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  • About
  • The Global ETD Search service is a free service for researchers to find electronic theses and dissertations. This service is provided by the Networked Digital Library of Theses and Dissertations.
    Our metadata is collected from universities around the world. If you manage a university/consortium/country archive and want to be added, details can be found on the NDLTD website.
1

Constructing a 3D Structure Database of Diterpenoids Produced from Formosa Soft Corals

Huang, Guan-syuan 04 August 2010 (has links)
In recent years, marine natural products in drug development increasingly wide range of applications. Both Taiwan's geographical location and climate are creating a rich marine biodiversity. Hence there is needed to construct a marine natural product database which with Taiwan features. The goal of this study is to establish a Taiwan's marine natural product database, with preliminary collected Formosan soft coral diterpenoids natural products from Taiwan for drug development features. The database included normal physical and chemical properties of compounds and biological activity assay from literature. Key project for the database is to construct three-dimensional structure information for marine natural products. In this study, it was to build and to check the correct three-dimensional structure by use of computer simulation study comparing with nuclear magnetic resonance (NMR) spectroscopy information from literature. The identification of the folding errors in three-dimensional structure of various compound skeleton types by computer was also discussed. And there was also discussed the relationship between potential energy and three-dimensional structure of compounds by compare with computer simulated structure and NMR structure.
2

Strukturní studie interakcí proteinu LEDGF/p75. / Structural studies of LEDGF/p75 interactions

Těšina, Petr January 2016 (has links)
3 ABSTRACT LEDGF/p75 protein is a human transcriptional co-activator and epigenetic reader associated with transcriptionally active chromatin. It is crucial for HIV integration and MLL1 fusion-driven leukemia development. Interactions of LEDGF/p75 with HIV integrase (HIV IN) and MLL1-menin complex are considered an attractive therapeutic target for drug development. LEDGF/p75 interacts with both HIV IN and MLL1-menin complex through its integrase binding domain (IBD). While the pathophysiological interactions of LEDGF/p75 IBD were intensively studied, little was known about the physiological ones. In addition to HIV IN and MLL1, the LEDGF/p75 IBD also interacts with JPO2, PogZ, ASK and MLL2. In search for specific inhibitors of LEDGF/p75 IBD interaction with HIV IN and MLL1, it is essential to obtain detailed information about its interactions with all binding partners. The IBD-MLL1-menin complex has been structurally characterized, but only partially. Using NMR spectroscopy, we identified and mapped a novel part of the IBD-MLL1 interface. This additional interface is able to maintain the interaction between LEDGF/p75 and MLL1 even without the presence of menin, which was considered necessary. Moreover, colony forming assays of primary leukemic blasts revealed that this additional interface is essential for...
3

Determinação da estrutura tridimensional de uma lectina de sementes de Canavalia boliviana por cristalografia de raios X / Determination of three-dimensional structure of a lectin from seeds of Canavalia boliviana by X-ray crystallography

