Han, Fangyuan. / Thesis submitted in: November 2007. / Thesis (M.Phil.)--Chinese University of Hong Kong, 2008. / Includes bibliographical references (leaves 68-72). / Abstracts in English and Chinese. / Title Page --- p.I / Thesis Committee --- p.II / Acknowledgements --- p.III / Abstract --- p.IV / 摘要 --- p.V / Table of Contents --- p.1 / List of Figures --- p.4 / List of Tables --- p.6 / Chapter Chapter 1 --- Introduction --- p.7 / Chapter Chapter 2 --- Fourier Transform Spectroscopy --- p.10 / Chapter A. --- The Michelson Interferometer and the Interferogram --- p.10 / Chapter B. --- The Link between the Interferogram and the Spectrum: the Fourier Transform --- p.12 / Chapter C. --- "Resolution, Apodization and Spectral Folding" --- p.13 / Chapter D. --- Advantages and Disadvantages of FTIR Spectroscopy --- p.17 / Chapter E. --- Time-resolved FTIR Spectroscopy --- p.18 / Chapter (1) --- Time-resolved Rapid Scan Scheme --- p.18 / Chapter (2) --- Step-scan Scheme --- p.19 / Chapter F. --- Several Considerations in Step-scan Time-resolved Spectroscopy / Chapter Chapter 3 --- Molecular Fluorescence --- p.24 / Chapter A. --- Transitions Between Electronic States --- p.24 / Chapter B. --- Absorption and Vibrational Relaxation --- p.26 / Chapter C. --- Internal Conversion and Fluorescence --- p.26 / Chapter D. --- Intersystem Crossing and Phosphorescence --- p.27 / Chapter E. --- Fluorescence Lifetime and Quantum Yield --- p.29 / Chapter Chapter 4 --- Fourier Transform Spectroscopy of Zinc Phthalocyanine and Derivatives --- p.32 / Chapter A. --- Introduction --- p.32 / Chapter B. --- Apparatus --- p.35 / Chapter (1) --- VERTEX 70 FTIR Spectrometer --- p.35 / Chapter (2) --- Excitation Source --- p.38 / Chapter (3) --- Detectors and the Transient recorder --- p.38 / Chapter (4) --- Samples and Sample Cells --- p.39 / Chapter C. --- Experimental Setup --- p.40 / Chapter (1) --- Absorption Experiments --- p.40 / Chapter (2) --- Emission Experiments --- p.42 / Chapter D. --- Results and Discussion --- p.45 / Chapter (1) --- Absorption and Fluorescence Spectra --- p.45 / Chapter (2) --- Fluorescence Lifetimes and Quantum Yields --- p.51 / Chapter (3) --- Time-resolved Fluorescence Spectra --- p.54 / Chapter E. --- Some Experimental Details --- p.60 / Chapter (1) --- Choice of Windows for Regular Tests of the Instrument Performance --- p.60 / Chapter (2) --- Configurations of the Transient Recorder in OPUS --- p.61 / Chapter (3) --- Configurations of Detectors in OPUS --- p.61 / Chapter (4) --- The Standard Method of Extracting Time Slices --- p.62 / Chapter (5) --- Parameters that Easily Cause Problems --- p.63 / Chapter (6) --- Elimination of Background Noises --- p.64 / Chapter Chapter 5 --- Concluding Remarks --- p.66 / Reference --- p.68

Noninvasive glucose sensing has been studied widely. Near infrared (NIR) absorption spectroscopy and Raman scattering spectroscopy are proposed individually and combined as methods for glucose measurement in a three component sample matrix. In both techniques, the light transmits through human skin and a spectrum is collected. The research described in this thesis is like this. The use of individual NIR spectra data and individual Raman spectra data can give a good prediction ability of the partial least-squares (PLS) calibration model. Since the NIR and Raman spectroscopies have complementary nature of molecular vibrations, the research tried to prove the prediction ability of the PLS calibration model can be improved by combining NIR and Raman spectra data. Two approaches are investigated to ascertain the benefits of combining these spectral methods. First, NIR and Raman spectral data collected from a set of 60 samples concated and used to compute multivariate models based on PLS and net analyte signal (NAS) methods. The performance of models based on concated NIR-Raman spectra are compared to conventional models based on only NIR and only Raman spectra. The second strategy reported in this chapter is the simulated NIR and Raman spectra and computing PLS and NAS models by concating these simulated spectra. Spectral simulation permits systematic variations in noise levels. In both cases, various preprocessing methods are explored to find a suitable way to combine the different spectral types. The result from the real spectra data is that adding low signal-to-noise ratio (SNR) to high SNR spectra would make the calibration models worse. The result from the simulated spectra data is that with the same SNR and the same magnitude of the two spectra, the prediction ability of the calibration model can be improved.

