Amphibians are regarded as sensitive indicators of environmental change and are therefore excellent subjects for use in ecotoxicology. The Phongolo River floodplain is South Africa’s most diverse natural floodplain system and hosts more than 40 frog species. It is also a malaria endemic region and is subjected to active spraying with Dichlorodiphenyltrichloroethane (DDT) through means of indoor residual spraying over the summer months. The upper Phongolo River runs through agricultural landscape and is subjected to runoff from forest plantations, orchards and sugar cane plantations. In this study residue levels of 22 different organochlorine pesticides (OCPs) were analysed in selected amphibian species from in and around the Ndumo Nature Reserve coupled with 12 different biomarker response assays to determine environmental exposure levels and possible sublethal effects in amphibians from the lower Phongolo River floodplain. Seasonal change, direct influence of anthropogenic activity and the influence of species’ aquatic preference in habitat selection were all factors considered during this assessment. Stable Isotope analyses were performed on 11 different food web components In order to determine the food web structure pertaining to Xenopus muelleri (Müller's platanna). Samples were collected during both high and low flow seasons from inside and outside Ndumo Nature Reserve. Organochlorine pesticide bioaccumulation was analysed in whole frog samples using a GC-μECD. Results indicated significant seasonal variation in OCP levels and exposure composition. Significant differences between inside and outside sites were also noted. Dichlorodiphenyltrichloroethane in its different isomer forms and their metabolites along with the hexachlorocyclohexane (HCH) isomers was the two main contributing OCP groups detected. Total OCP levels from all sample sets ranged between 8.71 ng/g lipid and 21,399.03 ng/g lipid. An increase in OCP accumulation was observed for X. muelleri over a period of one year. Organochlorine pesticides are known to have neurotoxic effects causing imbalances in Na+, K+, and Ca+ ion exchange. Hyperactivity has been reported in Rana temporaria (European Common frog) tadpoles exposed to p,p-DDT concentrations above 110,000 ng/g lipid. Despite OCP levels measured in frogs from this study being lower than reported toxic levels, the biomarker response assays indicated definite oxidative stress responses correlating to OCP bioaccumulation, with other minor responses shown. Cellular energy allocation showed a shift in the main energy source type from proteins to lipids correlating to increased OCP bioaccumulation. A slight inhibition response was noted in the hepato-somatic index correlating to γ-HCH bioaccumulation. Stable isotope analyses indicated food web structure differences between inside and outside the reserve, with outside showing less clear distinction between trophic groups and nitrogen enrichment of primary producers. / MSc (Environmental Sciences), North-West University, Potchefstroom Campus, 2015

Amphibians are regarded as sensitive indicators of environmental change and are therefore excellent subjects for use in ecotoxicology. The Phongolo River floodplain is South Africa’s most diverse natural floodplain system and hosts more than 40 frog species. It is also a malaria endemic region and is subjected to active spraying with Dichlorodiphenyltrichloroethane (DDT) through means of indoor residual spraying over the summer months. The upper Phongolo River runs through agricultural landscape and is subjected to runoff from forest plantations, orchards and sugar cane plantations. In this study residue levels of 22 different organochlorine pesticides (OCPs) were analysed in selected amphibian species from in and around the Ndumo Nature Reserve coupled with 12 different biomarker response assays to determine environmental exposure levels and possible sublethal effects in amphibians from the lower Phongolo River floodplain. Seasonal change, direct influence of anthropogenic activity and the influence of species’ aquatic preference in habitat selection were all factors considered during this assessment. Stable Isotope analyses were performed on 11 different food web components In order to determine the food web structure pertaining to Xenopus muelleri (Müller's platanna). Samples were collected during both high and low flow seasons from inside and outside Ndumo Nature Reserve. Organochlorine pesticide bioaccumulation was analysed in whole frog samples using a GC-μECD. Results indicated significant seasonal variation in OCP levels and exposure composition. Significant differences between inside and outside sites were also noted. Dichlorodiphenyltrichloroethane in its different isomer forms and their metabolites along with the hexachlorocyclohexane (HCH) isomers was the two main contributing OCP groups detected. Total OCP levels from all sample sets ranged between 8.71 ng/g lipid and 21,399.03 ng/g lipid. An increase in OCP accumulation was observed for X. muelleri over a period of one year. Organochlorine pesticides are known to have neurotoxic effects causing imbalances in Na+, K+, and Ca+ ion exchange. Hyperactivity has been reported in Rana temporaria (European Common frog) tadpoles exposed to p,p-DDT concentrations above 110,000 ng/g lipid. Despite OCP levels measured in frogs from this study being lower than reported toxic levels, the biomarker response assays indicated definite oxidative stress responses correlating to OCP bioaccumulation, with other minor responses shown. Cellular energy allocation showed a shift in the main energy source type from proteins to lipids correlating to increased OCP bioaccumulation. A slight inhibition response was noted in the hepato-somatic index correlating to γ-HCH bioaccumulation. Stable isotope analyses indicated food web structure differences between inside and outside the reserve, with outside showing less clear distinction between trophic groups and nitrogen enrichment of primary producers. / MSc (Environmental Sciences), North-West University, Potchefstroom Campus, 2015