Moura, Tales Rocha de January 2009 (has links)
MOURA, Tales Rocha de. Determinação da estrutura tridimensional de uma lectina de sementes de Canavalia boliviana por cristalografia de raios X. 2009. 73 f. Dissertação (Mestrado em Bioquímica)-Universidade Federal do Ceará, Fortaleza-CE, 2009. / Submitted by Eric Santiago (erichhcl@gmail.com) on 2016-07-11T14:00:52Z No. of bitstreams: 1 2009_dis_tsmoura.pdf: 11624774 bytes, checksum: d71d11ce7ece3611dd6f8e8a0ea9a90c (MD5) / Approved for entry into archive by José Jairo Viana de Sousa (jairo@ufc.br) on 2016-08-02T20:21:40Z (GMT) No. of bitstreams: 1 2009_dis_tsmoura.pdf: 11624774 bytes, checksum: d71d11ce7ece3611dd6f8e8a0ea9a90c (MD5) / Made available in DSpace on 2016-08-02T20:21:40Z (GMT). No. of bitstreams: 1 2009_dis_tsmoura.pdf: 11624774 bytes, checksum: d71d11ce7ece3611dd6f8e8a0ea9a90c (MD5) Previous issue date: 2009 / Lectins are proteins of non immune origin with non-catalytic site that bind reversibly and specific carbohydrates, containing or not a catalytic-site. Plant lectins are the most studied group of carbohydrate binding proteins. Despite the high similarity between the members of the Diocleinae sub tribe (Leguminosae) group, they present different biological activities. Canavalia boliviana lectin (Cbol) was purified using a Sephadex G-50 column and crystallized in the presence of X-Man by hanging-drop vapor diffusion at 293K. After optimizations crystals suitable for diffraction were obtained under the condition 0.1 M HEPES pH 7.5 and 3.0 M sodium formate. The crystal belongs to the monoclinic space group C2, with unit-cell parameters a = 126.70 Å, b = 66.64 Å, c = 64.99 Å and the angles α = 90.0° β = 120.8° γ = 90.0°. A complete data set was collected at 1.5 Å resolution. Assuming the presence of a dimmer in the asymmetric unit, the solvent content was estimated to be about 46%. The structure was solved at 1.6 Å using molecular replacement to solve the phase problem and CGL coordinates was used as model. The refinement was satisfactory Rfactor and Rfree were respectively 17.98 and 20.71 and all amino acids residues were found in allowed regions. The primary structure showed 98% of identity to ConA and others ConA like lectins. The tridimensional structure observed showed high similarity to others already described structures, but some differences could be observed mainly on loop regions. These differences could be responsible for the distinct biological effects of these proteins / Lectinas de plantas são proteínas de origem não-imune contendo pelo menos um domínio não-catalítico, capaz de se ligar específica e reversivelmente a mono ou oligossacarídeos, podendo ou não apresentar sítios catalíticos. As lectinas de planta são o grupo mais estudado dessas proteínas. Apesar da alta similaridade dos membros da subtribo Diocleinae, apresentam diferenças na especificidade a carboidratos e atividades biológicas variadas. A lectina de sementes de Canavalia boliviana foi purificada utilizando cromatografia de afinidade em matriz de Sephadex G-50 e cristalizada por difusão de vapor a 293 K. Após otimizações bons cristais foram obtidos utilizando a condição de 0,1M de HEPES pH 7,5 com 3,0 M de formato de sódio. Os cristais apresentavam o grupo espacial monoclínico C2, com parâmetros de cela de a = 126,70 Å, b = 66,64 Å, c = 64,99 Å e ângulos de α = 90,0° β = 120,8° γ = 90,0°. Observando a presença de um dímero na unidade assimétrica foi estimada uma concentração de 46% de solvente no cristal. A estrutura foi resolvida a 1,6 Å usando substituição molecular para resolver o problema das fases e as coordenadas da CGL foram utilizadas como modelo. O refinamento foi satisfatório com Rfator e Rfree 17,89 e 20,71 respectivamente e todos os resíduos de aminoácidos se mostraram em regiões permitidas no gráfico de Ramachandran. A estrutura primaria apresentou identidade de 98% com a ConA e outras lectinas do tipo ConA. A estrutura tridimensional se mostrou semelhante com outras estruturas já descritas, mas algumas diferenças foram observadas principalmente em regiões de “loop”. Essas diferenças podem ser responsáveis pelas diferenças nas atividades biológicas dessas proteínas
4

DeterminaÃÃo da estrutura tridimensional de uma lectina de sementes de Canavalia boliviana por cristalografia de raios X / Determination of three-dimensional structure of a lectin from seeds of Canavalia boliviana by X-ray crystallography

