Chen Lei. / "February 2004." / Thesis (Ph.D.)--Chinese University of Hong Kong, 2004. / Includes bibliographical references (p. 124-161). / Electronic reproduction. Hong Kong : Chinese University of Hong Kong, [2012] System requirements: Adobe Acrobat Reader. Available via World Wide Web. / Mode of access: World Wide Web. / Abstracts in English and Chinese.

The repair of DNA double-strand breaks (DSBs) is required for the survival of all organisms. In bacteria, DNA DSBs can occur during normal housekeeping processes such as DNA replication or by exogenous damage due to chemicals or radiation. DSBs will compromise the integrity of the genome if left un-repaired, and can be fatal to an organism. Repair of DSBs by homologous recombination (HR) replicates missing chromosomal regions before joining of the separated DNA ends. In Escherichia coli the HR repair steps are; pre-synapsis, synapsis and post-synapsis. In the pre-synaptic stage a DSB is processed into a 3′ single-strand overhang, the substrate required for strand invasion in the synapsis stage and the eventual repair of the DSB. At present there are three identified pre-synapsis systems involved in recombination in bacteria; represented by the AdnAB, AddAB and the RecBCD protein complexes. Each system functions in a similar manner but differ in the physical composition of the machinery. This project investigated the pre-synaptic system of Bacteroides fragilis NCTC9343. Genes encoding putative pre-synapsis proteins were initially identified through analysis of the NCTC9343 genome. The function of these proteins was investigated in vivo by rescue of a repair-deficient strain of E. coli. This demonstrated that Bacteroides fragilis encodes a two component system, where both genes products are required to work in concert for pre-synaptic processing of DSBs. The identified genes were BF2192 and BF2191, and have been renamed addA and addB, respectively. To further examine the role of the AddAB proteins in DSB repair, a Bacteroides fragilis strain with a deletion of addAB was constructed and shown to be extremely sensitive to DNA damaging agents. The AddAB complex was purified and found to be an ATP-dependant helicase and exonuclease that acted on double-stranded DNA ends. In conclusion, this project has identified the proteins involved in pre-synaptic processing of DSBs in B. fragilis NCTC9343, consisting of AddAB homologues, and shown their protective role in repair of DNA damage.

At the neuronal synapse, neurotransmitter-filled synaptic vesicles (SVs) fuse with the presynaptic plasma membrane during activity. Following exocytosis, SVs must be retrieved for neurotransmission to be maintained. Several modes of SV recycling have been identified. During mild neuronal activity, clathrin-mediated endocytosis has been regarded as the dominant SV retrieval mode, however the recently identified ultrafast endocytosis mode may also be important in this condition. During elevated activity, activity-dependent bulk endocytosis (ADBE) is the dominant SV retrieval pathway. In ADBE, large invaginations are formed from the plasma membrane, which then undergo scission to create bulk endosomes. In a second distinct step, SVs bud from these endosomes and specifically repopulate the reserve SV pool. However, since its first identification, only few molecules have been shown to participate in ADBE. The aim of this PhD was to identify novel molecules and elucidate the molecular mechanism of ADBE. To achieve this, two independent biochemical approaches were designed to purify and enrich bulk endosomes from primary neuronal cultures. In the first approach, bulk endosomes and SVs were labelled with a dye, FM1-43, using a strong stimulus. Cells were broken mechanically and the post nuclear supernatant, that contains all intracellular organelles, was collected. The supernatant was then subjected to subcellular fractionation using discontinuous Nycodenz gradients. This stimulated sample was always processed in parallel with a basal sample, where no neuronal stimulus was applied, in order to visualise activity dependent FM loading. After different fractionation protocols were applied, bulk endosomes were efficiently separated from SVs, as revealed by tracking fluorescence in different fractions. The fractionation results were further validated by electron microscopy, where bulk endosomes and SVs were labelled with horseradish peroxidase and purified using the established protocol. Immunoblotting against selected SV cargo proteins from stimulated bulk endosome and SV samples, indicated the specific and preferential localisation of VAMP4 on bulk endosomes, in contrast to other SV cargo. The molecular identity of bulk endosomes was also approached by submitting the bulk endosome fractions to semi-quantitative mass spectrometry. This analysis revealed many different proteins that were identified in bulk endosome samples and quantification approaches further indicated proteins that can be localised on bulk endosomes and have a potential role in ADBE. A second magnetic isolation approach was designed, to purify bulk endosomes