Flavour Tagging at the LHCb experiment is a fundamental tool for the measurement of B oscillations and the study of CP violation. This document explains the development of different tagging techniques and the different strategies used to combine them to determine the flavour of the B meson as precisely as possible. The response of the tagging algorithms also needs to be optimized and calibrated. Both procedures are described using the available LHCb datasets corresponding to various integrated luminosities. First results on the tagging performances are shown for different control channels and physics measurements.

The field of organic electronics, in which -conjugated, organic molecules and polymers are used as the active components (e.g., semiconductor, light emitter/harvester, etc.), has lead to a number a number of key technological developments that have been founded within fundamental research disciplines. In the Dissertation that follows, the research involves the use of quantum-chemical techniques to elucidate fundamental aspects of both intermolecular and intramolecular electron-transfer processes in organic, -conjugated molecules. The Dissertation begins with an introduction and brief review of organic molecular systems used as electron-transport semiconducting materials in device applications and/or in the fundamental studies of intramolecular mixed-valence processes. This introductory material is then followed by a brief review of the electronic-structure methods (e.g., Hartree-Fock theory and Density Functional Theory) and electron-transfer theory (i.e., semiclassical Marcus theory) employed throughout the investigations. The next three Chapters deal with investigations related to the characterization of non-rigid, -conjugated molecular systems that have amorphous solid-state properties used as the electron-transport layer in organic electronic and optoelectronic devices. Chapters 3 and 4 involve studies of silole- (silacyclopentadiene)-based materials that possess attractive electronic and optical properties in the solid state. Chapter 5 offers a preliminary study of dioxaborine-based molecular structures as electron-transport systems. In Chapters 6 8, the focus of the work shifts to investigations of organic mixed-valence systems. Chapter 6 centers on the examination of tetraanisylarylenediamine systems where the inter-redox site distances are approximately equal throughout the series. Chapter 7 examines the bridge-length dependence of the geometric structure, charge-(de)localization, and electronic coupling for a series of vinylene- and phenylene-vinylene-bridged bis-dianisylamines. In Chapter 8, the role of symmetric vibrations in the delocalization of the excess charge is studied in a dioxaborine radical-anion and a series of radical-cation bridged-bisdimethylamines. Finally, Chapter 9 provides a synopsis of the work and goals for future consideration.

This thesis deals with the investigation of the first hyperpolarizabilities (β) of a large number of molecules linked to other molecules either covalently or noncovalently. Chapter 1 gives a brief introduction to supramolecular chemistry and Nonlinear Optics (NLO). A survey of literature pertinent to noncovalently interacting supramolecular assembly and their NLO properties as well as NLO properties of oligomeric systems has been presented. The scope of the present investigation has been described at the end of the chapter. Chapter 2 discusses all the methods used in carrying out this thesis work. The first hyperpolarizabilities (β) of all the compounds have been measured by the hyper Rayleigh scattering (HRS) technique; the experimental details of which are written in this chapter. Various spectroscopic techniques such as NMR, IR, UV-Vis, etc. that were used in the investigation have been presented. The subsequent chapters 3-5 deal with the actual results obtained in this work. In chapter 3 first hyperpolarizabilities of o-, m-, and p-aminobenzoic acids and their oligomers viz., dimer, trimer and tetramer (covalently linked) have been studied. The compounds are synthesized and characterized by various spectroscopic methods and their β values have been measured by HRS. The hyperpolarizability increases in going from the monomer to the dimer but decreases subsequently from the dimer to the trimer to the tetramer. This unexpected trend in β has been attributed to the formation of molecular aggregates in the trimers and tetramers. Further evidences of aggregation come from the results of1H NMR spectroscopy and conductivity measurements. In chapter 4, synthesis, characterization and HRS investigation to probe the formation, dissociation and binding constants of hydrogen bonded supramolecular complexes (noncovalent interaction) formed in solution between 6-amino-2-(pivaloylamino)pyridine and ferrocene functionalized barbituric acid and 5-methoxy-N,N′-bis(6-amino-2-pyridinyl)-1,3-benzenedicarboxamide and ferrocenyl barbituric acid have been described. From the HRS data the stoichiometry of the supramolecular complexes has been determined and compared to that from the NMR data. Some of the complex stoichiometries that are measured by HRS have not been seen in the NMR data and vice versa. The results have been rationalized in terms of the strengths and weaknesses of various spectroscopic methods as applied to this problem. Many fold increase in the β value has been realized in the supramolecular complex formation process. Depolarized HRS experiments have been carried out to obtain structural information on the complexes. In the last chapter the synthesis, characterization and measurements on the first hyperpolarizabilities of unsubstituted tetraphenylporphyrin and its metallated complexes have been presented. Synthesis of supramolecular complexes of ferrocenyl barbituric acid with functionalized porphyrin compounds has been carried out although the amount of the final complex was insufficient for HRS measurements. This chapter ends with a perspective for the future work in the direction.

