6-Chloronicotinic acid was coupled by an amide linkage to Merrifield resin or Jeffamine gel. Nucleophilic displacement of the 6-chloride group by hydroxide gave novel Merrifield resin catalyst 6 or Jeffamine gel catalyst 9 that were successfully used for Henry condensations. The condensation of 4,6-O-benzylidene-β-D-glucopyranose 11 with nitromethane gave 4,6-O-benzylidene-D-glucopyranosyl-l-nitromethane 12; the condensation of 11 with nitroethane gave α-R-(4,6-O-benzylidene-β-D-glucopyranosyl)-1-nitroethane 13 and its diastereomer 15; the condensation of 11 with nitropropane, followed by acetylation, gave α-R-(2,3-di-O-acetyl-4,6-O-benzylidene-β- D-glucopyranosyl)-1 -nitropropane 16 and its diastereomer 17; the condensation of 4,6- O-isopropylidene-β-D-glucopyranose 19 with nitromethane gave 4,6-O-isopropylidene- β-D-glucopyranosyl-1-nitromethane 20; the condensation of 4,6-O-isopropylidene-α- D-mannopyranose 21 with nitromethane gave 4,6-O-isopropylidene-β-D-mannopyranosyl- 1-nitromethane 23. These known compounds were obtained with improved yields compared to protocols with 1,3 proton transfer catalysts that were not bound to polymers. A new monomeric 1,3 proton transfer catalyst, 2,4 (1,3)-quinazolinedione 10, was also introduced.

"The need for an efficient, non-polluting power source for vehicles in urban environments has resulted in increased attention to the option of fuel cell powered vehicles of high efficiency and low emissions. Of various fuel cell systems considered, the proton exchange membrane (PEM) fuel cell technology seems to be the most suitable one for the terrestrial transportation applications. This is thanks to its low temperature of operation (hence, fast cold start), and a combination of high power density and high energy conversion efficiency. Besides automobile and stationary applications (distributed power for homes, office buildings, and as back-up for critical applications such as hospitals and credit card centers), future consumer electronics also demands compact long-lasting sources of power, and fuel cell is a promising candidate in these applications. The goal of a cost effective and high performance fuel cell has resulted in very active multidisciplinary research. Although significant progress has been made on PEM fuel cells over the last twenty years, further progress in fuel cell research is still needed before the commercially viable fuel cell utilization in transportation, potable and stationary applications. A chief goal among others is the design of PEM fuel cells that can operate with impure hydrogen containing traces of CO, which has been the objective of this research. Standard Pt and PtRu anode catalyst has been studied systematically under practical fuel cell conditions, in an attempt to understand the mechanism and kinetics of H2/CO electrooxidation on these noble metal catalysts. In the study of Pt as anode catalyst, it was found that the fuel cell performance was strongly affected by the anode flow rate and cathode oxygen pressure. A CO electrooxidation kinetic model was developed taking into account the CO inventory in the anode, which can successfully simulate the experimental results. It was found that there is finite CO electrooxidation even on Pt anode with H2/CO as anode feed. Thus, anode overpotential and outlet CO concentration is a function of anode inlet flow rate at a constant current density. The on-line monitoring of CO concentration in PEM fuel cell anode exit has proved that the ~{!0~}ligand mechanism~{!1~} and ~{!0~}bifunctional mechanism~{!1~} coexist as the CO tolerance mechanisms for PtRu anode catalyst. For PtRu anode catalyst, sustained potential oscillations were observed when the fuel cell was operated at constant current density with H2/CO as anode feed. Temperature was found to be the key bifurcation parameter besides current density and the anode flow rate for the onset of potential oscillations. The anode kinetic model was extended further to unsteady state which can reasonably reproduce and adequately explain the oscillatory phenomenon. The potential oscillations are due to the coupling of anode electrooxidation of H2 and CO on PtRu alloy surface, on which OHad can be formed more facile, preferably on top of Ru atoms at lower overpotentials. One parameter bifurcation and local linear stability analysis have shown that the bifurcation experienced during the variation of fuel cell temperature is a Hopf bifurcation, which leads to stable potential oscillations when the fuel cell is set at constant current density. It was further found that a PEM fuel cell operated in an autonomous oscillatory state produces higher time-averaged cell voltage and power density as compared to the stable steady-state operation, which may be useful for developing an operational strategy for improved management of power output in PEM fuel cells with the presence of CO in anode feed. Finally, an Electrochemical Preferential Oxidation (ECPrOx) process is proposed to replace the conventional PrOx for cleaning CO from reformate gas, which can selectively oxidized CO electrochemically while generating supplemental electrical power without wasting hydrogen."