using a completely different methodology. In this case, bulk endosomes were specifically labelled with iron nanoparticles, which are preferentially taken up by bulk endosomes since they are larger than SVs. The cells were broken as before and post nuclear supernatant was acquired. In this case, the supernatant was submitted to magnetic isolation that separated iron beads labelled structures from all other intracellular organelles. An extensive immunoblotting analysis of magnetic bulk endosomes validated that VAMP4 and syndapin I, two essential ADBE proteins, were enriched in these purified samples. These magnetic bulk endosomes were also analysed using semi-quantitative MS and revealed many proteins with a potential role in ADBE. Significant overlap between the two independent methods was observed, further validating these approaches. Combining these two methods with bioinformatics tools allowed the identification of the molecular signature of ADBE as well as novel key candidates for this process. Specific molecules were investigated for their role in ADBE and SV recycling using a variety of different real-time fluorescent imaging assays. A major focus was on rab small GTPases. High molecular weight dextran uptake was used to specifically study the role of these proteins in ADBE, as it preferentially reports uptake via larger bulk endosomes. A pH sensitive chimeric protein, synaptophysin-pHluorin, was used to investigate the role of these proteins in CME. Additional imaging assays were used to answer emerging questions regarding the function and localisation of these targets in the presynapse. Using these approaches, rab11A and rab35 were found to promote ADBE and accelerate clathrin-mediated endocytosis. This effect was specific to high intensity stimulation, while SV exocytosis was not affected. Further research on the role of both novel and established ADBE molecules will provide key future insights into the mechanism of both bulk endosome generation/scission and subsequent SV reformation. A very promising group is rab proteins and now evidence for their implication in SV recycling is presented here. Identification and characterisation of new targets will allow to investigate the role of ADBE in neurotransmission in both physiology and pathophysiology.

Our ability to learn relies on the potential of neuronal networks to change through experience. The primary visual cortex (V1) has become a popular system for studying how experience shapes cortical neuronal networks. Experience-dependent plasticity in V1 has been extensively studied in young animals, revealing that experiences in early postnatal life substantially shape neuronal activity in the developing cortex. In contrast, less is known about how experiences modify the representation of visual stimuli in the adult brain. In addition, adult experience-dependent plasticity remains largely unexplored in neurodevelopmental disorders. To address this issue, we established a two-photon calcium imaging set-up, suitable for chronic imaging of neuronal activity in awake-behaving mice. We implemented protocols for the reliable expression of genetically encoded calcium indicators (GCaMP6), for the implantation of a chronic cranial window and for the analysis of chronic calcium imaging data. This approach enables us to monitor the activity of hundreds of neurons across days, and up to 4-5 weeks. We used this technique to determine whether the daily exposure to high-contrast gratings would induce experience-dependent changes in V1 neuronal activity. We monitored the activity of putative excitatory neurons and of three non-overlapping populations of inhibitory interneurons in layer 2/3 of adult mice freely running on a cylindrical treadmill. We compared the results obtained from mice that were exposed daily to either a high-contrast grating or to a grey screen and characterized their neuronal response properties. Our results did not reveal significant differences in neuronal properties between these two groups, suggesting a lack of stimulus-specific plasticity in our experimental conditions. However, we did observe and characterize, in both groups, a wide range of activity changes in individual cells over time. We finally applied the same method to investigate impairments in experience-dependent plasticity in a mouse model of intellectual disability (ID), caused by synaptic GTPase-activating protein (SynGAP) haploinsufficiency. SynGAP haploinsufficiency is a common de novo genetic cause of non-syndromic ID and is considered a Type1 risk for autism spectrum disorders. While the impact of Syngap gene mutations has been thoroughly studied at the molecular and cellular levels, neuronal network deficits in vivo remain largely unexplored. In this study, we compared in vivo neuronal activity before and after monocular deprivation in adult mutant mice and littermate controls. These results revealed differences in baseline network activity between both experimental groups. These impairments in cortical neuronal network activity may underlie sensory and cognitive deficits in patients with Syngap gene mutations.

