Résumé confidentiel / Résumé confidentiel

Yaku'amide A shows a unique inhibitory profile against a series of 39 human cancer cell lines (JFCR39). In our efforts to synthesize yaku'amide A, we have optimized our regioselective base-free aminohydroxylation method with a series of nitrogen sources, developed a chiral reagent-mediated aminohydroxylation strategy and chemoselective deprotections of the resulting aminohydroxylation product, and explored a stereospecific E2 dehydration and O-N acyl transfer sequence. In addition, we have prepared the right-hand tetrapeptide and the NTA subunit. For our bulky α,β-dehydroamino acids project, we have developed strategies to incorporate α,β-dehydroamino acids such as ΔVal and ΔEnv into small synthetic peptides via Solid Phase Peptide Synthesis (SPPS). We have also prepared two analogues of a monomeric helical peptide with 13 residues.

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This thesis describes stereospecific fluorination reactions, and addresses the synthesis of fluorosugars. In Chapter 1, the influence of fluorine on the physical properties of organic molecules, as well as its stereoelectronic effects, are introduced. Furthermore, an overview of nucleophilic and electrophilic fluorination reactions is given. Chapter 2 describes the dehydroxyfluorination of allylic alcohol diastereoisomers 155a and 155b, which can proceed either by direct or allylic fluorination. The regio- and stereo- selectivities were also assessed. Chapter 3 outlines the synthesis of the novel trifluoro D-glucose analogue 193 and trifluoro D-altrose analogue 216. The transport of these hexose analogues across the red blood cell membranes was then explored, to investigate the influence of polarity versus hydrogen bonding ability in carbohydrate-protein interactions. Chapter 4 describes the development and optimisation of Bio’s methodology, to promote stereospecific dehydroxyfluorination of benzylic alcohols (R)-213 and (R)-227 by addition of TMS-amine additives 226 and 229. And finally Chapter 5 reports the experimental procedures as well as the characterisation and the crystallographic data of the molecules prepared in this thesis.

Investigation of the catalytic formation, reactivity and synthetic scope of sp³-gem-organodimetallic palladio(II)/main group metal (main group metal = tributylstannyl, dialkylalumino) alkane species has been carried out. Insight was expanded regarding the inter- and intramolecular reactivity of vinylmetallic reagents in presence of transition metal catalysts. New Pd-catalysed methodologies for carbon-carbon bond formation were developed, such as cyclopropanation of strained olefins, as well as tandem vinylalane arylation/1,2-methyl transfer and 1,2-diarylation. On the one hand, geminal π-allylpalladio(II)/tributylstannylalkane intermediates are produced by oxidative addition of Pd(0) catalysts to α-tributylstannylpropenyl acetate derivatives. They adopt ambiphilic behaviour depending on the transition metal pre-catalyst, presence or absence of phosphine ligands, and reaction temperature. In presence of tetrakis(triphenylphosphine)palladium(0) with additional bidentate ligand, the carbenoid reactivity of these gem-organobismetallic species is exposed by reaction with dimethyl malonate. Deuterium-labeling studies demonstrated sequential functionalisation of the C-Sn and C-Pd bonds. Conversely, phosphine-free catalyst bis(dibenzylideneacetone)palladium(0) uncovers metal-carbene reactivity, and dimerisation and strained alkene cyclopropanation reactions are observed. The nature of the palladium catalyst controls the reactivity of the carbenoid species. Finally, bis(cyclooctadienerhodium(I) chloride) catalytically activates the alkenylstannane moiety, leaving the allylic acetate leaving group available for further transformations. On the other hand, gem-disubstituted trifluoromethanesulfonyloxy- and iodopalladio(II)/ dialkylaluminoneopentane species are generated by intramolecular migratory insertion of 2,2-disubstituted-1-butenyldialkylalanes with σ-arylpalladium(II) triflate and iodide intermediates. Using excess Lewis-basic 1,4-diazabicyclo[2.2.2]octane, electron-rich tris(para-methoxyphenyl)phosphine ligand and acetonitrile as solvent, tandem arylation/1,2-alkyl migration from aluminum to carbon affords 7-substituted-1-ethyl-1-methylindanes containing an all-carbon quaternary stereogenic centre in good yields. This reaction is tolerant of 6-aryl methyl ethers, thioethers and trimethylsilanes. Deuterium labeling established that protiodealumination of the key neopentyl(methyl)aluminum triflate intermediate is caused by the acetonitrile solvent. The organodimetallic species in that study were shown to be configurationally stable, hence the stereospecificity of the process that proceeds via carbopalladation, transmetalation and reductive elimination of an alkylpalladium(II) intermediate. When applied to 1-naphthyl triflate-tethered vinylalanes, the same reaction conditions mediate stereospecific 1,2-diarylation, leading to 2,3,3a,4-tetrahydro-1H-cyclopenta[def]phenanthrenes in excellent yields. The influence of DABCO, tether length and solvent polarity was studied. Selective tandem arylation/1,2-methyl migration could also be achieved in non-polar solvent in absence of Lewis base. While steric properties took precedence over electronic considerations when inducing product selection, preagostic C-H···Pd interactions were postulated to facilitate 1,3-metal migration in the production of 1H-cyclopenta[def]phenanthrene derivatives.