Tales Rocha de Moura 25 August 2009 (has links)
CoordenaÃÃo de AperfeiÃoamento de Pessoal de NÃvel Superior / Lectinas de plantas sÃo proteÃnas de origem nÃo-imune contendo pelo menos um domÃnio nÃo-catalÃtico, capaz de se ligar especÃfica e reversivelmente a mono ou oligossacarÃdeos, podendo ou nÃo apresentar sÃtios catalÃticos. As lectinas de planta sÃo o grupo mais estudado dessas proteÃnas. Apesar da alta similaridade dos membros da subtribo Diocleinae, apresentam diferenÃas na especificidade a carboidratos e atividades biolÃgicas variadas. A lectina de sementes de Canavalia boliviana foi purificada utilizando cromatografia de afinidade em matriz de Sephadex G-50 e cristalizada por difusÃo de vapor a 293 K. ApÃs otimizaÃÃes bons cristais foram obtidos utilizando a condiÃÃo de 0,1M de HEPES pH 7,5 com 3,0 M de formato de sÃdio. Os cristais apresentavam o grupo espacial monoclÃnico C2, com parÃmetros de cela de a = 126,70 Ã, b = 66,64 Ã, c = 64,99 à e Ãngulos de α = 90,0 β = 120,8 γ = 90,0Â. Observando a presenÃa de um dÃmero na unidade assimÃtrica foi estimada uma concentraÃÃo de 46% de solvente no cristal. A estrutura foi resolvida a 1,6 à usando substituiÃÃo molecular para resolver o problema das fases e as coordenadas da CGL foram utilizadas como modelo. O refinamento foi satisfatÃrio com Rfator e Rfree 17,89 e 20,71 respectivamente e todos os resÃduos de aminoÃcidos se mostraram em regiÃes permitidas no grÃfico de Ramachandran. A estrutura primaria apresentou identidade de 98% com a ConA e outras lectinas do tipo ConA. A estrutura tridimensional se mostrou semelhante com outras estruturas jà descritas, mas algumas diferenÃas foram observadas principalmente em regiÃes de âloopâ. Essas diferenÃas podem ser responsÃveis pelas diferenÃas nas atividades biolÃgicas dessas proteÃnas / Lectins are proteins of non immune origin with non-catalytic site that bind reversibly and specific carbohydrates, containing or not a catalytic-site. Plant lectins are the most studied group of carbohydrate binding proteins. Despite the high similarity between the members of the Diocleinae sub tribe (Leguminosae) group, they present different biological activities. Canavalia boliviana lectin (Cbol) was purified using a Sephadex G-50 column and crystallized in the presence of X-Man by hanging-drop vapor diffusion at 293K. After optimizations crystals suitable for diffraction were obtained under the condition 0.1 M HEPES pH 7.5 and 3.0 M sodium formate. The crystal belongs to the monoclinic space group C2, with unit-cell parameters a = 126.70 Ã, b = 66.64 Ã, c = 64.99 à and the angles α = 90.0 β = 120.8 γ = 90.0Â. A complete data set was collected at 1.5 à resolution. Assuming the presence of a dimmer in the asymmetric unit, the solvent content was estimated to be about 46%. The structure was solved at 1.6 à using molecular replacement to solve the phase problem and CGL coordinates was used as model. The refinement was satisfactory Rfactor and Rfree were respectively 17.98 and 20.71 and all amino acids residues were found in allowed regions. The primary structure showed 98% of identity to ConA and others ConA like lectins. The tridimensional structure observed showed high similarity to others already described structures, but some differences could be observed mainly on loop regions. These differences could be responsible for the distinct biological effects of these proteins
5

Estrutura tridimensional da bothropasina, uma metaloprotease/desintegrina do veneno de bothrops jararaca / The three-dimensional structure of bothropasin, the main hemorrhagic factor from bothrops jararaca venon