Thesis (Ph. D.)--University of Washington, 2003. / Vita. Includes bibliographical references (leaves 164-177).

Photosystem II (PSII) is the membrane-bound oxidoreductase peptide complex responsible for the oxidation of water to molecular oxygen and reduction of plastoquinone to plastoquinol. Primary electron transfer is initiated upon absorption of a photon by the primary donor chl resulting in electron transfer and production of a P680+QA charge separated state. P680+ is reduced by YZ (Y161 of the D1 polypeptide subunit), one of two redox-active tyrosine residues found in PSII. This produces a neutral tyrosyl radical (YZ ) which is subsequently reduced by electrons derived from water at the oxygen-evolving complex (OEC). The OEC is composed of four manganese, one calcium ion, and one chloride ion. Four photons are required to convert water to O2, each photon advancing the OEC through successive oxidation states or S states. The exact chemical mechanism of water oxidation in PSII is not known. However, proton-coupled electron transfer (PCET) is thought to be one of the fundamental steps in driving the extraction of electrons and protons from water. Here, the mechanism of water oxidation is investigated with focus on PCET events using vibrational spectroscopy. Vibrational spectroscopy is sensitive to changes in protein structure, charge, and hydrogen bonding, and is ideal for the study of fast events coupled with light-induced electron transfer. The results presented here demonstrate the utility of time-resolved infrared spectroscopy in the detection of intermediates of photosynthetic water oxidation. We suggest that proton transfer may precede manganese oxidation during water oxidation based on time-resolved infrared and difference FT-IR spectroscopic results. The mechanism of PCET associated with YZ reduction is investigated. Using reaction-induced difference FT-IR spectroscopy, the identity of the chloride binding site is speculated through the use of bromide exchange at the OEC. Also, proton transfer reactions at the OEC are investigated using azide as a vibrational probe. The advances in the understanding of photosynthetic water oxidation gained in this work will aid in the elucidation of the chemical mechanism of this important reaction. Understanding the details of photosynthetic water oxidation will assist in the development of technology aimed at harnessing the energy of the sun for the benefit of humankind.

Thesis (Ph. D.)--Ohio State University, 2005. / Title from first page of PDF file. Includes bibliographical references (p. 164-174).