There is considerable current interest in the design and synthesis of new phosphorus ligands and their transition metal complexes in view of their potential applications in homogeneous catalysis. The present study is concerned with the synthesis of new chiral and achiral “ diphosphazanes”, which constitute a class of versatile short-bite bidentate phosphine ligands, and studying their reactivity towards late transition metals (Ag, Pd and Ru). Symmetrical diphosphazane ligands, MeN{P(OR)2}2 (R = (1R, 2S, 5R)-menthyl) and MeN{P(SR)2}2, (R = C6H5) and unsymmetrical diphosphazane ligands, Ph2PN(Pri)PPhY, (Y =OC6H3Me2-2,6 or NMePh) have been synthesized and structurally characterized. The reactivity of these ligands towards the transition metal precursors viz., [PdCl2(COD)] and [CpRu(PPh3)2Cl] has been investigated. The reaction of [Ru(bipy)2Cl2] with the diphosphazane, PriN(PPh2)2 in the presence of AgOTf to synthesize [Ru(bipy)2{PriN(PPh2)2}2]OTf led to an unexpected entry into the Ag(I) chemistry of this ligand. By optimizing the reaction conditions, several mononuclear, dinuclear and trinuclear complexes such as [Ag(K2-PriN(PPh2)2)2]X, [Ag(µ-PriN(PPh2)2)X]2 and [Ag3(µ-(Cl)2(µ-PriN(PPh2)2)3]X (X = NO3, OTf or PF6) have been synthesized. A polymeric complex, [Ag2(µ-PriN(PPh2)2)( µ-NO3)2]n in which the ligand adopts a unique ‘Cs’ geometry has also beenstructurally characterized. This polymeric complex is used to synthesize a helical polymer,[Ag2{µ-PriN(PPh2)2}(DABCO)(NO3)2]n and π- π stacked supramolecular assemblies such as [Ag2(NO3)2(µ-Ph2PN(Pri)PPh2)(2,2'-bipy)2] and [Ag2{µ-PriN(PPh2)2}(1,10-phen)2](NO3)2]. The reaction of a sterically bulky diphosphazane ligand, EtN{P(OC6H3(Pri)2-2,6)2}2 (L) with[(η3-1-R,R’-C3H3)Pd(µ-Cl)]2 in the presence of NH4PF6 gives the cationic complex, [(η 3-1-R,R’-C3H3)Pd(L)]PF6 (R = H; R’= H or Me) as the sole product. In the absence of NH4PF6, theinitially formed cationic complex, [(η 3-C3H5)Pd(L)]PF6 is transformed into a mixture of chlorobridged complexes over a period of 96 h. An octa-palladium complex [(η3-C3H5)(2-Cl- η3-C3H4)Pd4(µ-Cl)4(µ-L)]2 is formed as a result of nucleophilic substitution by a chloride ligand at the central allyl carbon atom. The reaction of L with [(η3-C3H5)Pd(µ-Cl)]2 in the presence of K2CO3 yields a dinuclear complex, [(η3-C3H5)Pd2(µ-L)Cl] containing a coordinatively unsaturated T-shaped palladium center. This complex exhibits high catalytic activity and large“turn-over numbers” in the catalytic hydrophenylation of norbornene. Reactions of diphosphazanes with cyclometalated palladium complexes of the general formula [Pd( k2-(C,N)-Me2NCHMe(C6H4))(solvent)2]PF6 derived from a chiral amine, (S)-N,N-dimethyl-1-phenethylamine give chelate complexes of the type [Pd{ k2-(C,N)-Me2NCHMe(C6H4)}(LL)] PF6, (L-L = diphosphazane). Chiral racemic diphosphazanes give a mixture of diastereomeric(S,R and S,S) complexes which could not be separated. These cyclometalated complexes show moderate catalytic activity in C−C bond forming reactions (hydrophenylation /Suzuki coupling).