Muniz, João Renato Carvalho 21 September 2007 (has links)
A bothropasina é uma proteína hemorrágica de 48 kDa, pertencente à classe P-III das metaloproteases, isolada a partir do veneno bruto da serpente brasileira Bothrops jararaca, e que possui os domínios adesivos desintegrina (D) e rico em cisteína (C). Neste trabalho, nós apresentamos a estrutura cristalográfica da bothropasina complexada ao inibidor POL647. O domínio catalítico , metaloprotease (M), pode ser dividido em dois subdomínios, dispostos de maneira muito similar aos descritos para essa família de metaloproteases de venenos de serpentes (em inglês \"SVMPs\"), que inclui os sítios de ligação ao zinco e ao cálcio. A cisteína livre, resíduo Cys189, está localizado em um núcleo hidrofóbico e, sendo assim, impossibilitado de fazer pontes dissulfeto ou qualquer outra interação. O domínio D não apresenta estruturas secundárias bem definidas, sendo constituído, majoritariamente, por estruturas desordenadas como \"loops\", porém estabilizados por 7 pontes dissulfeto e por dois íons cálcio. A região do motivo ECD está localizada em um \"loop\" e é estruturalmente relacionado à região RGD das desintegrinas-RGD, derivadas de SVMPs da classe P-II. O motivo ECD é estabilizado pela ponte dissulfeto Cys277-Cys310 (entre os domínios D e C), além de um íon cálcio. A cadeia lateral do Glu276 do motivo ECD está exposta ao solvente. Na bothropasina, a região hiper variada (em inglês HVR), descrita para outras P-III de SVMPs, presente no domínio C, de fato, é bastante conservada quando comparada a outros membros da classe P-III de diversas espécies. Nós propomos que esse subgrupo deva ser referido como PIII-HCR (região altamente conservada) SVMPs. Ainda é proposto que as diferenças estruturais dos domínios D, C ou DC possam estar envolvidas em uma melhor adaptação da estrutura na interação com diferentes alvos, além do reconhecimento e especificidade a um substrato para o domínio M. / Bothropasin is a 48kDa hemorrhagic P-III metalloprotease isolated from the venom of the Brazilian snake Bothrops jararaca, which has the disintegrin (D) and cysteine-rich (C) adhesive domains. We present the crystal structure of the bothropasin complexed with the inhibitor POL647. The catalytic domain, metalloprotease (M), consists of two subdomains in a very similar scaffold to the ones described for other snake venom metalloproteases (SVMPs) including the zinc and calcium binding sites. The free cysteine, residue Cys189, is in a hydrophobic core and it is not available for disulfide bonding or other interactions. The D domain does not have a defined secondary structure, but instead is composed by mostly loops stabilized by seven disulfide bonds and by two calcium ions. The ECD region is in a loop and it is structurally related to the RGD region of RGD-disintegrins, which are derived from P-II SVMPs. The ECD motif is stabilized by the Cys277-Cys310 disulfide bond (between D and C domains) and by one calcium ion. The side chain of the Glu276 of the ECD motif is solvent exposed. In bothropasi, the HVR (hyper-variable region) described for other P-III SVMPs in the C domain in fact presents a well conserved sequence with respect to several other P-III members from different species. We propose that this subset be referred to as PIII-HCR (highly-conserved region) SVMPs. We further propose that the structural differences in the D, C or DC domains may be involved in selecting target binding which in turn could generate substrate diversity or specificity for the M domain.
6

Estrutura tridimensional da bothropasina, uma metaloprotease/desintegrina do veneno de bothrops jararaca / The three-dimensional structure of bothropasin, the main hemorrhagic factor from bothrops jararaca venon