Le nombre de cibles potentielles pour la conception de nouvelles molécules à activité thérapeutique ne cesse de croître. Pour chaque cible, il est nécessaire d’identifier des molécules actives et de les optimiser afin d’atteindre l’affinité et la sélectivité recherchées. Ces nouveaux défis accentuent la nécessité d’améliorer notre compréhension des facteurs qui mènent à la reconnaissance moléculaire entre une drogue potentielle et une macromolécule biologique, et particulièrement des facteurs énergétiques à la base de la stabilisation d’un complexe d’interaction. Dans le cadre de ce travail, nous nous sommes intéressés à l’effet que pouvaient avoir les équilibres de protonation/déprotonation des résidus ionisables d’une protéine sur les paramètres thermodynamiques caractérisant la complexation d’un ligand. Dasns ce but, nous avons étudié l’interaction entre l’α-chymotrypsine et un de ses inhibiteurs compétitifs, la proflavine. Cette protéine est représentative d’un nombre important d’enzymes présentant le même mécanisme catalytique. La compréhension des facteurs qui régissent les équilibres de protonation/déprotonation des résidus ionisables présents dans son site actif ainsi que de l’effet sur ceux-ci de l’interaction avec des ligands est d’une importance primordiale pour le développement d’inhibiteurs plus sélectifs de ces protéases.<p>Cette étude s’est essentiellement composée de trois volets. (i) La réalisation d’un modèle du complexe d’interaction afin de confronter des données structurales aux données expérimentales recueillies. (ii) L’étude de l’interaction entre l’α-chymotrypsine et la proflavine par spectroscopie de Résonance Magnétique Nucléaire (RMN) afin de mettre en évidence les résidus ionisables dont les équilibres de protonation/déprotonation sont influencés par la complexation du ligand. (iii) L’étude de la thermodynamique de l’interaction par Calorimétrie à Titrage Isotherme (ITC) et spectroscopie d’absorption en fonction de l’état d’ionisation des résidus identifiés par l’étude RMN.<p>Le modèle du complexe d’interaction entre l’α-chymotrypsine et la proflavine a été réalisé sur base de la structure cristallographique du complexe entre cet inhibiteur et une protéase apparentée à la chymotrypsine, la thrombine. Il ressort de l’analyse du modèle obtenu que la proflavine est profondément enfouie dans le subsite S1 de l’enzyme et présente une très grande complémentarité de surface avec cette poche hydrophobe. Nous avons également pu constater la présence de plusieurs molécules d’eau immobilisées au sein du complexe, et d’une molécule en particulier faisant office de relais de liens-H.<p>L’étude de l’interaction entre l’α-chymotrypsine et la proflavine par RMN du 1H a été précédée par une étude de l’effet du degré de maturité de l’enzyme sur les interactions liant les différents résidus composant la triade catalytique (Asp102, His57 et Ser195). Lors de l’activation du précurseur inactif de l’enzyme, le chymotrypsinogène, vers la forme mature, l’α-chymotrypsine, il semble en effet que le lien-H entre le NH&949;2 de l’His57 et le Oγ de la Ser195 soit affaibli, contrairement à celui qui relie le NHδ1 de cette même histidine au Oδ1 de l’Asp102. Nous rapportons pour la première fois l’observation de l’influence de la protonation de l’Asp102 sur les déplacements chimiques des protons NHδ1 et NH&949;2 de l’His57. L’étude de l’interaction entre l’α-chymotrypsine et la proflavine par RMN, nous a permis de mettre en évidence l’effet de la complexation du ligand sur l’état d’ionisation des résidus His57 et Asp102 de la triade catalytique, les pKa de ces résidus dans l’enzyme libre valant respectivement 7 et approximativement 4.<p>Les paramètres thermodynamiques de l’interaction α-chymotrypsine - proflavine et des différents équilibres de protonation/déprotonation qui y sont liés ont été obtenus par spectroscopie d’absorption et ITC. Cette dernière technique constitue un outil précieux pour l’étude d’interactions moléculaires car il s’agit de la seule technique expérimentale permettant la mesure directe de l’enthalpie d’interaction. Lorsque des équilibres de protonation/déprotonation sont thermodynamiquement liés à l’interaction, il s’agit également de la seule technique permettant la quantification de ces effets. En mesurant la constante d’affinité et l’enthalpie d’interaction observées à différents pH et dans différents tampons, nous avons pu, sur base du modèle obtenu par RMN, déterminer les paramètres thermodynamiques intrinsèques des différents équilibres.<p>La corrélation entre les données thermodynamiques obtenues par ITC et spectroscopie d’absorption et les données structurales obtenues par RMN et sur base de l’analyse du modèle du complexe d’interaction, nous a permis de rationaliser les facteurs à la base de l’interaction préférentielle de l’inhibiteur avec une des formes de l’enzyme. L’interaction entre l’α-chymotrypsine et la proflavine est la plus favorable lorsqu’à la fois l’His57 et l’Asp102 sont déprotonnés. Cette interaction est caractérisée par un terme enthalpique favorable et un terme entropique légèrement défavorable. Ce dernier terme s’expliquerait en partie par l’immobilisation dans le site d’interaction de plusieurs molécules d’eau. L’affinité entre l’α-chymotrypsine et la proflavine diminue lorsque l’His57 se protonne. La répulsion électrostatique entre les charges positives de la proflavine et de l’His57 est vraisemblablement un des facteurs permettant d’expliquer cette diminution de la constante d’affinité. Nous n’avons pu mettre en évidence d’interaction entre ces deux molécules dès lors que l’Asp102 est protonné, malgré que ce résidu soit situé relativement loin de la proflavine dans le complexe. Il s’agit donc d’un effet indirect, probablement relayé par l’His57. Tant que l’Asp102 est déprotonné, sa charge négative compenserait la charge positive de l’His57 et réduirait la répulsion électrostatique avec la proflavine, ce qui n’est plus le cas lorsque l’aspartate se protonne. / Doctorat en sciences appliquées / info:eu-repo/semantics/nonPublished

