Please read the abstract in the section 00front of this document / Thesis (DPhil (Zoology))--University of Pretoria, 2007. / Zoology and Entomology / unrestricted

In Western Europe the incidence of tick-borne encephalitis (TBE) has increased over the last 30 years, coupled with changes in distribution. Modifications in the TBE enzootic cycle, through a combination of changes in temperature, vertebrate abundance and habitat suitability may have increased the risk of TBE in recent years. In Switzerland, analysis using satellite-derived climate data demonstrated that the environment of areas with TBE since the 1980s and areas that recently became endemic for TBE have become more similar between 2001 and 2009. This was coupled with an increase in April, May and June temperature, which could have affected the tick population and/or human exposure to ticks. Deer and boar abundance also changed in some cantons. In Germany, spatio-temporal modelling demonstrated the importance of temperature, vertebrate abundance and unemployment in the incidence and distribution of TBE between 2001 and 2009. Changes in TBE reporting, April, May and June temperature, vertebrate abundance and pesticide use may have contributed to increases in TBE in 1992 and 2001. Human exposure patterns, however, appear to be as important as the enzootic cycle in shaping the incidence of TBE, not only in determining the overall trend but also in interacting with the weekly, seasonal and yearly patterns of tick hazard to give the observed incidence. In Switzerland, in weeks with warm, sunny weather, human exposure to ticks is promoted and short-term increases in tick bites are seen. Human outdoor activity also shifts the seasonal pattern of tick bites, when compared with tick questing. There was no apparent increase in time spent in outdoor activities between the 1990s and 2000s in Italy, Germany and Austria, but survey data demonstrated that walking and hiking were already popular activities across Europe by the 1990s. The popularity of mushroom and berry foraging as a source of income in Latvia, Lithuania and Poland, coupled with the expense of vaccination, provide an inverse link between economic wellbeing and TBE risk. Correspondingly, in 2009, the economic recession was associated with an increase with TBE in these three countries.

Ticks and tick borne-diseases (TBD) are major challenges to cattle production among smallholder farmers in the semiarid areas of South Africa. Nguni cattle have been reported to be resistant to ticks and TBD, however, the mechanisms responsible for the trait are not fully understood. The broad objective of this study was to determine the mechanisms of resistance to ticks in Nguni cattle reared in the semiarid areas of South Africa. Tick infestation levels, body condition scores (BCS), packed cell volumes (PCV) and the molecular prevalence of A. marginale were determined in Nguni (n = 70) and local crossbred (n = 79) cattle reared in the semiarid areas of South Africa. Relationships among skin thickness, hair length, coat score and tick counts were assessed in seven to nine month old Nguni (n = 12) and Bonsmara (n = 12) heifers. As a follow up, cutaneous hypersensitivity responses to unfed larval extracts (ULE) of the ticks Rhipicephalus decoloratus and Rhipicephalus microplus were examined in heifers to determine host immunity to the ticks. Tick counts and inflammatory cell infiltrates in skin biopsies from feeding sites of adult R. microplus ticks in nine-month-old Nguni and Bonsmara heifers were also evaluated. The molecular prevalence of A. marginale was similar in the Nguni (47.7 %) and local crossbred (52.3 %) cattle. Nguni cattle suffered less severe losses from and were more vi resilient to A. marginale infection than local crossbreds. Nguni heifers had lower coat scores, hair length and tick counts than the Bonsmara heifers. The relationship between tick counts and coat score was positive and linear in the Nguni (y = 1.90x – 0.40) and quadratic in Bonsmara (y = -7.98x2 + 12.74x - 3.12) heifers. Bonsmara cattle showed a more intense immediate reaction and no delayed hypersensitivity reaction to ULE of Rhipicephalus ticks. Nguni heifers presented a less intense immediate reaction and a delayed hypersensitivity reaction at 72 h post inoculation with ULE of Rhipicephalus ticks. Reactions to R. decoloratus ULE produced a more intense skin response at all time intervals in both breeds than that of R. microplus. Parasitized sites in Nguni heifers had higher (P < 0.05) counts of basophils, mast and mononuclear cells than those in the Bonsmara heifers. Conversely, parasitized sites in Bonsmara heifers had higher (P < 0.05) neutrophil and eosinophil counts than those in the Nguni heifers. Tick count was negatively correlated (P < 0.05) with basophil and mast cell counts. There was a positive correlation between eosinophil counts and tick counts in both breeds, and between tick counts and mononuclear cell counts in the Bonsmara breed. It was concluded that smooth and short coats, delayed type hypersensitivity and cutaneous basophil and mast cell infiltrations are responsible for increased tick resistance in the indigenous Nguni cattle breed of South Africa. / Ph.D. University of KwaZulu-Natal, Pietermaritzburg 2013.