O início do desenvolvimento do sistema nervoso central (SNC) é caracterizado por diversos processos, com períodos críticos, que podem ser influenciados por xenobióticos. Este estudo teve como objetivo comparar os efeitos das diferentes concentrações de nicotina em elementos da transmissão sináptica durante o desenvolvimento de camundongos C57Bl/6. Para tanto, foram utilizados cigarros com duas diferentes concentrações de nicotina, o 3R4F (0,73 mg de nicotina/cigarro) e o 4A1 (0,16 mg de nicotina/cigarro). As exposições ocorreram diariamente a partir do 3° dia de vida (P3) até o 14° dia (P14) por duas horas, e os animais controle foram expostos somente ao ar sintético. Os animais foram eutanasiados em P15, P35 e P65 e avaliamos as seguintes proteínas: sinapsina (SYN1), sinaptotagmina (SYT), sinaptofisina (SYP), sinaptobrevina (SYB), PSD-95 e EGR-1, por Western blotting; o gene Egr-1 por PCR Real Time; MAP-2 e neurofilamentos (Neu) por imunofluorescência no hipocampo, tronco encefálico e cerebelo. Nossos resultados mostraram que na infância (P15) a fumaça do cigarro 3R4F diminuiu SYN1, assim como EGR-1, MAP-2 e Neu no cerebelo. No hipocampo houve aumento de SYN1 e MAP-2, diminuição de PSD-95, Egr-1 e Neu. No tronco encefálico esse cigarro não modificou nenhum dos parâmetros avaliados. Nessa mesma idade, a fumaça do cigarro 4A1 diminuiu MAP-2, Neu e a expressão gênica de Egr-1 no cerebelo; diminuiu MAP-2 e Neu no hipocampo e não promoveu alterações no tronco encefálico. Em P35 (adolescência) o 3R4F manteve reduzido SYN1, EGR-1, MPA-2 and Neu, e também reduziu Egr-1 no cerebelo. A diminuição de SYN1 também foi observada no hipocampo, mas nessa estrutura o 3R4F também aumentou SYT, SYP, MAP-2 and Neu; diminuiu EGR-1 e a expressão de Egr-1. No entanto, no tronco encefálico, foram observados aumento de SYN1 e MAP-2, e uma diminuição de Neu. Em relação à fumaça do 4A1, em P35, nossos resultados mostraram diminuição de SYB, Egr-1, MAP-2 and Neu no cerebelo; aumento de Egr-1, MAP-2 e diminuição de Neu no hipocampo; no tronco encefálico houve aumento de SYB, Egr-1, Neu e diminuição de MAP-2. Na fase adulta (P65) as únicas diferenças estatísticas encontradas foram: no cerebelo: diminuição de SYB pelos cigarros 4A1, aumento de EGR-1 pelo 3R4F e aumento de Egr-1 e MAP-2 por ambos os cigarros; no hipocampo: aumento de Neu por ambos os cigarros; tronco encefálico: aumento de SYB e EGR-1 e diminuição de SYT pelo 4A1, diminuição de SYN1, aumento de EGR-1, Egr-1 e MAP-2 pelo 3R4F. Nossos resultados indicam que a exposição à fumaça do cigarro nos primeiros dias de vida de camundongos, mesmo que em baixas concentrações de nicotina, podem acarretar em alterações em elementos da transmissão sináptica em várias regiões encefálicas durante a infância, adolescência e na fase adulta. / The initial steps of the development of the central nervous system are characterized by several critical processes, which can be affected by xenobiotics. The present study aimed to compare the effect of two different nicotine concentrations in cigarettes on synaptic transmission elements during the development of C57/Bl6 mice. To reach this aim we exposed C57Bl/6 mice to smoke from two different cigarettes - 3R4F (0.73mg of nicotine/cigarette) or 4A1 (0.16mg of nicotine/cigarette), from the third day of life (P3) until the fourteenth (P14) for a period of 1h, twice a day (at 8am and at 3pm). The control animals were exposed only to synthetic air. At P15, P35 and P65, the animals were submitted to euthanasia and different encephalic areas were collected (cerebellum, hippocampus and brainstem); quantification of synapsin (SYN1), synaptotagmin (SYT), synaptophysin (SYP), synaptobrevin (SYB), PSD-95 and EGR1 protein expression was assessed by Western blotting, gene expression of Egr-1 by was assessed by RT-PCR and MAP-2 and neurofilaments (Neu) were assessed by immunofluorescence. Our results showed that exposure to 3R4F smoke decreased the quantification of SYN1 at infancy (P15), as well as EGR-1, MAP-2 and Neu at cerebellum. At hippocampus, there was an increase of SYN1 and MAP-2, decrease of PSD-95, Egr-1 and Neu. At brainstem, 3R4F smoke did not modify any parameter. At the same age, 4A1 smoke decreased the quantification of MAP-2, Neu and the expression of Egr-1, at cerebellum; decreased MAP-2 and Neu at hippocampus and did not alter any parameter