Investigation of the catalytic formation, reactivity and synthetic scope of sp³-gem-organodimetallic palladio(II)/main group metal (main group metal = tributylstannyl, dialkylalumino) alkane species has been carried out. Insight was expanded regarding the inter- and intramolecular reactivity of vinylmetallic reagents in presence of transition metal catalysts. New Pd-catalysed methodologies for carbon-carbon bond formation were developed, such as cyclopropanation of strained olefins, as well as tandem vinylalane arylation/1,2-methyl transfer and 1,2-diarylation. On the one hand, geminal π-allylpalladio(II)/tributylstannylalkane intermediates are produced by oxidative addition of Pd(0) catalysts to α-tributylstannylpropenyl acetate derivatives. They adopt ambiphilic behaviour depending on the transition metal pre-catalyst, presence or absence of phosphine ligands, and reaction temperature. In presence of tetrakis(triphenylphosphine)palladium(0) with additional bidentate ligand, the carbenoid reactivity of these gem-organobismetallic species is exposed by reaction with dimethyl malonate. Deuterium-labeling studies demonstrated sequential functionalisation of the C-Sn and C-Pd bonds. Conversely, phosphine-free catalyst bis(dibenzylideneacetone)palladium(0) uncovers metal-carbene reactivity, and dimerisation and strained alkene cyclopropanation reactions are observed. The nature of the palladium catalyst controls the reactivity of the carbenoid species. Finally, bis(cyclooctadienerhodium(I) chloride) catalytically activates the alkenylstannane moiety, leaving the allylic acetate leaving group available for further transformations. On the other hand, gem-disubstituted trifluoromethanesulfonyloxy- and iodopalladio(II)/ dialkylaluminoneopentane species are generated by intramolecular migratory insertion of 2,2-disubstituted-1-butenyldialkylalanes with σ-arylpalladium(II) triflate and iodide intermediates. Using excess Lewis-basic 1,4-diazabicyclo[2.2.2]octane, electron-rich tris(para-methoxyphenyl)phosphine ligand and acetonitrile as solvent, tandem arylation/1,2-alkyl migration from aluminum to carbon affords 7-substituted-1-ethyl-1-methylindanes containing an all-carbon quaternary stereogenic centre in good yields. This reaction is tolerant of 6-aryl methyl ethers, thioethers and trimethylsilanes. Deuterium labeling established that protiodealumination of the key neopentyl(methyl)aluminum triflate intermediate is caused by the acetonitrile solvent. The organodimetallic species in that study were shown to be configurationally stable, hence the stereospecificity of the process that proceeds via carbopalladation, transmetalation and reductive elimination of an alkylpalladium(II) intermediate. When applied to 1-naphthyl triflate-tethered vinylalanes, the same reaction conditions mediate stereospecific 1,2-diarylation, leading to 2,3,3a,4-tetrahydro-1H-cyclopenta[def]phenanthrenes in excellent yields. The influence of DABCO, tether length and solvent polarity was studied. Selective tandem arylation/1,2-methyl migration could also be achieved in non-polar solvent in absence of Lewis base. While steric properties took precedence over electronic considerations when inducing product selection, preagostic C-H···Pd interactions were postulated to facilitate 1,3-metal migration in the production of 1H-cyclopenta[def]phenanthrene derivatives.