João Renato Carvalho Muniz 21 September 2007 (has links)
A bothropasina é uma proteína hemorrágica de 48 kDa, pertencente à classe P-III das metaloproteases, isolada a partir do veneno bruto da serpente brasileira Bothrops jararaca, e que possui os domínios adesivos desintegrina (D) e rico em cisteína (C). Neste trabalho, nós apresentamos a estrutura cristalográfica da bothropasina complexada ao inibidor POL647. O domínio catalítico , metaloprotease (M), pode ser dividido em dois subdomínios, dispostos de maneira muito similar aos descritos para essa família de metaloproteases de venenos de serpentes (em inglês \"SVMPs\"), que inclui os sítios de ligação ao zinco e ao cálcio. A cisteína livre, resíduo Cys189, está localizado em um núcleo hidrofóbico e, sendo assim, impossibilitado de fazer pontes dissulfeto ou qualquer outra interação. O domínio D não apresenta estruturas secundárias bem definidas, sendo constituído, majoritariamente, por estruturas desordenadas como \"loops\", porém estabilizados por 7 pontes dissulfeto e por dois íons cálcio. A região do motivo ECD está localizada em um \"loop\" e é estruturalmente relacionado à região RGD das desintegrinas-RGD, derivadas de SVMPs da classe P-II. O motivo ECD é estabilizado pela ponte dissulfeto Cys277-Cys310 (entre os domínios D e C), além de um íon cálcio. A cadeia lateral do Glu276 do motivo ECD está exposta ao solvente. Na bothropasina, a região hiper variada (em inglês HVR), descrita para outras P-III de SVMPs, presente no domínio C, de fato, é bastante conservada quando comparada a outros membros da classe P-III de diversas espécies. Nós propomos que esse subgrupo deva ser referido como PIII-HCR (região altamente conservada) SVMPs. Ainda é proposto que as diferenças estruturais dos domínios D, C ou DC possam estar envolvidas em uma melhor adaptação da estrutura na interação com diferentes alvos, além do reconhecimento e especificidade a um substrato para o domínio M. / Bothropasin is a 48kDa hemorrhagic P-III metalloprotease isolated from the venom of the Brazilian snake Bothrops jararaca, which has the disintegrin (D) and cysteine-rich (C) adhesive domains. We present the crystal structure of the bothropasin complexed with the inhibitor POL647. The catalytic domain, metalloprotease (M), consists of two subdomains in a very similar scaffold to the ones described for other snake venom metalloproteases (SVMPs) including the zinc and calcium binding sites. The free cysteine, residue Cys189, is in a hydrophobic core and it is not available for disulfide bonding or other interactions. The D domain does not have a defined secondary structure, but instead is composed by mostly loops stabilized by seven disulfide bonds and by two calcium ions. The ECD region is in a loop and it is structurally related to the RGD region of RGD-disintegrins, which are derived from P-II SVMPs. The ECD motif is stabilized by the Cys277-Cys310 disulfide bond (between D and C domains) and by one calcium ion. The side chain of the Glu276 of the ECD motif is solvent exposed. In bothropasi, the HVR (hyper-variable region) described for other P-III SVMPs in the C domain in fact presents a well conserved sequence with respect to several other P-III members from different species. We propose that this subset be referred to as PIII-HCR (highly-conserved region) SVMPs. We further propose that the structural differences in the D, C or DC domains may be involved in selecting target binding which in turn could generate substrate diversity or specificity for the M domain.
7

Tartrate-resistant acid phosphatase: three-dimensional structure and structure-based functional studies:studies on the enzyme using recombinant protein produced by baculovirus expression vector system in insect cells

Kaija, H. (Helena) 13 September 2002 (has links)
Abstract Osteoporosis is a disease characterized by abnormalities in the amount and architectural arrangement of bone tissue, which leads to impaired skeletal strength and increased susceptibility to fractures. Type 5 tartrate-resistant acid phosphatase (TRACP, AcP5) has been suggested to participate directly in bone resorption. In this study, baculovirus expression vector system in insect cells was used to gain large amounts of recombinant type 5 acid phosphatase for structure determination, structure-based functional studies and production of monoclonal antibodies. Active and inactive forms of the enzyme were separated from each other by cation-exchange chromatography, and characterized. The enzyme was crystallized and the three-dimensional structure was determined. Based on the three-dimensional structure of the active site five different enzyme variants were constructed, produced in insect cells, and purified. The wild type enzyme and the mutated forms were characterized, and their kinetic parameters were determined. The importance of amino acids that were expected to be essential for the acid phosphatase activity was confirmed. The acid phosphatase activity and reactive oxygen species generating activity of this dual enzyme proved to exploit different amino acids in their reaction mechanisms. Further studies are needed to clarify the physiological substrates of TRACP in vivo. The findings of this study could form a base for construction of inhibitors for TRACP that could be useful therapeutic agents for osteoporosis and related bone disorders.
8