at brainstem. At P35 (adolescence) 3R4F smoke still reduced SYN1, EGR-1, MAP-2 and Neu, and reduced Egr-1 at cerebellum. The reduction of SYN1 quantification was also observed at hippocampus, but at this area, 3R4F smoke also increased the quantification of SYT, SYP, MAP-2 and Neu and decreased EGR-1 and the expression of Egr-1. However, at the brainstem, an increased quantification of SYN1 and MAP-2 and a decrease of Neu were observed. Regarding 4A1 smoke, at the same age, our results showed a decreased quantification of SYB, Egr-1, MAP-2 and Neu at cerebellum; increase of Egr-1, MAP-2 and decrease of Neu at hippocampus; and at brainstem, increase of SYB, Egr-1, Neu and decrease of MAP-2. At adulthood (P65) the only statistical differences were: at cerebellum - decreased quantification of SYB by 4A1 cigarette smoke, increase of EGR-1 by 3R4F and increase of Egr-1 and MAP-2 by smoke of both cigarettes; at hippocampus - increase of Neu by smoke of both cigarettes; at brainstem - increase of SYB and EGR-1 and decrease of SYT by 4A1 smoke, decrease of SYN1, increase of EGR-1, Egr-1 and MAP-2 by 3R4F smoke. Thus, we can conclude that exposure to cigarette smoke early in life, even at low nicotine concentrations can modify elements of synaptic transmission, compromising such transmission at several encephalic areas.

Eventos estressantes durante a infância promovem alterações comportamentais e encefálicas persistentes, aumentando a predisposição para transtornos psiquiátricos. A separação materna tem sido utilizada como modelo de estresse pós-natal. Animais submetidos à separação materna apresentam uma resposta exacerbada do eixo hipotálamo-hipófise-adrenal ao estresse. Ao contrário, estudos sugerem que o ambiente enriquecido, por aumentar a neurogênese no giro denteado do hipocampo, pode ter efeitos benéficos sobre doenças de distúrbio comportamental. No presente projeto questionamos se o enriquecimento ambiental interfere com as alterações plásticas promovidas pela separação materna no hipocampo de ratos jovens. Utilizamos imunofluorescência, microscopia confocal, microscopia eletrônica e qRT- PCR de amostras coletadas por microdissecção a laser. A separação materna reduziu a neurogênese hipocampal, bem como a expressão de mRNA para os genes Nr3c1, codificador de receptores glicocorticóides, e Htr1a, codificador de receptores serotoninérgicos (5TH-1A). O enriquecimento ambiental reduziu a expressão de Htr1a. Além disso, aumentou a proporção de sinapses sobre espinhos dendríticos, sugerindo maior plasticidade sináptica. O enriquecimento ambiental, nos animais previamente submetidos à separação materna, aumentou a sobrevivência celular e a expressão de Nr3c1, mas não a diferenciação neuronal hipocampal. As alterações promovidas pela separação materna parecem ser persistentes, mas podem ser parcialmente revertidas pelo enriquecimento do ambiente. / Stressful events during childhood promote persistent behavioral and brain changes, increasing the predisposition to psychiatric disorders. The maternal separation has been used as postnatal stress model. Animals subjected to maternal separation exhibit an exaggerated response of the hypothalamus-pituitary-adrenal axis to stress. Instead, studies suggest that environmental enrichment, by increasing neurogenesis in the dentate gyrus of the hippocampus, has beneficial effects on behavioral disorders. In this project, we discuss whether the environmental enrichment interferes with plastic changes promoted by maternal separation in the hippocampus of young rats. We used immunofluorescence, confocal microscopy, electron microscopy and qRT-PCR of samples collected by a laser microdissection system. The maternal separation reduced hippocampal neurogenesis, as well as the mRNA expression for the genes Nr3c1, that codify glycocorticoid receptors, and Htr1a, that codify serotonin receptors (5HT-1A). Environmental enrichment reduced the expression of Htr1a. Furthermore, increases the proportion of synapses on dendritic spines, suggesting greater synaptic plasticity. The environment enrichment of the animals subjected to maternal separation increased cell survival and the expression of Nr3c1 mRNA, but not the neuronal differentiation in the hippocampus. The changes promoted by maternal separation are persistent, however may be partially reversed by the environmental enrichment.