La première partie de ce manuscrit traite de la synthèse de phosphine-boranes P-stéréogènes énantioenrichis à partir d’un précurseur développé par notre laboratoire : le H-phénylphosphinate d’adamantyle. Grâce au développement d’une séquence monotope, une variété d’oxydes de phosphine P-stéréogènes de haute pureté optique a pu être synthétisée. Ces composés comportant une attache hydroxyle ont ensuite été réduits de façon stéréospécifique en présence de borane pour générer les précurseurs phosphine-boranes correspondants. Lors de cette étape de réduction, l’importance de la fonction hydroxyle a été mise en évidence, et un mécanisme basé sur la formation d’une espèce phosphaboracyclique intermédiaire a été proposé, sur la base de l’isolement d’intermédiaires réactionnels O-borés. Les trois rôles du borane (activation, réduction, protection de la phosphine) ont été clairement identifiés dans ce processus. Dans un second temps, nous avons pu mettre à profit la rétroaddition du groupement hydroxyalkyle en milieu basique lors de l’alkylation stéréospécifique chimiodivergente de phosphure-boranes masqués. Cette rétroaddition a permis de contourner l’instabilité chimique et configurationnelle des phosphures générés in situ, permettant l’accès à des phosphine-boranes fonctionnalisés de manière énantiospécifique. Ces ligands P,N ont été ensuite complexés au palladium et les complexes ont pu être testés comme catalyseurs de couplages C-C énantiosélectifs. Lors de ces couplages, l’angle de morsure du ligand s’est révélé crucial pour la réactivité du système catalytique. / The first part of this manuscript deals with the synthesis of enantioenriched P-stereogenic phosphine-boranes from a chiral precursor developed in our laboratory: H-adamantyl phenylphosphinate. Through the design of a one-pot procedure, the synthesis of a wide array of highly enantioenriched phosphine oxides has been achieved. These hydroxy-functionalised compounds were reduced stereospecifically under borane conditions to yield the corresponding hydroxyalkylphosphine-boranes. During the study of this reaction, the importance of hydroxy group has been highlighted, and a mechanism relying on the formation of transient phosphaboracyclic intermediate could be proposed, on the basis of kinetic observation and isolation of O-borylated intermediates. In this transformation, borane seems to display three roles: activating, reducing and protecting agent. Next, we were able to take advantage of the retroaddition of hydroxyalkyl moiety under basic conditions to develop a new approach for the stereospecific and chemodivergent alkylation of masked secondary phosphine-boranes. This unusual reactivity allowed us to circumvent the relative chemical and configurational instability of such in situ generated phosphido-boranes intermediate, thus enabling the stereospecific synthesis of functionalised tertiary phosphine-boranes. These P-N ligands have been complexed to palladium, and the catalytic activity of these complexes in enantioselective C-C couplings has been studied. During the catalytic process, it appears that the ligand bite angle plays an important role in the catalyst activity.