Background: Canine babesiosis is a tick-borne disease causing detrimental health effects on the domestic dogs with huge economic impact on the owners. The most complicated form of canine babesiosis is caused by a pathogenic Babesia rossi parasite. Canine babesiosis induced by B. rossi still remains the cause of mortality and morbidity in South African dogs, yet, the transcriptomic and genomic information of this parasite species is still not available. The transcriptomic and genomic information is essential in the disease development and processes for the design of effective disease control strategies. Consequently, our understanding of the mechanisms underlying the pathogenesis of the different genotypes of B. rossi remains limited. A previous study suggested a relationship between the parasite genotype and the disease phenotype. To date, thirteen B. rossi genotypes have been identified and associated with diverse clinical signs in their hosts. Hence the aim of this study was to sequence RNA from samples representing B. rossi genotypes, 19, 29 and 31, in order to have insight on the overall transcriptome of this parasite and to establish if there would be significant differences among the genotypes. Methodology: To screen for B. rossi positive samples, total DNA was extracted from 20 blood samples collected from sick domestic dogs presented at the Onderstepoort Veterinary Academic Hospital (OVAH). Babesia rossi infections were confirmed using the PCR-Reverse Line Blot (RLB) hybridization assay. Further confirmation of infection status was done by amplification of the B. rossi Erythrocyte Membrane Antigen 1 (BrEMA1) gene in all the DNA samples using qualitative PCR (qPCR), followed by sequencing of PCR products. Subsequently, total RNA was extracted from the 20 B. rossi-infected blood samples collected from the same dogs in which DNA was extracted. Three samples representing B. rossi genotypes 19, 29 and 31 were selected for transcriptome analysis. RNA sequencing was performed using the Illumina HiSeq 2000 to allow transcriptome analysis. De novo assembly was performed independently for all three transcriptomes using the Trinity software. The unigenes generated from specific transcriptome assemblies were subjected to global functional annotation using Blast2GO version 2.8.0 software, followed by KEGG database for annotation of biological pathways, and DAVID version 6.7, for COG classification to predict and classify their functions. Results: The sample representing B. rossi genotype 31 was excluded in the transcriptome analysis due to low RNA mass, which usually compromises the quality of the library used in RNA sequencing.Thus, a total of 26 747 238 and 25 709 627 paired-end reads were obtained from B. rossi genotypes 19 and 29, respectively. De novo transcriptome assembly produced a total of 3019 unigenes, with an average length of 419 bp and N50 of 362 bp in B. rossi genotype 19, and 2727 unigenes with an average length of 441 bp and N50 of 362 in B. rossi genotype 29. A total of 1193 unigenes were common between B. rossi genotype 19 and 29, while 1828 unigenes were exclusively detected in B. rossi genotype 19; and 1534 were specific to B. rossi genotype 29. Between the two B. rossi genotypes, a total of 4553 unigenes were obtained, representing the overall B. rossi transcriptome. From the overall transcriptome, 12.3% (n=558) of the unigenes could be annotated with 53 different gene ontology (GO) functional categories. About 34% (n=1550) of the unigenes represented in the overall transcriptome mapped to 237 KEGG pathways and only 2.5% (114) could be annotated in the COG database. Conclusion: Although, there were no striking differences in the transcriptomes of B. rossi genotypes 19 and 29, this study presents the first transcriptomic resource for B. rossi, which will highly contribute to our genetic understanding of B. rossi and provide a platform for future gene expression studies. Hypothetical proteins identified in this study will require further characterization as they may have a critical role in the biology and pathogenicity of B. rossi parasite. / Life and Consumer Sciences / M. Sc. (Life Sciences)