Thesis (Ph. D.)--University of Chicago, Department of Chemistry and Department of Astronomy and Astrophysics, June 2001. / Includes bibliographical references. Also available on the Internet.

Thesis (M.E.E.)--University of Delaware, 2006. / Principal faculty advisor: James Kolodzey, Dept. of Electrical and Computer Engineering. Includes bibliographical references.

An intriguing mystery about tryptophan 2, 3-dioxygenase is its hydrogen peroxide-triggered enzyme reactivation from the resting ferric oxidation state to the catalytically active ferrous form. In this study, we found that such an odd Fe(III) reduction by an oxidant depends on the presence of L-Trp, which ultimately serves as the reductant for the enzyme. In the peroxide reaction with tryptophan 2, 3-dioxygenase, a previously unknown catalase-like activity was detected. A ferryl species (δ = 0.055 mm/s and ΔEQ = 1.755 mm/s) and a protein-based free radical (g = 2.0028 and 1.72 millitesla linewidth) were characterized by Mössbauer and EPR spectroscopy, respectively. This is the first compound ES-type of ferryl intermediate from a heme-based dioxygenase characterized by EPR and Mössbauer spectroscopy. Density functional theory calculations revealed the contribution of secondary ligand sphere to the spectroscopic properties of the ferryl species. A Trp-Trp dimer and a monooxygenated L-Trp were both observed as the enzyme reactivation by-products by mass spectrometry. Together, these results lead to the unraveling of an over 60-year old mystery of peroxide reactivation mechanism.

The fate and mobility of boric acid in the environment is largely controlled by adsorption reactions with soil organic matter and soil minerals to form surface complexes (Marzadori et al., 1991; Su and Suarez, 1995; Yermiyahu et al., 1995; Peak et al., 2002). The effects of humic acid (HA) and dissolved CO2 on boric acid adsorption on amorphous (am)-Al(OH)3 were investigated as their influence on sorption is potentially important. Although a model system was used in the studies, the findings should be generally useful to better understand the mobility and bioavailability of boric acid in the soil ecosystems.<p>In this dissertation, boric acid adsorption on pure am-Al(OH)3 and 5% w/w HA coated am-Al(OH)3 were investigated both as a function of pH (4.5 11) and initial boric acid concentration (0 4.5 mmol L-1). Batch adsorption isotherm experiments were also conducted with samples exposed to atmospheric CO2 and anaerobic (N2) conditions to examine the effects of dissolved CO2 on boric acid adsorption. Both the pH envelope and the adsorption isotherm experiments showed that the HA coating on am-Al(OH)3 and the presence of dissolved CO2 decreased boric acid adsorption. <p>Raman spectroscopy and boron (B) K-edge X-ray Absorption Near Edge Structure (XANES) spectroscopy were used to investigate the coordination of boric acid adsorbed at mineral/water interfaces. The Raman spectroscopy was less successful than expected as there were difficulties in identifying B bands in the 5% w/w HA coated am-Al(OH)3 samples.<p>The B K-edge XANES spectroscopy yielded better results. The XANES spectra of boric acid adsorption samples showed that both trigonal BO3 and tetrahedral BO4 coordinated complexes are present on the pure and HA coated mineral surfaces. At pH 7.0 and 9.2, the adsorption of boric acid on am-Al(OH)3 is predominantly inner-sphere trigonal complexes; with minor amounts of inner-sphere tetrahedral complexes. Both macroscopic and spectroscopic experiments revealed that the combination of HA coating on am-Al(OH)3 and dissolved CO2 decreased boric acid adsorption compared to adsorption on pure am-Al(OH)3.<p>The discoveries in this dissertation contribute significantly in understanding the effects of HA and dissolved CO2 has on boric acid adsorption in the environment. Since B speciation and the stability of am-Al(OH)3 mineral and HA changes with pH, the bioavailability of B is expected to change as well with pH. The adsorption on boric acid on am-Al(OH)3 and/or HA coated am-Al(OH)3 is expected to decrease the amount of boric acid available to plants. Therefore the nutrient management regimen will have to be modified for soils that are high in natural organic matter, carbonate and/or aluminum hydroxyl species.