<p>This thesis presents quantum chemical calculations, applications of the response function formalism recently implemented within the framework of density functional theory (DFT) by our research group. The purpose of the calculations is to assess the performance of this perturbative approach to determining heavy atom effects on magnetic resonance parameters. Relativistic corrections can be generated by spin-orbit interactions or by scalar relativistic effects due to high velocity electrons in the atomic core region of heavy atoms. In this work, the evaluation of nuclear magnetic resonance (NMR) parameters is considered, the nuclear shielding tensor and the indirect nuclear spin-spin coupling tensor. For series of homologous compounds, it is found that both types of corrections to these parameters are increasing in size upon substitution of a constituent atom by a heavier element, but that their relative importance is system dependent. The obtained results are compatible with the ones provided by electron correlated <em>ab initio</em> methods, and a qualitative agreement with experimentally determined parameters is overall achieved. The methodology presented in this thesis aims to be a practical approach which can be applied in the study of molecular properties of large systems.</p><p>This thesis also addresses the calculation of hyperfine coupling constants, and evaluates a novel approach to the treatment of spin-polarization in spin restricted calculations without the spin contamination associated with spin unrestricted calculations.</p>

Nuclear magnetic resonance (NMR) is a powerful experimental technique for probing the local environment of nuclei in materials. However, it can be difficult to separate the large number of interactions that are recorded in the resulting spectra. First-principles calculations based on quantum mechanics therefore provide much-needed support for interpreting experimental spectra. In this way, the underlying mechanisms recorded in experimental spectra can be investigated on an atomic level, and trends can be noted with which to guide the direction of future experiments. This thesis presents two cases in which first-principles calculations do just that. The first is an investigation of the perovskite structures of NaNbO₃, KNbO₃, LiNbO₃ and the related solid solutions of Na_xK_1-xNbO₃, K_xNa_1-xNbO₃ and Li_xNa_1-xNbO₃ in order to study how structural disorder affects their NMR parameters. The second investigation involves the calculation of the Knight shift in platinum, palladium and rhodium---in their elemental bulk forms and in a set of surface structures. The Knight shift is a systematic shift in the NMR frequencies of metallic systems. It arises from the hyperfine interaction between the nuclear spins and the spins of the unpaired conduction electrons. When calculating the Knight shift, it is found that the Brillouin zone must be very finely sampled. A discussion of core polarisation is also presented. This is the polarisation of core electrons as a result of their interaction with valence electrons. In the case of Curie paramagnets, core polarisation can have a significant effect on the calculation of hyperfine parameters.

