mit einem Ruthenium-Komplex. / Smac mimetic compounds (SMCs) are a class of tetrapeptide-derived drugs, modelled after the homodimeric, pro-apoptotic protein Smac. They bind and antagonize Inhibitor of Apoptosis Proteins (IAPs), a class of anti-apoptotic proteins overexpressed by many drug-resistant cancer cells. In this work, strategies to enhance and control the activity of SMCs by conjugating them to oligo-nucleotides (ON) were investigated. ONs like deoxyribonucleic acid (DNA) or the peptide-based analog peptide nucleic acid (PNA) offer unique recognition properties that can be used to detect and/or modulate the expression of cancer-specific gene products. The latter can be achieved with antisense oligonucleotides (ASOs), short single-stranded DNA or RNA molecules that block the translation of a complementary sequence of interest. In the first part of this work, conjugates between SMCs and ASOs were tested for synergy. Many human cancer cell lines are resistant to SMCs because other anti-apoptotic proteins like the cellular FLICE-like protein (c-FLIP) act as a failsafe. It could be demonstrated that by joining an SMC with an anti-c-FLIP ASO this resistance can be overcome. In the second part, short ON probes were used to create a templated reaction system to conditionally activate an SMC in the presence of x-linked inhibitor of apoptosis (XIAP) mRNA. Two different approaches were explored: A templated acyl transfer that yields high affinity bivalent SMCs from low affinity, monovalent precursors and unmasking of the N-terminal amino group, which is crucial for the binding affinity of SMCs, by templated reduction of an azide. For the second strategy, two different chemistries were compared, Staudinger reduction with phosphines and a catalytic photoreduction using a ruthenium complex.

Programmed cell death (apoptosis) is the most common mechanism of cell death in eukaryotes. The ability of cancer cells to evade and inhibit apoptosis has become a hallmark feature of cancer. This is accomplished through a family of proteins known as the inhibitor of apoptosis proteins (IAPs). X-Linked inhibitor of apoptosis protein (XIAP) is one of the best characterized IAPs. XIAP suppresses apoptosis by forming complexes with cysteine-aspartic proteases (caspase), through one of its baculovirus IAP repeat (BIR) domains. Its activity is endogenously antagonized by a second mitochondria derived activator of caspase (Smac). The anti-apoptotic behaviour of XIAP and the critical role it plays in the apoptotic program makes the Smac-XIAP interaction an important drug target. To this end, our laboratory is interested in synthesizing biologically related Smac mimetics which can induce apoptosis in a MDA-MB-231 cell line. Efforts have focused on (1) understanding BIR domain binding sites which allow for this interaction, and (2) the design and synthesis of molecules which are much more effective at inducing apoptosis compared to other well known analogues. Through the synthesis and evaluation of various divalent Smac mimetics we have been able to support the hypothesis that the likely binding site on XIAP is the BIR3 domain. As well, through the synthesis of a library of novel compounds, as described in the thesis, we have been able to assess the nature of the linker which joins the two tetrapeptide units. In our effort to understand which domains Smac binds with, various divalent analogues were synthesized containing MeAVPI-linker-IPVMeA (forward-reverse) and MeAVPI-linker-MeAVPI (forward-forward) sequence, which incorporated linkers with varying degrees of flexibility. We hypothesized that the forward-forward divalent mimetics would have decreased activity compared to the peptides synthesized in a forward-reverse fashion. Lastly, information gathered from structure activity relationship (SAR) studies have shown that substituting the lysine (P2) and isoleucine residues (P4) in the AVPI protein can create more potent inducers of apoptosis than its native AVPI sequence. As one of the most potent Smac mimetic that has been previously made known contains an alkyne bridge at P2 and a large hydrophobic moiety at P4, we hypothesized that similar Smac mimetics containing a propargyl glycine residue at P2 and a bulky hydrophobic moiety at P4 will be much more potent in inducing apoptosis.

Programmed cell death (apoptosis) is the most common mechanism of cell death in eukaryotes. The ability of cancer cells to evade and inhibit apoptosis has become a hallmark feature of cancer. This is accomplished through a family of proteins known as the inhibitor of apoptosis proteins (IAPs). X-Linked inhibitor of apoptosis protein (XIAP) is one of the best characterized IAPs. XIAP suppresses apoptosis by forming complexes with cysteine-aspartic proteases (caspase), through one of its baculovirus IAP repeat (BIR) domains. Its activity is endogenously antagonized by a second mitochondria derived activator of caspase (Smac). The anti-apoptotic behaviour of XIAP and the critical role it plays in the apoptotic program makes the Smac-XIAP interaction an important drug target. To this end, our laboratory is interested in synthesizing biologically related Smac mimetics which can induce apoptosis in a MDA-MB-231 cell line. Efforts have focused on (1) understanding BIR domain binding sites which allow for this interaction, and (2) the design and synthesis of molecules which are much more effective at inducing apoptosis compared to other well known analogues. Through the synthesis and evaluation of various divalent Smac mimetics we have been able to support the hypothesis that the likely binding site on XIAP is the BIR3 domain. As well, through the synthesis of a library of novel compounds, as described in the thesis, we have been able to assess the nature of the linker which joins the two tetrapeptide units. In our effort to understand which domains Smac binds with, various divalent analogues were synthesized containing MeAVPI-linker-IPVMeA (forward-reverse) and MeAVPI-linker-MeAVPI (forward-forward) sequence, which incorporated linkers with varying degrees of flexibility. We hypothesized that the forward-forward divalent mimetics would have decreased activity compared to the peptides synthesized in a forward-reverse fashion. Lastly, information gathered from structure activity relationship (SAR) studies have shown that substituting the lysine (P2) and isoleucine residues (P4) in the AVPI protein can create more potent inducers of apoptosis than its native AVPI sequence. As one of the most potent Smac mimetic that has been previously made known contains an alkyne bridge at P2 and a large hydrophobic moiety at P4, we hypothesized that similar Smac mimetics containing a propargyl glycine residue at P2 and a bulky hydrophobic moiety at P4 will be much more potent in inducing apoptosis.