Food web structure is of underlying importance to ecological functions and processes. Whilst it is understood that a range of biotic and abiotic factors affect structure, relatively little is known of the role of biodiversity per se in structuring food webs. In this thesis I utilise novel multi-dimensional estimates of food web structure based on stable isotope ratios of nitrogen (δ15N) and carbon (δ13C) to quantify structural responses to changing community diversity. I additionally investigate methodological aspects of sample preparation and stable isotope quantifications of food chains. Using an arthropod prey-predator system, in chapter 2 I demonstrate that tissue selection and lipid extraction are important methodological procedures for deriving accurate δ15N and δ13C signatures. In chapter 3 I test the utility of δ15N to quantify food chain length, and δ13C to trace primary energy sources through to end consumers. Bayesian resampling of variance in sample means for plant and arthropod food chains produces robust isotopic estimates that match known food chain length well despite some error variance, and estimates of δ13C-range that trace trophic transfers. Chapter 4 represents a change in system from lab to field as I determine δ15N and δ13C signatures for plant and invertebrate species within three grassland communities representing a gradient of biodiversity. Quantifications of community bivariate isotopic space using isotopic metrics revealed that greater taxonomic richness increased both diversity of resource space exploited and overlap in resource space. These results therefore suggest that loss of diversity affected structure through altering relative patterns of niche partitioning in resource exploitation amongst community members. In chapter 5, I additionally find evidence that grassland management mediated changes in food web compartmental structure that were associated with differences in generalist invertebrate predator feeding habits. Taken together, these findings develop and demonstrate the utility of isotopic approaches to quantifying food web structure, and provide evidence of important mechanisms by which biodiversity affects food web structure. I conclude that the preservation of natural food web structure and trophic dynamics are further reasons for halting loss of biodiversity.

Nitrogen (N) is an essential element to plants for growth, maintenance and reproduction, however most N does not exist in a form that is biologically available to plants. In order to maximise the acquisition and retention of N, plants have evolved a variety of morphological and physiological adaptations and life history strategies, as well as the ability to respond plastically to changes in resource availability in ecological time. Determining the ecophysiological responses of plants to changes in root N availability is crucial to further understanding of the mechanisms underlying competitive interactions between plants, and between plants and other organisms, that ultimately contribute to community structure and ecosystem functioning. Carnivorous plants are ideal systems for investigating ecophysiological responses to N availability as:- (i) they share a unique adaptation for obtaining supplemental N from captured prey, therefore ecological stoichiometry and energetic cost/benefit models may be explored; (ii) the trait of botanical carnivory is widely considered to have independently co-evolved as a response to N-deficient, sunny and wet environments, therefore resource allocation trade-offs between plant investment in N and carbon (C) acquisition may be observed, and (iii) they are extremely sensitive to changes in root N availability in ecological time. In this research, the carnivorous plant Drosera rotundifolia (round-leaved sundew) was used to address several unanswered ecophysiological and evolutionary questions relating to patterns and processes of prey capture and the N nutrition of carnivorous plants. Furthermore, the potential for reducing uncertainty in the calculation of plant reliance on carnivory using a δ15N natural abundance multi-level linear mixing model was explored. A combined approach of in-situ and ex-situ studies was employed, using co-occurring non-carnivorous plants or carnivorous plant species with differing evolutionary lineages or prey capture mechanisms respectively to provide context. Results show that the adaptations of carnivory, high reproductive investment and a relatively short life span enable Drosera rotundifolia to survive and thrive in an extreme, N deficient environment. Phenotypically plastic responses by the plant to light and root N availability provide evidence of resource allocation trade-offs between investment in carnivory for N acquisition and in photosynthesis for C acquisition. Plants invested less heavily in prey capture (measured as the stickiness of leaf mucilage) as N availability increased or light availability decreased. These results show that the energetic costs associated with carnivory are avoided by the plant when less costly sources of N are available for uptake and that the production of carbon-rich mucilage is only made under nutrient-limited and well-lit conditions. Results obtained from the comparison of captured insect prey with background invertebrates of potential prey indicate that Drosera rotundifolia is a dietary generalist, where the quantity of prey captured per plant is positively correlated with leaf stickiness and total leaf area. Plant reliance on prey-derived N decreased with increasing root N availability, providing evidence that carnivory is only of net benefit to the plant in N-deficient and well-lit environments, as the photosynthetic costs of investment in the trait are not exceeded by the energetic gain from prey N uptake in shady or dry habitats. A more accurate and precise method for calculating plant reliance on botanical carnivory is presented which incorporates the insect diet of the plant. This method has wider significance for reducing uncertainty in the calculation of relative source contributions to a mixture for most natural abundance applications using a multi-level linear mixing model. To conclude, results from this research further understanding of the ecophysiological mechanisms underlying plant responses to changes in resource availability and the selective pressures driving the evolution of plant adaptations. These results therefore assist with predicting how plants and plant communities may respond to sustained N deposition inputs and future environmental scenarios.