Les carburants synthétisés à partir de la biomasse représentent une alternative crédible aux carburants conventionnels. La biomasse lignocellulosique présente en effet une importante disponibilité et son traitement physico-chimique permet d’obtenir une grande variété de composés aux propriétés intéressantes. La structure de ces biocarburants fait cependant intervenir des fonctions oxygénées, qui rendent la compréhension des phénomènes d’oxydation complexes. Le projet 2G-CSAFE, dans lequel s’inscrit le travail présenté ici, a pour objectif d’explorer la cinétique d’oxydation de certains de ces carburants. Les fonctions chimiques étudiées lors de ce travail sont les fonctions cétone, éther et ester. La combinaison de deux de ces fonctions (comme dans le cas des lévulinates) est également étudiée. Après une étude bibliographique qui vise à identifier les informations apportées par les études passées sur les composés les plus simples de chaque famille (acétone, diméthyl-éther et formiate de méthyle), l’accent est mis sur les rares travaux disponibles liés à la butanone, la cyclopentanone, la cyclohexanone, le dibutyl-éther, le formiate de butyle et le lévulinate de méthyle. La cinétique d’oxydation de ces composés est ensuite étudiée par des approches numériques et expérimentales. Des calculs de chimie théorique sont menés dans un premier temps pour étudier l’impact des fonctions oxygénées sur la structure du carburant et pour obtenir les constantes de vitesse relatives aux principales réactions mises en jeu. Des expériences en réacteur auto-agité par jets gazeux sont ensuite réalisées sur une gamme de température pouvant aller de 450 à 1250 K, à des pressions de 1 ou 10 atm et pour des richesses allant de 0,5 à 2. Les données ainsi collectées sont enfin utilisées pour développer des mécanismes cinétiques. L’accord entre les simulations et les données expérimentales est globalement satisfaisant pour des composés aussi complexes et les résultats présentés ici pourront être source d’analogies pour la modélisation d’autres carburants oxygénés. / Fuels produced from biomass are an interesting alternative to conventional fuels. Lignocellulosic biomass is indeed highly available and a wide variety of compounds can be obtained through its physico-chemical conversion. However, the structure of the fuels obtained from such processes involves oxygenated groups that make complicated the understanding of the oxidation chemistry. The work presented here is part of the 2G-CSAFE project, which aims at exploring the oxidation kinetics of these fuels. Chemical functions studied in this work include ketones, ethers and esters. The combination of two functions (as for levulinates) is also investigated. After a literature review aiming at collecting the information reported on the simplest compound of each group (acetone, dimethylether and methylformate), available studies on butanone, cyclopentanone, cyclohexanone, dibutyl-ether, butyl-formate and methyl levulinate are considered. The oxidation of these compounds is thereafter studied by numerical and experimental approaches. Ab initio calculations are performed to study the impact of the oxygenated groups on the structure and to derive rate constants for the major chemical pathways. Experiments are then carried out in a jet-stirred reactor for temperatures ranging from 450 to 1250 K, pressures of 1 or 10 atm and equivalence ratios from 0.5 to 2. The data obtained through these two approaches are finally used to develop and validate kinetic mechanisms. The overall agreement between experiments and simulations is satisfactory and results presented here can be used as a source of analogy for the future modeling of other similar oxygenated fuels.

Aminoacetona (AA) é um catabólito de Thr e Gly que se acumula nas síndromes cri-du-chat e treoninemia. Atualmente, a oxidação de AA é considerada uma das fontes alternativas de metilglioxal (MG), agente citotóxico e genotóxico, em diabetes mellitus. Em estados de deficiência metabólica, tal como o diabetes, há acúmulo de AA que, por sua vez, sofre oxidação na presença de amino oxidases sensíveis à semicarbazida (SSAO) com a produção de MG, H2O2 e NH4+. As SSAO são enzimas Cu-dependentes, cujo mecanismo de atuação ainda é pouco conhecido e possui como substrato, além de AA, metilamina (endógena) e a benzilamina (xenobiótico). AA possui um grupo amino vicinal à uma carbonila, o que sugere que ela possa sofrer enolização e oxidação catalisada por metal, produzindo espécies reativas de oxigênio (EROs), inclusive radicais HO&#8226;. A presente tese tem por objetivo esclarecer o mecanismo pelo qual AA sofre oxidação aeróbica, direta e catalisada por metal, com concomitante produção de EROs. Foi dada ênfase à catalise por ferro por sua implicação em desordens associadas com diabetes. Serão apresentados resultados que implicam AA como promotora de danos a membrana de mitocôndrias isoladas, bem como a estrutura proteica de ferritina e ceruloplasmina (CP). Como ferritina e CP estão envolvidas na homeostase de ferro, os danos causados a estas proteínas por AA possivelmente afetam o estado redox de plasma de diabéticos, contribuindo significantemente para o aumento do estresse oxidativo no diabetes. / Aminoacetone (AA) is a threonine and glycine catabolite long known to accumulate in cri-du-chat and threoninemia syndromes and, more recent1y, implicated as a contributing source of methylglyoxal (MG) in diabetes mellitus. AcetylCoA overproduction in diabetes also leads to AA accumulation. AA as well as many other endogenous (e.g., methylamine) and xenobiotic amines (e.g., benzylamine) are oxidized by dioxygen in the presence of SSAO, a group of poorly understood plasma circulating and membrane bound Cu-dependent enzymes, yielding an aldehyde, H2O2 and NH4+ ions. With AA, SSAO activity paradoxally produces the cytotoxic and genotoxic MG. AA bears an amino group vicinal to the carbonyl function and therefore is expected to undergo phosphate-catalyzed enolization and iron-catalyzed oxidation to yield reactive oxygen species (ROS), including HO&#8226; radicals. The present work aims to clarify the mechanisms by which AA undergoes direct and metal-catalyzed aerobic oxidation to yield deleterious ROS, with emphasis on the catalytic role of iron given its well-known implications in diabetes. In the present work we show that ROS generated through the aerobic oxidation of AA are able to induce damage in isolated rat liver mitochondria as well as in horse spleen ferritin (HoSF) and human ceruloplasmin (CP). The current findings of changes in HoSF and CP may contribute to explain intracellular iron-induced oxidative stress during AA accumulation in diabetes mellitus patients.