Programmed cell death (apoptosis) is the most common mechanism of cell death in eukaryotes. The ability of cancer cells to evade and inhibit apoptosis has become a hallmark feature of cancer. This is accomplished through a family of proteins known as the inhibitor of apoptosis proteins (IAPs). X-Linked inhibitor of apoptosis protein (XIAP) is one of the best characterized IAPs. XIAP suppresses apoptosis by forming complexes with cysteine-aspartic proteases (caspase), through one of its baculovirus IAP repeat (BIR) domains. Its activity is endogenously antagonized by a second mitochondria derived activator of caspase (Smac). The anti-apoptotic behaviour of XIAP and the critical role it plays in the apoptotic program makes the Smac-XIAP interaction an important drug target. To this end, our laboratory is interested in synthesizing biologically related Smac mimetics which can induce apoptosis in a MDA-MB-231 cell line. Efforts have focused on (1) understanding BIR domain binding sites which allow for this interaction, and (2) the design and synthesis of molecules which are much more effective at inducing apoptosis compared to other well known analogues. Through the synthesis and evaluation of various divalent Smac mimetics we have been able to support the hypothesis that the likely binding site on XIAP is the BIR3 domain. As well, through the synthesis of a library of novel compounds, as described in the thesis, we have been able to assess the nature of the linker which joins the two tetrapeptide units. In our effort to understand which domains Smac binds with, various divalent analogues were synthesized containing MeAVPI-linker-IPVMeA (forward-reverse) and MeAVPI-linker-MeAVPI (forward-forward) sequence, which incorporated linkers with varying degrees of flexibility. We hypothesized that the forward-forward divalent mimetics would have decreased activity compared to the peptides synthesized in a forward-reverse fashion. Lastly, information gathered from structure activity relationship (SAR) studies have shown that substituting the lysine (P2) and isoleucine residues (P4) in the AVPI protein can create more potent inducers of apoptosis than its native AVPI sequence. As one of the most potent Smac mimetic that has been previously made known contains an alkyne bridge at P2 and a large hydrophobic moiety at P4, we hypothesized that similar Smac mimetics containing a propargyl glycine residue at P2 and a bulky hydrophobic moiety at P4 will be much more potent in inducing apoptosis.

>Magister Scientiae - MSc / The therapeutic goal of cancer treatment is to trigger selective cell death in cancer cells. To eliminate cancerous cells effectively, the anti–cancer drugs must be targeted to the affected cells. However, anti–cancer drugs are often distributed non–specifically giving rise to systemic toxicities and other adverse effects. Cancer specific peptides are useful cancer targeting agents that can be used for the targeted delivery of anti-cancer drugs. Several cancer targeting peptides and some of their corresponding protein targets have been identified. Previous work investigated the specific binding of five of these peptides (p.C, p.H, p6.1, Frop-1 and p.L) conjugated to fluorescent nanoparticles (quantum dots) to a panel of human cell lines, which included four cancerous cell lines (Caco-2, HeLa, HT29 and HepG2) and one non-cancerous cell line (KMST-6). Flow cytometry showed that the p.L peptide preferentially bind to HT29 cells; suggesting that the expression levels of the target for the p.L peptide are higher in these cells. The objective of this study was to make use of target specific functionalised quantum dots (QDs) to deliver Second mitochondria-derived activator of caspases/ Direct AIP binding protein with low PI (Smac/DIABLO) to HT29 cells with the aim of enhancing the effects of pro-apoptotic drugs. Smac/DIABLO is a pro-apoptotic peptide that is able to interact with inhibitor of apoptosis proteins (IAPs), thereby inducing pro-apoptotic signalling. Methodology: CdSe/ZnS core-shell QDs were synthesised using the one-pot synthesis method. These QDs were characterised using photoluminescence (PL) spectroscopy, high resolution transmission electron microscopy (HR-TEM) and energy dispersive x-ray spectroscopy (EDS). The CdSe/ZnS core-shell QDs were solubilised with L-cysteine (Cys- QDs). The Cys-QDs were bi-conjugated to the p.L peptide and Smac peptide using 1-ethyl-3- (30-dimethylamino) carbodiimide (EDC) chemistry. Cultured HT29 cells were exposed to the 10 | P a g e QD peptide bi-conjugates and fluorescence microscopy was employed to assess targeting and internalisation. The cytotoxicity of the QD peptide bi-conjugates in combinatorial treatment with ceramide was evaluated using the WST-1 Cell Proliferation assay. A commercially available QD with similar chemistry was used to carry out a comparative study to relate the efficiency of the in-house synthesized QD.