A escassez de trabalhos acerca dos impactos causados por mosaicos agrícolas sobre a biodiversidade dificulta a criação de estratégias de conservação, havendo necessidade de informações acerca da ecologia e comportamento de espécies da fauna. Nesse contexto o presente estudo objetivou: 1) determinar a composição e estrutura de assembleias de mamíferos de médio e grande em uma paisagem agrícola de Mata Atlântica; 2) avaliar o padrão de alimentação da onça-parda (Puma concolor) por meio da análise de isótopos estáveis (SIA) em dois mosaicos agrícolas; 3) analisar por meio da diversidade funcional (FD) assembleias de mamíferos em remanescentes florestais distribuídos nas principais regiões biogeográficas da Mata Atlântica, e identificar limiares ecológicos para a conservação. Para o inventário, foram selecionados oito remanescentes florestais na Região Metropolitana de Campinas (RMC), São Paulo. Os dados foram coletados por busca ativa (visualizações e vestígios), resultando no registro de 34 espécies de mamíferos, sendo 27 de médio e grande porte, quatro de pequeno porte, e três exóticas. Sete espécies se encontram ameaçadas de extinção, com registros inéditos de Myrmecophaga tridactyla e Lycalopex gymnocercus. A riqueza e a composição de espécies registradas apontaram a RMC como importante para a conservação da mastofauna. Foram analisados isotopicamente (carbono e nitrogênio) pelos de onças-pardas, obtidos a partir de amostras fecais coletadas por busca ativa em remanescentes florestais inseridos em paisagens agrícolas no interior do estado de São Paulo. Houve maior consumo de presas C3 (~47% dos indivíduos) na área com maior proporção de vegetação nativa, e maior consumo de presas C4 (~40% dos indivíduos) para a área onde é predominante a matriz agrícola. Foi constatado o consumo de presas com dieta baseada em itens alimentares dos remanescentes e da matriz agrícola, sugerindo alta plasticidade comportamental das onças-pardas e de suas presas ocupando áreas fortemente impactadas pelo homem. A ferramenta isotópica apresentou informações pioneiras sobre ecologia trófica, podendo contribuir na elaboração estratégias de conservação em áreas antropizadas. Para a análise da FD e identificação dos limiares foi utilizado um banco de dados composto por 49 assembleias de mamíferos, criado a partir de dados primários e secundários de inventários, sendo selecionadas 38 características das espécies para o cálculo. A existência de limiares foi verificada utilizando a função \"segmented\", disponível no programa R. A FD apresentou-se diferente para assembleias com o mesma riqueza de espécies, indicando que filtros ambientais podem influenciar nos valores. O incremento gradual na FD devido ao aumento da área dos remanescentes mostrou uma relação positiva, possivelmente ligada a maior complexidade e heterogeneidade de áreas maiores. Foram identificados dois limiares (52 e 1244 ha), criando três situações funcionalmente distintas, tanto críticas quanto mais estáveis, permitindo definir e propor formas de ação específicas. Assembleias presentes entre os limiares apresentaram incremento funcional significativo entre FD e o aumento da área dos remanescentes, e ações visando à restauração e melhorias na configuração da paisagem devem ser incentivadas. Conclui-se, portanto, que tanto a SIA quanto a FD, podem ser consideradas importantes ferramentas para delinear estratégias e ações em prol da conservação da mastofauna. / The scarcity of studies regarding the impacts of agricultural mosaics on biodiversity hinders the creation of conservation strategies and a need for information concerning the ecology and behavior of wildlife species. In this context, the present study aimed to: 1) determine the composition and structure of mammal assemblages of medium and large sized in an agricultural landscape at Atlantic Forest; 2) evaluate the puma (Puma concolor) feeding pattern through analysis of stable isotopes (SIA) in two agricultural mosaics; 3) analyze mammal assemblages by functional diversity (FD) in forest remnants distributed in major biogeographic regions of the Atlantic Forest, and identify ecological thresholds for conservation. For mammal\'s inventory, eight forest remnants were selected in Campinas Metropolitan Region (RMC), São Paulo state. Data were collected through active search (visualizations and tracks), resulting in the record of 34 mammal species, 27 medium and large size, four of small size, and three exotic. Seven species are threatened with extinction, with novel records of Myrmecophaga tridactyla and Lycalopex gymnocercus for this region. The species richness and composition pointed RMC as an important area for mammal\'s conservation. Carbon and nitrogen stable isotopes were analyzed in pumas hair, obtained from fecal samples collected by active search in forest remnants embedded in agricultural landscapes in São Paulo state. There was a higher consumption of C3 prey (~ 47% of individuals) in the area with the highest proportion of forest coverage, and greater consumption of C4 prey (~ 40% of individuals) where the agricultural matrix was predominant. Was observed the consumption of prey with diet based on food items from both forest remnants and agricultural matrix, suggesting high behavioral plasticity of puma\'s and their prey\'s occupying areas heavily impacted by man. Stable isotopes contributed with pioneer information on trophic ecology, aiming the development of new conservation strategies in anthropogenic areas. A database consisting of 49 mammal\'s assemblages, created from primary and secondary data of inventories, was used for FD analysis and threshold\'s identification. 38 specie\'s traits were selected for FD calculation. The thresholds existence was verified using the \"segmented\" function, available on R program. FD was different between mammal assemblages with the same species richness, indicating that environmental filters may affect its values. The gradual increment in FD, due to the increase in forest remnants area, presented a positive relationship, possibly linked to the increased complexity and heterogeneity of large areas. Two thresholds (52 and 1244 ha) were identified, creating three functionally distinct situations, both critical as more stable, allowing to define and propose for each one specific ways of action. Mammal\'s assemblages found between the thresholds showed significant functional increment considering the relationship between FD and forest remnants area, and actions aiming biological restoration and improvements in the landscape configuration should be encouraged. It was concluded, therefore, that both SIA as the FD can be considered important tools to outline strategies and actions for mammal\'s conservation.