The fate and mobility of boric acid in the environment is largely controlled by adsorption reactions with soil organic matter and soil minerals to form surface complexes (Marzadori et al., 1991; Su and Suarez, 1995; Yermiyahu et al., 1995; Peak et al., 2002). The effects of humic acid (HA) and dissolved CO2 on boric acid adsorption on amorphous (am)-Al(OH)3 were investigated as their influence on sorption is potentially important. Although a model system was used in the studies, the findings should be generally useful to better understand the mobility and bioavailability of boric acid in the soil ecosystems.<p>In this dissertation, boric acid adsorption on pure am-Al(OH)3 and 5% w/w HA coated am-Al(OH)3 were investigated both as a function of pH (4.5 11) and initial boric acid concentration (0 4.5 mmol L-1). Batch adsorption isotherm experiments were also conducted with samples exposed to atmospheric CO2 and anaerobic (N2) conditions to examine the effects of dissolved CO2 on boric acid adsorption. Both the pH envelope and the adsorption isotherm experiments showed that the HA coating on am-Al(OH)3 and the presence of dissolved CO2 decreased boric acid adsorption. <p>Raman spectroscopy and boron (B) K-edge X-ray Absorption Near Edge Structure (XANES) spectroscopy were used to investigate the coordination of boric acid adsorbed at mineral/water interfaces. The Raman spectroscopy was less successful than expected as there were difficulties in identifying B bands in the 5% w/w HA coated am-Al(OH)3 samples.<p>The B K-edge XANES spectroscopy yielded better results. The XANES spectra of boric acid adsorption samples showed that both trigonal BO3 and tetrahedral BO4 coordinated complexes are present on the pure and HA coated mineral surfaces. At pH 7.0 and 9.2, the adsorption of boric acid on am-Al(OH)3 is predominantly inner-sphere trigonal complexes; with minor amounts of inner-sphere tetrahedral complexes. Both macroscopic and spectroscopic experiments revealed that the combination of HA coating on am-Al(OH)3 and dissolved CO2 decreased boric acid adsorption compared to adsorption on pure am-Al(OH)3.<p>The discoveries in this dissertation contribute significantly in understanding the effects of HA and dissolved CO2 has on boric acid adsorption in the environment. Since B speciation and the stability of am-Al(OH)3 mineral and HA changes with pH, the bioavailability of B is expected to change as well with pH. The adsorption on boric acid on am-Al(OH)3 and/or HA coated am-Al(OH)3 is expected to decrease the amount of boric acid available to plants. Therefore the nutrient management regimen will have to be modified for soils that are high in natural organic matter, carbonate and/or aluminum hydroxyl species.

LCModel, which is performed on Linux, has been widely used for quantitative analysis of MRS. Its interface, LCMgui, converts MRS data of various formats to RAW file for LCModel analysis automatically. In this work, we had a web-based MRS analysis tool for GE MRS, GE MRS with Phase-Array and GE 2D-MRSI and improve the capability of web-based MRS analysis tool for GE 3D-MRSI, Siemens MRS/MRSI, and Philips MRS/MRSI. Meanwhile, T2 correction has been involved in the absolute quantification with LCModel. With the same echo-time, the different T2 value of each metabolite results in different degree of signal decay. In order to correct and make absolute concentrations more accurate, we exploit a factor to correct effect of different T2. Two groups of MRS data (TE = 35 and 272 ms) have been studied for comparison.

Microresonators are devices that confine light in small volumes through total internal reflection. Introducing an emissive species into a microresonator allows for resonance enhanced emission at frequencies where the spectrum of the emissive species overlaps with the resonant frequencies of the microresonator. Previous research has led to a good understanding of these phenomena in 1D and 2D microresonators, but many 3D microresonator geometries have not yet been investigated. This work details the successful creation and demonstration of a cubic polymeric optical microresonator.

Thesis (M.Ch.E.)--University of Delaware, 2009. / Principal faculty advisor: Jochen A. Lauterbach, Dept. of Chemical Engineering. Includes bibliographical references.