O objetivo da pnmeIra parte do presente projeto é a síntese total da Isocicutoxina (esquema 1) e de alguns feromânios sexuais de insetos (esquema 2), utilizando algumas das reações já estudadas sistematicamente no nosso laboratório. (Ver PDF) As etapas chaves para síntese da Isocicutoxina foram uma reação de acoplamento entre um diino e um telureto vinílico, seguida por urna reação de Wittig. As etapas chaves para a síntese dos feromânios sexuais foram urna reação de acoplamento cruzado de um telureto vinílico com um organocrupato, seguida por urna reação tipo SN2 com um reagente de Grignard. O objetivo da segunda parte do presente projeto é a revisão bibliográfica e a sistematização de dados de RMN de 1H, 13C e 125Te d.e compostos contendo átomos de telúrio. Os ligantes contendo telúrio tiveram seus valores de RMN sistematizados e seus valores de coeficientes de blindagem efetivos analisados (esquema 3). (Ver PDF) Através de um software especializado, um banco de dados foi criado e possibilitou a simulação de espectros de RMN de 13C e 125Te. / The main goal of the first part of this project is the total synthesis of isocicutoxin (scheme 1) and some insects\' sexual pheromones by means of some reactions already studied by our group (scheme 2). (See PDF) The key steps for the synthesis of isocicutoxin were a coupling reaction between a diyne and a vinylic telluride, followed by a Wittig reaction. The key steps for the synthesis ofthe sexual pheromones were a cross coupling reaction between a vinylic telluride and an organocuprate, followed by a SN2 reaction with a Grignard reagent. The mam goal of the second part of the project lS the bibliographic reVleW and the systematization of 1H, 13C and 125Te data of tellurium compounds. The ligands containing tellurium had their NMR and their effective shielding values analyzed (Scheme 3). Using specialized software, a database was developed, which allowed the prediction of NMR 13C and 125Te spectra.

O aumento da concentração de gases de efeito estufa (GEE) de fontes antropogênicas tem sido visto como uma das principais contribuições para o aquecimento global, ameaçando a vida no planeta. O dióxido de carbono (CO2) é um dos principais GEE e suas fontes geradoras estão relacionadas a processos essenciais à sociedade, como a produção de energia, produtos diversos e transporte. A conversão do CO2 parece ser uma alternativa promissora para reduzir a emissão deste gás na atmosfera. De particular interesse para este estudo, a fotorredução do CO2 a metanol pode contribuir para mitigar o problema dos GEE, gerando um importante insumo da indústria química. Assim, este estudo tem por objetivo utilizar cálculos quanto-mecânicos, como a Teoria do Funcional Densidade, para investigar um caminho para a reação de redução do CO2. A reação de redução do CO2 à ácido fórmico, formaldeído e metanol foi estudada sem a interação com o catalisador e na presença de dióxido de titânio como catalisador. Foi realizada uma comparação de cálculos em diferentes níveis teóricos e diferentes bases, com dados experimentais. Para os cálculos envolvendo o TiO2, foi utilizado o nível B3LYP/6-31G(d,p). Frequências vibracionais também foram calculadas para cada etapa, permitindo a identificação de possíveis estados de transição e estimativa de barreiras de reação (energia potencial). Cálculos de coordenada intrínseca de reação (IRC) foram empregados para confirmar que os estados de transição encontrados, estão relacionados a cada etapa estudada. A comparação da redução do dióxido de carbono a ácido fórmico, com e sem catalisador, mostrou que a presença do dióxido de titânio reduziu em mais de 25,0% a barreira reacional desta etapa