The spread of surface coal mining has resulted in loss of forests in the Appalachian region. The Forestry Reclamation Approach (FRA) was developed to provide guidance for restoring forests on reclaimed mined land. This study hypothesizes that the FRA will result in larger magnitude of sediment accumulation rates in reclaimed mine sites compared to those reclaimed using grassland reclamation. Three sediment cores and six trenches were sampled within four reclaimed mined and three previously logged sites in eastern Kentucky. Samples were processed for radionuclides, grain-size, stable isotopes (δ13C), and POC. LIDAR data were used to identify valley fills, while historical aerial photography was used to identify changes in vegetative cover from 1994 to 2016. Radionuclide dating was used to determine sediment accumulation rates over the previous 100 years. Results from logged sites are inconclusive. δ13C data for all sites fall within the range expected for forested landscapes (C3), and do not show any transitions from grassland to forests. POC data indicates that inventories and fluxes were the same for mined and logged sites. Sediment accumulation rates for reclaimed mined lands show elevated values after the implementation of the FRA, compared to grassland reclamation, thus supporting the hypothesis for previously mined sites.

This thesis deals with a medieval material from Rounala in Karesuando parish, Norrbotten county, Lapland. The aim is to reconstruct the diet and mobility patterns. It is through carbon, nitrogen and sulphur stable isotopes and radiocarbon that both pastoralist traits and whether which part Christianity played in the burial traditions of these human remains is being studied. Another aim is to discuss the repatriation issue as these remains are subjected to. The results mainly show that all individuals had a mixed diet and no pastoral way of living has been established. Furthermore, individual 3 is suffering from pathological changes. With radiocarbon dates ranging from 1300 to 1720 AD, two groups can be distinguished as to whom had been buried before and after the construction of the church. And repatriation is being discussed as an issue to who have ownership over ancient remains.