Foram medidas distribuições angulares do espalhamento elástico 17O + p e da reação de transferência p(17O,a)14N nas energias ECM = 1,39 e 2,33 MeV. Foi utilizado feixe de 17O produzido no Laboratório Pelletron, com energias de 25 e 42 MeV. As medidas foram efetuadas utilizando-se alvos plásticos de mylar aluminizado (C10H10O4) e polietileno (CH2) com espessuras de 354µg/cm² e 6mg/cm², respectivamente. As distribuições angulares experimentais do espalhamento elástico e da reação de transferência foram analisadas por cálculos de Modelo Óptico e Aproximação de Born de Ondas Distorcidas (DWBA), ambos levando em conta uma estimativa da contribuição do núcleo composto através de cálculos de Hauser-Feshbach. Em 42 MeV, foi medida uma função de excitação do espalhamento elástico utilizando o Método de Espalhamento Ressonante com alvo grosso de (CH2). Várias ressonâncias do núcleo composto 18F são observadas. / Angular distributions of the elastic scattering 17O + p and of the transfer reaction p(17O, a)14N have been measured at the energies, ECM = 1.39 and 2.33 MeV. The 17O beam was produced by the Pelletron accelerator at the energies of 25 and 42 MeV. The measurements have been performed using plastic targets of aluminized mylar (C10H10O4) and polyethylene (CH2) with thicknesses 354µg/cm² and 6mg/cm², respectively. The experimental angular distributions of the elastic scattering and of the transfer reaction have been analyzed by optical model and Distorted Waves Born Approximation (DWBA) calculations, both taking into account the compound nucleus contribution via Hauser-Feshbach calculations. At 42 MeV, an excitation function of the elastic scattering has been measured using the Resonant Scattering Method with thick targets of (CH2). Resonances in the 18F compound nucleus are observed.