D'après le postulat de Hebb, les réseaux neuronaux adaptent leur connectivité sous l'influence des activités pré- et post-synaptiques. La " spike-timing-dependent plasticity " (STDP) est une règle d'apprentissage synaptique de type Hebbien, qui repose sur la structure temporelle précise des patrons d'activités appariées de part et d'autre de la synapse. La plasticité cortico-striatale serait le substrat biologique de l'apprentissage procédural effectué par les ganglions de la base. Les neurones de sortie du striatum agissent comme des détecteurs de coïncidence des activités corticales et thalamiques. La STDP cortico-striatale pourrait donc jouer un rôle crucial dans les processus d'encodage de l'apprentissage et la mémoire procédurale. Nous avons exploré les conditions d'émergence et d'expression de la STDP cortico-striatale. / According to Hebbian theory, neural networks refine their connectivity by patterned firing of action potentials in pre- and postsynaptic neurons. Spike-timing-dependent plasticity (STDP) is a synaptic Hebbian learning rule relying on the precise order and the millisecond timing of the paired activities on either side of the synapse. Temporal coding via STDP may be essential for the role of the striatum in learning of motor sequences in which sensory and motor events are associated in a precise time sequence. Corticostriatal long-term plasticity provides a fundamental mechanism for the function of the basal ganglia in procedural learning. Striatal output neurons act as detectors of distributed patterns of cortical and thalamic activity. Thus, corticostriatal STDP should play a major role in information processing in the basal ganglia, which is based on a precise time-coding process. Here, we explored the conditions required for the emergence of corticostriatal STDP.

No description available.

Ca²⁺ influx is one of the critical events that trigger synaptic vesicular release, and the accumulation of residual free Ca²⁺ in synapses is also important for activity-dependent synaptic plasticity. Ca²⁺ imaging with fluorescence indicators (synthetic or genetically encoded) is a powerful approach to monitor Ca²⁺ levels in neurons and synapses. Although accumulating studies in vertebrate systems have been carried out to demonstrate the role of Ca²⁺ in synaptic transmission and plasticity, most of these studies rely on pharmacological methods to infer the molecular mechanism, with less emphasis on forward genetic analysis. The Drosophila neuromuscular junction (NMJ) is a powerful neurogenetic platform for studying synaptic transmission, because of the availability of many mutations. However, not many mutations have been analyzed with Ca²⁺ imaging. Besides, although Genetically Encoded Ca²⁺ Indicators (GECIs) including GCaMPs are increasingly popular as the tool to identify neuronal circuits activated by certain stimuli or mediating particular behaviors, the physiological and functional interpretation of neuronal Ca²⁺ transients reported by GECIs remain obscure. By expressing GCaMPs in NMJ synapses, I characterized a spectrum of genetic mutations including sodium channel alleles parats¹, parabss¹, potassium channel mutations Shaker (ShM, Sh¹²⁰), Shab³, ether-a-go-go (eag¹, eag⁴pm), and double mutant eag¹ Sh¹²⁰. Drosophila NMJs contain at least three different types of synapses, which include glutamatergic tonic motor synapse type Ib, phasic motor synapse type Is, and modulatory octopaminergic synapse type II. In this study, I found that the ion channel mutations did not uniformly alter the Ca²⁺ dynamics in type Ib, Is and II synapses. Based on genetic dissection and pharmacological analyses, I concluded that the excitability type I and type II synapses are differentially regulated by various ion channels, and that ion channels mainly influence the influx of Ca²⁺ upon membrane depolarization but not the subsequent clearance. I also attempted to interpret the significance of synaptic Ca²⁺ transients by correlating Ca²⁺ imaging with electrophysiological recordings. One important gap in the application of GCaMP indicators is its postsynaptic physiological relevance. Correlation of synaptic GCaMP Ca²⁺ transients with postsynaptic