Orientadores: Luiz Jacintho da Silva, Raquel Silveira Bello Stucchi / Tese (doutorado) - Universidade Estadual de Campinas, Faculdade de Ciências Médicas / Made available in DSpace on 2018-08-18T15:04:22Z (GMT). No. of bitstreams: 1 Angerami_RodrigoNogueira_D.pdf: 7670692 bytes, checksum: f6634d52b90eaf383ed11a180b9179aa (MD5) Previous issue date: 2011 / Resumo: Causada pela bactéria Rickettsia rickettsii e transmitida pelos carrapatos Amblyomma cajennense e Amblyomma aureolatum, a febre maculosa brasileira (FMB), após décadas de aparente silêncio epidemiológico, desde sua reemergência nos anos 80, vem figurando como importante problema de saúde pública no estado de São Paulo, sobretudo, em decorrência da aparente expansão das áreas de transmissão e da elevada letalidade a ela associada. O objetivo principal do presente estudo foi descrever características clínicas e epidemiológicas da FMB a partir da análise retrospectiva de casos confirmados da doença em áreas endêmicas no estado de São Paulo. Foi observado que manifestações inespecíficas como febre, cefaléia, mialgia e exantema, foram os sinais clínicos mais freqüentes e precoces. Embora variáveis, elevadas frequências de fenômenos hemorrágicos (22,9%-77,6%), icterícia (16,7%-52%), alterações neurológicas (27,2%-51,7%) e insuficiência respiratória (17,5%-62%) foram observadas. A taxa de letalidade média no estado de São Paulo no período de 2003 a 2008 foi de 29,6%(21,9%-40%). Trombocitopenia e elevação de transaminases hepáticas foram as alterações laboratoriais mais frequentes, ocorrendo em até 100% dos casos. Na faixa etária pediátrica, a FMB também se apresentou como doença severa, associando-se, embora em menor freqüência, às complicações acima mencionadas e à elevada letalidade (28,4%). Entretanto, em estudo comparativo entre o perfil clínico da FMB nos estados de São Paulo e Santa Catarina, observou-se no estado do Sul uma doença com evolução benigna, pequena frequência de sinais de gravidade e ausência de óbitos. Entre pacientes com FMB, as síndromes febris hemorrágica, icterohemorrágica e exantemática foram as mais comumente observadas (37,1%, 33,9%, 11,3%, respectivamente). Dentre os principais diagnósticos diferenciais da FMB, leptospirose, dengue e doença meningocócica foram as mais prevalentes (28,5%, 17,2%, 5,4%, respectivamente). Em 31% dos casos descartados para FMB não foi possível a identificação do diagnóstico etiológico. A doença foi mais incidente no gênero masculino e entre indivíduos da faixa etária de 20 a 49 anos. Em áreas em que o A. cajennense é o principal vetor foi possível observar maior incidência da doença entre o período de Junho a Setembro. Surtos de FMB se associaram a elevadas taxas de letalidade e a diferentes determinantes ecoepidemiológicos. Atividades de lazer e ocupacionais em áreas de mata, pastagem, próximas a coleções hídricas e/ou com presença de animais (cavalos, capivaras e, eventualmente, cães) foram consideradas importantes exposições de risco para infecção. O presente estudo permitiu observar que a infecção pela R. rickettsii no estado de São Paulo se associa à elevada morbimortalidade, sendo, aparentemente, mais severa que a febre das Montanhas Rochosas nos Estados Unidos. Exantema, icterícia e hemorragias são importantes marcadores clínicos que devem ser considerados na suspeição da doença e seus diagnósticos diferencias. O conhecimento das características epidemiológicas e dos fatores de risco para infecção deve fundamentar as ações de prevenção e controle da FMB. A maior severidade da infecção pela R. rickettsii no estado de São Paulo, a ocorrência de casos atípicos em Santa Catarina e a ausência de elucidação diagnóstica em casos descartados para FMB sugerem que cepas de R. rickettsii com distintos padrões de virulência, bem como outras espécies de riquétsias e, eventualmente, outros microorganismos transmitidos por carrapatos devam estar ocorrendo no Brasil / Abstract: Brazilian spotted fever (BSF) is caused by Rickettsia rickettsii and transmited by Amblyomma cajennense and Amblyomma aureolatum ticks. After decades of an apparent