Les fructose-1,6-bisphosphate aldolases (FBPA) sont des enzymes glycolytiques (EC 4.1.2.13) qui catalysent la transformation réversible du fructose-1,6-bisphosphate (FBP) en deux trioses-phosphates, le glycéraldéhyde-3-phosphate (G3P) et le dihydroxyacétone phosphate (DHAP). Il existe deux classes de FBPA qui diffèrent au niveau de leur mécanisme catalytique. Les classes I passent par la formation d’un intermédiaire covalent de type iminium alors que les classes II, métallodépendantes, utilisent généralement un zinc catalytique. Contrairement au mécanisme des classes I qui a été très étudié, de nombreuses interrogations subsistent au sujet de celui des classes II. Nous avons donc entrepris une analyse détaillée de leur mécanisme réactionnel en nous basant principalement sur la résolution de structures cristallographiques. De nombreux complexes à haute résolution furent obtenus et ont permis de détailler le rôle de plusieurs résidus du site actif de l’enzyme. Nous avons ainsi corrigé l’identification du résidu responsable de l’abstraction du proton de l’O4 du FBP, une étape cruciale du mécanisme. Ce rôle, faussement attribué à l’Asp82 (chez Helicobacter pylori), est en fait rempli par l’His180, un des résidus coordonant le zinc. L’Asp82 n’en demeure pas moins essentiel car il oriente, active et stabilise les substrats. Enfin, notre étude met en évidence le caractère dynamique de notre enzyme dont la catalyse nécessite la relocalisation du zinc et de nombreux résidus. La dynamique de la protéine ne permet pas d’étudier tous les aspects du mécanisme uniquement par l’approche cristallographique. En particulier, le résidu effectuant le transfert stéréospécifique du proton pro(S) sur le carbone 3 (C3) du DHAP est situé sur une boucle qui n’est visible dans aucune de nos structures. Nous avons donc développé un protocole de dynamique moléculaire afin d’étudier sa dynamique. Validé par l’étude d’inhibiteurs de la classe I, l’application de notre protocole aux FBPA de classe II a confirmé l’identification du résidu responsable de cette abstraction chez Escherichia coli (Glu182) mais pointe vers un résidu diffèrent chez H. pylori (Glu149 au lieu de Glu142). Nos validations expérimentales confirment ces observations et seront consolidées dans le futur. Les FBPA de classe II sont absentes du protéome humain mais sont retrouvées chez de nombreux pathogènes, pouvant même s'y révéler essentielles. Elles apparaissent donc comme étant une cible idéale pour le développement de nouveaux agents anti-microbiens. L’obtention de nouveaux analogues des substrats pour ces enzymes a donc un double intérêt, obtenir de nouveaux outils d’étude du mécanisme mais aussi développer des molécules à visée pharmacologique. En collaboration avec un groupe de chimistes, nous avons optimisé le seul inhibiteur connu des FBPA de classe II. Les composés obtenus, à la fois plus spécifiques et plus puissants, permettent d’envisager une utilisation pharmacologique. En somme, c’est par l’utilisation de techniques complémentaires que de nouveaux détails moléculaires de la catalyse des FBPA de classe II ont pu être étudiés. Ces techniques permettront d’approfondir la compréhension fine du mécanisme catalytique de l’enzyme et offrent aussi de nouvelles perspectives thérapeutiques. / Fructose-1,6-bisphosphate aldolases (FBPA) are glycolytic enzymes (EC 4.1.2.13) that catalyze the reversible cleavage of fructose-1,6-bisphosphate (FBP) into the triose phosphates, glyceraldehyde-3-phosphate (G3P) and dihydroxyacetone phosphate (DHAP). There are two classes of FBPAs that differ at the level of their mechanism. Class I FBPAs form a covalent iminium intermediate whereas class II FBPAs, being metalloenzymes, generally use a catalytic zinc in their reaction mechanism. In contrast to the mechanism of the class I FBPAs, which has been thoroughly studied, there are several unresolved inquiries as to the mechanism of class II FBPAs. We have therefore pursued a detailed analysis of the reaction mechanism using as a primary tool the elucidation of crystallographic structures. Several high resolution complexes have been resolved and have provided critical evidence to help us suggest the implication and role of several key residues in the active site. Consequently, we have correctly identified the residue which is responsible for the abstraction of the O4 proton from FBP, a vital step in the reaction mechanism. The residue responsible for this abstraction, which had incorrectly been assigned to Asp82 (in Helicobacter pylori), has been appropriately consigned to His180, a residue which is involved in coordinating the zinc molecule. Nevertheless, Asp82 remains an important residue as it orients, activates and stabilizes substrates. Finally, our study brings to evidence the dynamic character of our enzyme in which catalysis entails the relocalization of the catalytic zinc and several residues. The complexity of this reaction, notably one of the proton exchanges in the mechanism, could not be resolved solely by crystallographic means. In fact, the residue responsible for the stereospecific transfer of the pro(S) proton on carbon 3 (C3) of DHAP is situated on a loop that was not resolved in any of our structures. We therefore developed a molecular dynamics approach to study this intricate movement. After preliminary validation by inhibitor studies with class I FBPAs, the protocol was applied to class II FBPAs and several remarkable observations emerged: the residue responsible for this abstraction in Escherichia coli is Glu182 whereas a different residue, Glu149 (instead of Glu142) appears to assume this role in H. pylori. Our preliminary validations have confirmed this observation and shall be further consolidated in the future. Class II FBP aldolases, although absent from the human proteome, are prevalently found in several pathogens, and have further been found to be essential to a number of these organisms. As such, they are ideal targets for the development of novel anti-microbial agents. Developing new analogues of the cognate substrates of these enzymes is therefore not only advantageous for mechanistic studies, but has endless pharmacological potential. In the context of a collaborative effort involving a group of chemists, a compound that initially had an inhibition constant in the millimolar range was optimized and produced a series of compounds that inhibit in the nanomolar range.

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