Um die Funktion von Proteinen in ihrer natürlichen Umgebung zu verstehen, ist es unerlässlich ihre Lokalisation und Bewegung im lebenden System durch z.B Fluoreszenz-markierung sichtbar zu machen. Eine ideale Markierungsmethode zeichnet sich dadurch aus, dass sie das Zielprotein (protein of interest, POI) selektiv und in kurzer Zeit mit einer maßgeschneiderten Reportergruppe ausstattet, ohne die Proteinfunktion und -lokalisation zu beeinflussen. Dabei ist die Größe der Erkennungssequenz von großer Bedeutung. In dieser Arbeit wird die Entwicklung einer Markierungsstrategie beschrieben, bei der die Ausbildung eines parallelen Coiled-Coil-Motivs den Transfer einer Reportergruppe auslöst. Untersucht wurde dabei die Übertragung eines Sulfonat-gebundenen Fluorophors auf ein Cystein in der Erkennungssequenz durch nukleophile Substitution. Ebenfalls untersucht wurde der Transfer verschiedener Thioester-verknüpfter Reporter auf ein N-terminales Cystein der Erkennungssequenz durch eine Acyltransferreaktion. Beide Strategien zeichnen sich durch eine hohe Selektivität und einen geringen Massenzuwachs am Zielprotein aus. Der Acyltransfer mit Arylthioestern zeigte zudem eine bemerkenswerte Reaktivität und erlaubte eine Markierung innerhalb weniger Minuten Reaktionszeit. Die Vielfältigkeit dieser Methode wurde anhand der Fluoreszenzmarkierung von sieben verschiedenen G-Protein gekoppelten Membranrezeptoren auf der Oberfläche lebender Zellen demonstriert. Die markierten Rezeptoren blieben dabei funktional und konnten ihren entsprechenden Liganden mit hoher Affinität binden. / In order to understand the function of proteins in their native environment, it is crucial to visualize their localization and trafficking in living cells by means of e.g. fluorescence labeling. An ideal labeling method adds a custom reporter group to the protein of interest (POI) in a selective and fast manner without disturbing the POIs function and localization. Hence the size of the recognition sequence is of major concern. This work describes the development of a labeling strategy in which the formation of a parallel coiled coil motif triggers the transfer of a reporter group. The transfer of a sulfonate-linked fluorescence dye onto the cysteine-modified recognition sequence via a nucleophilic substitution reaction was tested. Also the transfer of various thioester-linked reporters onto the N-terminal cysteine of the recognition sequence via an acyl transfer reaction was investigated. Both strategies are characterized by a high selectivity and low mass increase at the target protein. The acyl transfer with aryl thioesters also showed a remarkable reactivity and allowed labeling reactions to proceed within minutes. The versatility of this method was demonstrated by applying it to the labeling of seven different G-protein coupled membrane receptors on the surface of living cells. The labeled receptors remained functional and were able to bind their respective ligand with high affinity.

Proton coupled electron transfer reactions often involve tyrosine residues, because when oxidized, the phenolic side chain deprotonates. Tyrosine Z (YZ) is responsible for extracting electrons in a stepwise fashion from the oxygen evolving-complex in order to build enough potential to oxidize water. This process requires that each step YZ must deprotonate and reprotonate in order to maintain the high midpoint potential that is necessary to oxidize the oxygen-evolving complex, which makes YZ highly involved in proton coupled electron transfer reactions. In this thesis YZ has been studied within oxygen-evolving photosystem II utilizing electron paramagnetic resonance spectroscopy to monitor the tyrosyl radical that is formed upon light excitation. Kinetic analysis of YZ has shed light on the factors that are important for PSII to carry out water oxidation at the oxygen-evolving complex. Most notably the strong hydrogen-bonding network and the midpoint potential of YZ have been shown to be integral aspects of the water splitting reactions of PSII. By studying YZ within oxygen-evolving PSII, conclusions are readily applied to the native system.

N-methyl-6-hydroxyquinolinium (NM6HQ) is a powerful excited-state proton donor, exhibiting a huge pKa drop from 7.2 in the ground state to -7 in the excited state. The zwitterionic nature of the proton transfer product encourages intramolecular electron transfer away from the hydroxyl moiety to the distal ring, allowing for a large pKa jump in the excited state. This process is reversible, making the NM6HQ salts powerful transient superacids. We have investigated the excited-state proton transfer (ESPT) from NM6HQ salts to various basic solvents (alcohols, DMSO). A model has been developed that adequately describes the ion-dipole interactions in the ESPT geminate-recombination process. Our studies have shown that the counterion plays a large role in the ESPT. Likewise, initiation of cationic polymerization is controlled by the counterion. NM6HQ perfluoroalkylsulfonates appear to be the first molecules reported which are capable of initiating aliphatic epoxide polymerization at room temperature through a proton transfer mechanism.