epidemiological silence, BSF reemerged as an important public health problem in São Paulo State in the 1980's, mostly because the possible expansion of its transmission areas and the high BSF related fatality-rate. The main objective of the present study was to describe clinical and epidemiological features of BSF through a retrospective analysis of BSF confirmed cases in endemic areas. Non-specific clinical signs like fever, myalgia, headache, and exanthema were the earliest and most frequent clinical signs. A high frequency of hemorrhagic manifestations (22.9%-77.6%), icterus (16.7%-52%), neurological signs (27.2%-51.7%), and respiratory distress (17.5%-62%) was also observed. Case-fatality ratio in São Paulo State between 2003 and 2008 was 29.6% (21.9%-40%). Thrombocytopenia and elevated liver enzymes were the most frequent laboratorial abnormalities, reaching 100% in some groups. In the pediatric age-group, BSF also presented as a severe disease with a slightly lower rate of clinical complications, but a similar high lethality rate (28.4%). Interestingly, when we compared the clinical profile of BSF cases between São Paulo state and Santa Catarina state, located in the southernmost part of Brazil, a milder disease, with a lower frequency of clinical signs of severity and no fatalities was observed in the latter. The most frequent clinical syndromes occurring in BSF patients were hemorrhagic, ictero-hemorrhagic, and exanthematic acute febrile syndromes (37.1%, 33.9% and 11.3% respectively). The most important differential diagnosis to BSF was leptospirosis, dengue fever, and meningococcal disease (28.5%, 17.2%, and 5.4%, respectively). In 31% of non-confirmed BSF cases, no etiological diagnosis was defined. A higher incidence of BSF was observed in males and in the 20-49 years age-group. In areas where A. cajennense is recognized as the most important vector, a higher BSF incidence was observed from June to September. Clusters of BSF were associated to elevated fatality rates and a wide number of ecoepidemiological determinants. Recreational and occupational activities in rural, periurban, and waterside areas, with presence of animals (mostly horses and capybaras, and eventually dogs) were considered the most important exposure risk factors to infection. The present study suggests a more severe pattern of R. rickettsii in São Paulo state when compared with Rocky Mountain spotted fever in United States. Exanthema, icterus, and hemorrhage are important clinical markers of BSF and should be considered in the suspicion of this disease and as a differential diagnosis. Knowledge of clinical, epidemiological, and risk factors for infection should be used to structure and improve the measures for control and prevention of BSF. Together, the higher severity of R. rickettsii infection in São Paulo state, the occurrence of atypical cases in Santa Catarina, and the unknown etiological diagnosis of a high percentage of post-tick exposure febrile patients suggest that more virulent R. rickettsii strains, other Rickttsiae species and, eventually, other tick-borne diseases could be occurring in Brazil / Doutorado / Clinica Medica / Doutor em Clínica Médica

The purpose of this study was to determine the prevalence of Lyme Disease (LD) bacteria in adult Ixodes pacificus ticks collected from the mountains of San Bernardino County in Southern California. Seven hundred fifty four I. pacificus adults were collected from the Pacific Crest Trail and adjacent areas. The Polymerase Chain Reaction (PCR) was used to screen ticks for Borrelia burgdorferi infection by targeting two different DNA loci. Oligonucleotide primers targeting both the ospA and fla genes were used in the assay. Ticks were processed in pools of three, and genomic DNA from the ticks was extracted with a commercial mini-kit utilizing silica matrix spin-columns. All ticks tested negative for B. burgdorferi infection regardless of primer pair used. In addition, ticks were negative following examination by dark-field microscopy. This study confirms previous reports that the prevalence of LD in Southern California is quite low.