ESTUDOS ESTRUTURAIS DA ENZIMA HISTIDINA AMÔNIO LIASE DE Trypanosoma cruzi

Miranda, Robson Rodrigo 10 March 2015 (has links)
Made available in DSpace on 2017-07-24T19:37:52Z (GMT). No. of bitstreams: 1 Robson Rodrigo Miranda.pdf: 3117830 bytes, checksum: 06e1c7195d09d214dbcc6eeb5412efe4 (MD5) Previous issue date: 2015-03-10 / Chagas disease is one of the seventeen neglected tropical diseases according to the World Health Organization. In the recent decades, new parasite metabolic pathways were identified, what brings perspectives for the development of more specific and less toxic drugs, towards crucial target pathways. Once the therapeutic target is identified, a structural and biochemical characterization of the enzymes involved becomes necessary. It may be speculated that one possible therapeutic target to combat Chagas disease is the Histidine Ammonia-Lyase enzyme, which participates in the catabolic pathway of histidine. Therefore, in order to contribute to the structural and biochemical understanding of this enzyme, their heterologous production in E. coli was performed. The product protein was purified by affinity chromatography and used in various techniques for initial characterization. The activity was determined by kinect assay, the thermal stability and secondary structure content were investigated by Circular Dichroism (CD) and the oligomerization stated in solution was analyzed by Dynamic Light Scattering (DLS). The X ray diffraction technique was used to elucidate the three dimensional structure. TcHAL was expressed and purified satisfactorily. The activity proved adequate protein folding and the Circular Dichroism indicated a predominance of α-helix secondary structure and the start of the thermal denaturation at 68°C. TcHAL was crystallized and provided suitable diffraction patterns for the 3D structure elucidation. These biochemical and structural studies advanced the understanding of this enzyme and of the inhibition potentialities. / A Doença de Chagas é uma das dezessete doenças tropicais negligenciadas de acordo com a Organização Mundial da Saúde. Nas últimas décadas foram descritas novas vias metabólicas deste parasita, o que abre perspectivas para o desenvolvimento de medicamentos mais específicos e menos tóxicos, para vias cruciais como alvo. Uma vez identificado o alvo terapêutico, passa a ser necessária a caracterização estrutural e bioquímica das enzimas envolvidas. Especula-se como alvo terapêutico para combater a Doença de Chagas a enzima Histidina Amônio Liase, que participa da via catabólica da histidina. Sendo assim, visando contribuir com o entendimento estrutural e bioquímico desta, foi realizada a sua produção heteróloga em E. coli. Esta foi purificada por cromatografia de afinidade e utilizada em diversas técnicas para caracterização inicial. A atividade foi determinada em ensaio cinético, a estabilidade térmica e as estruturas secundárias foram investigadas por Dicroísmo Circular (CD) e o estado de oligomerização em solução foi analisado por Espalhamento Dinâmico de Luz (DLS). A técnica de difração de raios X foi empregada para elucidação da estrutura tridimensional. A TcHAL foi expressa e purificada de maneira satisfatória. A atividade revelou um adequado enovelamento protéico e o Dicroísmo Circular indicou predominância de estruturas secundárias hélices-α e início da desnaturação térmica próximo a 68 °C. A TcHAL foi cristalizada e forneceu padrões de difração suficientes para elucidação da estrutura 3D. Os estudos bioquímicos e estruturais avançaram o entendimento desta enzima e das possibilidades de sua inibição.
9

ESTUDOS ESTRUTURAIS POR CRISTALOGRAFIA E MODELAGEM COMPUTACIONAL DA LIPASE DE PINHÃO MANSO (Jatropha curcas) E DA TRIOSE FOSFATO ISOMERASE DE Naegleria gruberi