Moose populations in southern Manitoba have declined. Although the primary cause of this decline is unclear, wolf predation is considered a main contributor because wolves have limited moose populations elsewhere. To help understand the role of wolf predation in limiting moose populations we reconstructed the proportional diet of wolves using stable isotope analysis and a Bayesian stable isotope mixing model (MixSIAR). We tested the assumptions of MixSIAR by running sensitivity analyses on trophic discrimination and prior information. We observed differences in wolf diet in areas where moose and deer coexist and are spatially separated, with changes both seasonally and annually. Our results suggest white-tailed deer were preyed on during winter, even in areas where deer are locally rare, suggesting prey catchability is more important than local prey density. Seasonal changes in prey accessibility strongly affect wolf predation rates, and manipulating alternative prey populations could mitigate predation impacts on moose. / October 2015

Coral reefs are highly complex and also highly threatened ecosystems. Population growth and the unsustainable use of coral reefs have resulted in 55% of the world’s reefs being considered degraded. Fishing, the primary ‘local’ threat on most reefs, has altered the composition of most reef communities. As a result, very few pristine coral reefs remain. Typically, coral reef research is done via underwater visual censuses, providing abundance estimates but no indication of trophic interactions, therefore we know relatively little about the structure of intact reef food webs. Understanding how human activities affect trophic structure and feeding interactions among resident reef species may be important for coral reef conservation. Here, I apply stable isotope analysis to coral reef piscivorous fishes from Kiritimati (Republic of Kiribati), the world’s largest atoll. I examine dietary niche metrics of five focal species (Cephalopholis argus, Cephalopholis urodeta, Aphareus furca, Lutjanus bohar, and Lutjanus fulvus) and of the piscivore functional group as a whole, across an anthropogenic disturbance gradient that results from the atoll’s heavily skewed geographic population distribution. Using bootstrapped stable carbon (δ13C) and nitrogen (δ15N) isotope values, controlled for body size effects and analysed with Bayesian methods using the SIAR (Stable Isotope Analysis in R) program, I provide evidence of isotopic niche differentiation in C. argus and L. fulvus relative to other sampled species in terms of niche width metrics and mean δ13C and δ15N values. I also analyse the effect of fishing pressure at an individual level (controlling for body size effects on stable isotope signatures for each species), population level (accounting for observed differences in body size distributions across the fishing pressure gradient for each species), and the ‘community’ level (accounting for body size and relative abundance differences of the five piscivores across the fishing pressure gradient). These metrics reveal species-specific changes in niche metrics of three of the focal species at the individual level: C. urodeta, showed regionally distinct niche width metrics but no apparent correlation with fishing pressure, while A. furca and L. bohar, both had broader niche width metrics in heavily fished areas. No significant effect of fishing pressure was found at population or community levels. This study provides the first evidence using stable isotopes that fishing can alter the diets of coral reef fishes. The mechanism by which it can do so, while not entirely clear, would most likely be by expanding a given species’ dietary diversity by either forcing it to switch to non-preferred prey items or changing the diet and/or body size of its prey items, both of which would reflect significant ecological changes within a community. This thesis provides evidence of the utility of stable isotope analyses in answering important ecological questions in coral reef food webs, and reveals that fishing can affect reef communities at the most fundamental level of trophic interactions. / Graduate / 0329 / burrilladrian@gmail.com

abstract: Niche variation among sexes and life stages within a population has been documented in many species, yet few studies have investigated niche variation within demographic groups or across ecological contexts. We examined the extent to which pregnant California sea lions (Zalophus californianus) at each of three breeding colonies target alternative prey resources and habitats. The three colonies are distributed across distinct regions of the Gulf of California, Mexico and have divergent population dynamics. We compared the nature of niche variation among colonies and investigated the fitness consequences of different foraging strategies within each colony. We analyzed the δ13C and δ15N values from fur collected from 206 suckling pups to characterize relative maternal foraging locations (δ13C) and trophic levels (δ15N) during the metabolically demanding late stages of gestation and lactation that occur simultaneously in California sea lions. The δ13C and δ15N values were regressed against pup body condition index values to compare the relative individual-level fitness benefits of different maternal foraging strategies. We found that the nature and extent of niche variation differed among colonies. Niche variation was most pronounced at the two largest colonies that appear to experience the highest levels of intraspecific competition and the variation was consistent with habitat features. One colony (Granito) displayed two distinct foraging groups with indistinguishable median pup body condition values, whereas the second (San Jorge) exhibited continuous niche variation and pup body condition varied in relation to maternal foraging location and trophic level, suggesting disparities among alternative foraging strategies. For the smallest colony (Los Islotes), females occupy similar niches with a few outliers. Body condition values of pups at this colony were most variable, but did not vary with maternal foraging strategy. Our results provide evidence for intrapopulation niche variation among demographically similar individuals during a period of high metabolic stress and reproductive importance. This work suggests possible fitness benefits conferred by alternative foraging strategies, and calls into question the common assumption that members of a population are ecologically equivalent. Future research aimed at understanding animal foraging strategies should consider the nature and extent of niche variation in the context of local ecological conditions. / Dissertation/Thesis / M.S. Biology 2013