Surveys were conducted to compare the seasonal tick prevalence and loads, and sero-prevalence of tick-borne diseases (TBD) in Nguni and non-descript cattle on the sweet and sour communal rangelands of the Eastern Cape Province. The tick species observed on both rangeland types were Rhipicephalus appendiculatus (71.0 %), Rhipicephalus (Boophilus) species (29.2 %) and Rhipicephalus evertsi evertsi (40.2 %). Hyalomma species (19.0 %) occurred only on the sour rangeland. Tick loads were higher (P < 0.05) in the hot-wet season than in the cool-dry season. Cattle in the sweet rangeland had significantly lower (P < 0.05) tick loads than those in the sour rangeland. Rhipicephalus appendiculatus loads were lower (P < 0.05) in the indigenous Nguni than non-descript cattle in the hot-wet and post-rainy season. Hyalomma species were also significantly lower (P < 0.05) in the Nguni than non-descript cattle in all the seasons. Three TBDs were observed, namely Babesia bovis (44.6 %), Babesia bigemina (45.9 %) and Anaplasma marginale (25.6 %). All the animals were sero-negative for Ehrlichia ruminantium. Nguni cattle had lower (P < 0.05) sero-prevalence for A. marginale in the cool-dry season and B. bigemina in the cool-dry and hot-wet seasons. Cattle in the sweet rangeland had significantly lower sero-prevalence of B. bovis and B. bigemina. Infection with B. bovis and A. marginale decreased (P < 0.05) the packed cell volume. Nguni cattle were recommended for use in the integrated control of ticks and TBD in the communal areas of South Africa as they were better able to cope with tick and TBD infestations than non-descript breeds.

In this paper, I will show how applying a spatially explicit context to an existing environmental health surveillance framework is vital for more complete surveillance of disease, and for disease prevention and intervention strategies. As a case study to test the viability of a spatial approach to this existing framework, the risk of human exposure to Lyme disease will be estimated. This spatially explicit framework divides the surveillance process into three components: hazard surveillance, exposure surveillance, and outcome surveillance. The components will be used both collectively and individually, to assess exposure risk to infected ticks. By utilizing all surveillance components, I will identify different areas of risk which would not have been identified otherwise. Hazard surveillance uses maximum entropy modeling and geographically weighted regression analysis to create spatial models that predict the geographic distribution of ticks in Texas. Exposure surveillance uses GIS methods to estimate the risk of human exposures to infected ticks, resulting in a map that predicts the likelihood of human-tick interactions across Texas, using LandScan 2008TM population data. Lastly, outcome surveillance uses kernel density estimation-based methods to describe and analyze the spatial patterns of tick-borne diseases, which results in a continuous map that reflects disease rates based on population location. Data for this study was obtained from the Texas Department of Health Services and the University of North Texas Health Science Center. The data includes disease data on Lyme disease from 2004-2008, and the tick distribution estimates are based on field collections across Texas from 2004-2008.