Penteado, Renato Ferras 09 August 2016 (has links)
Made available in DSpace on 2017-07-24T19:37:55Z (GMT). No. of bitstreams: 1 Renato Ferraz Penteado.pdf: 5510615 bytes, checksum: a1e326883a6f1e7ad0decd6835add201 (MD5) Previous issue date: 2016-08-09 / Coordenação de Aperfeiçoamento de Pessoal de Nível Superior / Knowledge of protein structures is of huge importance, since this information allows to understand the mechanisms through which proteins carry out their biological functions. Lipases constitute an enzymatic family capable to perform synthesis or hydrolysis of ester bonds of triacyl glycerols (TAGs) with long chain fatty acids.These enzymes are the theme of many investigations given their potential to be used in a wide variety of apllications involving chemicals with the ester functional group,e.g., in organic synthesis. On the other hand, structural knowledge of some enzymes is important for the development of new therapeutic drugs or even to contribute for the understanding of structural evolutionary features, like those belonging to metabolic pathways. In this work were accomplished the homology modeling of the lipase from Jatropha curcas and the structure determination of the triosephosphate isomerase from Naegleria gruberi from three X ray diffraction data sets. Among three experimental structures obtained, two belong to C2 space group, with different unit cells, and one to P4122 space group. Initial phases were obtained by molecular replacement procedure using the Phaser program and all structures were refined interactively with Coot and Phenix programs. In one structure it was possible to model three molecules of the precipitant agent Jeffamine present in the crystallization solution and one molecule of Tris buffer (placed at the active site). Structural comparisons were performed among the refined and validated model and some of its homologues, taking into account the differences observed in the structural-based alignment among them and characteristics noticed during the refinement procedure. Circular dichroism experiments have shown that thermal denaturation is irreversible to triosephosphate isomerase of Naegleria gruberi. / O conhecimento da estrutura de proteínas é de grande importância, uma vez que esta informação permite o entendimento dos mecanismos pelos quais elas desempenham suas funções biológicas. Lipases constituem uma família enzimática capaz de realizar a síntese ou hidrólise de ligações éster de substratos triacilgliceróis (TAGs) contendo ácidos graxos de cadeia longa. São alvo de muitos estudos dadas suas potencialidades em um grande número de aplicações envolvendo o grupo funcional éster, por exemplo, em química orgânica síntética. Já o conhecimento estrutural de algumas enzimas é importante para o desenvolvimento de novas drogas terapêuticas ou mesmo contribuir para o entendimento de aspectos evolutivos estruturais, como daquelas pertencentes a vias metabólicas. Neste trabalho foram realizadas a modelagem por homologia da estrutura lipase da planta Jatropha curcas e a determinação experimental da estrutura da triose fosfato isomerase do microrganismo Naegleria gruberi a partir de três conjuntos de imagens de difração de Raios X. Das três estruturas experimentais obtidas, duas pertencem ao grupo de espaço C2, com células unitárias diferentes, e uma ao grupo de espaço P4122. As fases iniciais foram obtidas com o procedimento de substituição molecular utilizando o programa PHASER e todas as estruturas foram refinadas iterativamente com o auxílio dos programas COOT e PHENIX. Em uma das estruturas foi possível modelar três moléculas do agente precipitante Jeffamine® presente na condição de cristalização e uma molécula do tampão Tris (no sítio ativo do monômero B). Comparações estruturais foram realizadas entre o modelo refinado e validado e algumas das proteínas homólogas, tendo em vista diferenças observadas no alinhamento baseado em estrutura entre elas e características notadas durante o procedimento de refinamento. Experimentos de dicroísmo circular mostraram que a desnaturação térmica é irreversível para esta proteína.
10

Triaxial galaxy clusters / Amas de galaxies triaxiaux

Bonamigo, Mario 22 September 2016 (has links)
Il est bien établit théoriquement et observationnellement que les amas de galaxies ne sont pas des objets sphèriques, et qu'ils sont beaucoup mieux décrits par la géométrie triaxiale. Malgré cela, les travaux sur la forme tri-dimensionnelle des amas de galaxies sont encore trés rares. L'objet de cette thèse est de contribuer à cette problématique naissante. L'originalité de ce travail est d'aborder ce sujet théoriquement et observationnellement. J'ai mesuré la forme d'amas de galaxies simulés, proposant des prédictions sur la forme des haloes de matière noire. J'ai ensuite développé un algorithme qui se propose de combiner des données en lentilles gravitationnelles et en rayons X afin de contraindre un modèle de haloe triaxial. L'algorithme est testé sur des données simulées. Finalement, je présente l'analyse en rayons X de Abell 1703, qui, combinée avec l'analyse en lentilles gravitationnelles, permettra de déterminer la forme de Abell 1703. / It is well established both theoretically and observationally that galaxy clusters are not spherical objects and that they are much better approximated as triaxial objects. This thesis focusses on the three dimencional shape of galaxy clusters. The originality of my approach is to tackle the problem both theoretically and observationally. First, I have measured the shape of dark matter haloes in the Millenium XXL and Sbarbine simulations, providing predictions for dark matter halo shape over 5 order in magnitude in mass. Then, I have developed an algorithm aimed at fitting simultaneously lensing and X-ray data in order to constrain a triaxial mass distribution. The algorithm is tested and characterized on mock data sets. It is found to be able to recover the input parameters. Finally, I present the X-ray analysis of galaxy cluster Abell 1703, which will be combined with the existing lensing analysis in order to investigate its shape.

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