currents simultaneously recorded by focal extracellular recording indicated that Ca²⁺ transients reported by GCaMPs were slow, and did not reflect immediate synaptic transmission. Rather, the kinetics of synaptic Ca²⁺ transients was temporally correlated with short-term synaptic plasticity such as facilitation and depression. The hyperexcitable ion channel mutations Sh and parabss¹ enhanced the synaptic Ca²⁺ transient amplitudes as well as depression. Type Is synapses of hyperexcitable mutations such as eag¹ Sh¹²⁰ and parabss¹ often displayed single stimulus pulse-evoked Ca²⁺ transients, which were induced by high frequency repetitive firing of action potentials. Such Ca²⁺ transients were correlated with supernumerary peaks of postsynaptic currents. Based on the slow kinetics and the correlation with short-term plasticity, I conclude that GCaMP Ca²⁺ signals better reflect the accumulation of cytosolic residual Ca²⁺. The spontaneous Ca²⁺ waves in larval motor neurons were well correlated with high frequency nerve action potentials, suggesting that accumulation of residual Ca²⁺ occurs in larval crawling. Overall, this study provided important information about the different excitability control and Ca²⁺ clearance mechanisms in different synapses, and examined how membrane excitability controls the influx and accumulation of synaptic cytosolic residual Ca2+, as indicated by GCaMPs. Further, by correlating synaptic Ca²⁺ dynamics with electrophysiology, this study also investigated how to interpret GCaMP Ca²⁺ signals in the context of facilitation and depression, establishing a basis for an integrated approach of studying short-term synaptic plasticity from complementary physiological signals.

Alzheimer's disease (AD) is characterized by anterograde amnesia followed by a progressive decline in cognitive function. Post mortem examination of forebrain tissue from sufferers reveals the presence of extracellular amyloid-beta plaques, intracellular neurofibrillary tangles, activation of glial cells and massive neuron loss. Transgenic mice expressing mutated forms of the amyloid precursor protein (APP) and presenilin-1 (PS1) genes develop neuritic amyloid plaques, glial cell activation and memory deficits, without the formation of intracellular tangles and neurodegeneration. The mechanisms by which these transgenic mice develop mnemonic deficiencies are unclear. Gene expression of aged memory-deficient APP+PS1 mice compared with non-transgenic littermates measured by microarray and subsequent quantitative real-time PCR (qRT-PCR) analysis revealed 6 inducible immediated-early genes (IEGs) and 5 other more stably expressed plasticity-related genes (PRGs) that were significantly down-regulated in amyloid-containing hippocampus, but not down-regulated in amyloid-free cerebellum. Other genes linked to memory remained stably expressed in both regions. Analysis of forebrain AD tissue revealed that all genes measured were down-regulated presumably due to neurodegeneration, while the amyloid-free region maintained stable expression. IEG expression in APP+PS1 mice was sensitive to lower levels of amyloid. However, only in the presence of a substantially larger amyloid burden, when memory deficits reliably persist, were both PRGs and IEGs down-regulated. Importantly, we found that IEG expression was decreased in APP+PS1 mice following exposure to a novel environment, indicating that the induction of these IEGs was impaired, rather than the basal expression of resting mice. Na+/K+ ATPase, an enzyme critical for the maintenance of membrane potential, was identified as a down-regulated PRG. We found that activity of this enzyme was both impaired in the hippocampi of APP+PS1 mice and specifically inhibited by high concentrations of amyloid-beta. Na+/K+ ATPase immunostaining revealed decreased protein in the area surrounding the amyloid plaque, where dystrophic neurites were visible, indicating amyloid may disrupt ionic gradients resulting in neuritic dystrophia. These findings suggest that amyloid accumulation may result in the impairment of IEG induction and disruption of the Na+/K+ ATPase, possibly eliciting the memory loss developed in APP+PS1 mice.