No abstract or keywords provided in dissertation / Life and Consumer Sciences / M. Sc. (Life Sciences)

In impoverished and resource limited communities such as townships, and welfare organizations, areas such as living and sleeping spaces are sometimes shared with animals, and occasionally humans. Dogs play an integral role in our lives and have become part of the family. Therefore, it is probable that ectoparasites, such as ticks, that feed on dogs also feed on other vertebrates, thereby, transmitting pathogens. The primary aim of this study was to screen for the presence of tick-borne pathogens in dogs from welfare organisations and townships in Cape Town, with special focus on Ehrlichia and Babesia spp. The reason for this choice of subject is due to the fact that very few tick-borne infection studies have focused on resource limited communities. Furthermore, welfare organisations have continuously attracted awareness due to the amount of unrestricted work performed by veterinarians in communities with limited resources. Consequently, the topic was borne. A total of 126 blood samples and 509 ticks (adults and nymphs) were collected directly from dogs from four welfare organisations and two townships in Cape Town. Samples were collected from April to July 2014. The four welfare organisations where samples were collected included the Animal Anti Cruelty League welfare organisations in Epping and Bellville, the Lucky Lucy Foundation in Joostenberg Vlakte and The Emma Animal Rescue Society (TEARS), located in the Sunnydale area. Samples were also collected from the Asanda village and Nomzamo, two townships located just outside the Cape Town suburb, the Strand. DNA was extracted from blood and ectoparasites and screened for the presence of Ehrlichia, Anaplasma, Theileria and Babesia species infections using touchdown PCR and RLB hybridization assays. Genus and species-specific probes were used during hybridization in order to identify specific parasite infections in the blood samples and the tick samples pooled according to geographical origin and species. Forty six (36.5%) of the blood samples tested positive for tick-borne pathogen DNA. Of the positive blood samples, 17 (13.5%) were infected with Ehrlichia canis; 16 (12.7%) with Babesia rossi and four (3.2%) samples were infected with Babesia vogeli. Incidental infections were also detected, these included Ehrlichia ruminantium (n=6, [4.7%]), Theileria taurotragi (n=2, [1.6%]) and Anaplasma sp. Omatjenne (n=1, [0.8%]) infections. DNA detected from 10 samples (7.94%) hybridized only to the Ehrlichia/Anaplasma genus-specific probes and four samples (3.17%) hybridized only to the Theileria/Babesia genus-specific probes. None of these 14 samples hybridized to any of the species-specific probes. Collected Rhipicephalus sanguineus (n=457) and Haemaphysalis elliptica (n=52) ticks were grouped into 15 pools, representing both tick species according to specific collection locations. Since only two H. elliptica from Asanda and one R. sanguineus from TEARS were collected, these ticks were mixed in pools of the dominant species as they were too few for DNA extraction. Ticks were collected from the Nomzamo Township (R. sanguineus n=400), Asanda village (H. elliptica n=2; R. sanguineus n=42), TEARS (H. elliptica n=21; R. sanguineus n=1), and the Animal Anti Cruelty League in both Epping (R. sanguineus n=14), and Bellville (H. elliptica n=29), in Cape Town. Analysis by the RLB assay showed that 11 (73.3%) of the 15 tick pools representing both tick species were positive for at least one parasite species. All positive samples hybridized with the Ehrlichia/Anaplasma genus-specific probe. Three (20%) tick pools containing both tick species tested positive for Ehrlichia canis infection, two (13.3%) tested positive for Babesia rossi and Babesia vogeli DNA was identified in one (6.6%) tick pool. The Theileria/Babesia genus-specific probe hybridised in three (20%) tick pools. These three pools were comprised of both R. sanguineus and H. elliptica tick species. These tick pools also tested positive for a specific Babesia tick-borne pathogen. Tick-borne pathogen DNA could not be detected in four (26.6%) tick pools. The fore-mentioned tick-borne pathogen DNA detected in the dog blood samples, and the ectoparasites collected from the same dogs during this study, suggests that dogs play a large role in the endemicity of these pathogens / Environmental Sciences / M. Sc. (Life Science)