This thesis fills a research gap in our knowledge of kokako song by looking at how song evolves in multi-dialect areas. Kokako only exist in small remnant populations separated by large tracts of unsuitable land. Kokako are very poor flyers, only able to fly for approximately 100 metres at a time. In order to prevent inbreeding and a loss of genetic diversity in the remaining kokako populations, managers are carrying out translocations to establish new populations, maintain gene flow and prevent inbreeding. However, these translocations have the potential to be unsuccessful because kokako exhibit macrogeographic variation in their dialects, and tend not to breed with individuals who do not share the same dialect as them. If the purpose of the translocation is to enhance genetic diversity by having kokako from different areas breed then song is an important factor that must be dealt with. Song is extremely important to kokako for a number of reasons. Chiefly, it is hypothesised that song is their primary means of territory defence. A kokako gains all its resources from its territory, so it is imperative that they successfully defend it. Their duet song functions in territory defence, but also acts to form and maintain pair bonds. In order to try and address the problem that song causes in translocations I studied if and how song evolves in a multiple dialect area. I conducted research at Pukaha Mount Bruce, where there is a population of kokako originating from two different source populations, and thus two different dialects, Northern Mapara and Mangatutu. I looked at the Northern Mapara dialect, and recorded kokako belonging to three groups; kokako currently living in the source population, kokako that were translocated to Pukaha and kokako that were born at Pukaha. In order to determine how the song may be changing I looked at element repertoires, the levels of sharing between groups, the number of unique elements in repertoires and the syntactical and temporal characteristics of phrases. This study shows that translocation into multiple dialect areas can affect kokako song. Translocation did not affect the size of the kokako repertoire, but it seemed to affect the amount of sharing within and between different groups of kokako. Currently the level of sharing within the groups at Pukaha is lower than the level of sharing within the source Mapara population, indicating that the song may be diverging. There also seem to be more unique elements found at Pukaha, which in part explains the lack of sharing. There appears to be microgeographic variation at Pukaha, with birds clustered around the second (Mangatutu) dialect sharing less with the source population than do those kokako whose territories are lower down in the reserve. The phrases which are used are also evolving, with only one phrase truly shared among all groups. There are other phrases which show additions or deletions of elements, and so are evolving. The main change found in the phrases is the timing between elements, with six out of seven phrases examined showing changes. These results have repercussions for future kokako translocations, and the future of the Pukaha kokako. A low amount of phrase and element type sharing combined with changes of intra-phrase timing could lead to the Pukaha kokako’s inability to successfully defend their territories. This research shows how kokako song can give conservation managers information on the status of their populations in regards to interbreeding and raises questions which can be answered by further research, both at Pukaha and in other mixeddialect kokako populations.

<div> <div> <div> <p>Billions of birds migrate annually between breeding and wintering habitats, following transient resources. Though a majority of time is spent in breeding and wintering habitats, habitats used during the migratory periods are especially important for migrating birds. Migration and stopovers, where birds rest and refuel before continuing a migratory journey, are critical points in a bird’s annual lifecycle, and are important ecologically, socially, and economically. Populations of migratory birds are declining on a global scale, however, and proper management is vital to their persistence in an urbanizing environment. Indiana in the Midwestern United States is an important area in which to study stopover ecology of migratory birds, as it is a fragmented forest- urban-agricultural matrix almost entirely managed through private ownership. In this dissertation, I studied three questions of stopover ecology within the landscape context of the Midwestern United States, primarily using weather surveillance radar and eBird citizen science data. </p> <p><br></p><p>First, I studied spatiotemporal changes over an 11-year period (autumn 2005-2016 and spring 2006-2017) in densities of nocturnally migrating birds at two radar stations in Indiana. I found that mean density of migratory birds stopping over in Indiana declined by approximately 6.8% annually, but variability in stopover site use increased over the same period. This is consistent with other work completed on continental scales, and highlights the need for further conservation of migratory birds. Second, I studied patterns of stopover site use in Indiana during spring 2016- 2017 and autumn 2015-2016, identifying landscape and local factors associated with those patterns. I used both traditional land cover characteristics and a novel approach using human socioeconomic measures to describe these patterns, and found that socioeconomics, particularly the size of a housing unit, were among the most important predictors of migratory bird density in Indiana. The results from this study suggest that migratory birds are utilizing urban habitats, which are known to contain several novel hazards for birds, but that migratory birds will benefit greatly from interdisciplinary work focusing on urban habitats. Third, I explored a novel method of using weather surveillance radar and eBird citizen science data in combination with each other, to see if both measures provided similar estimates of bird abundances during stopover. Though I found no correlation between the two, I argue that eBird and radar still provide important and complementary insights for the field of migration ecology. Finally, I provide guidelines for private landowners in Indiana on management for declining populations of migratory birds. </p> </div> </div> </div>

<p>Effects of prairie restoration on arthropod diversity was investigated at Gabis Arboretum, Valparaiso, Indiana. A total of 35,408 arthropods belonging to 13 taxa in the restored prairie (RP1 and RP2), old field (OF), and monoculture stand of Phalaris arundinacea (reed canary grass – RCG) sites, were captured, counted, and compared. The enhanced plant species diversity in the restored prairies did not appear to promote the diversity of arthropod taxa. However, the restoration led to a more balanced composition of arthropod functional groups and thus elevated the diversity of functional groups. The arthropod assemblages in the three sites diverged clearly according to my canonical correspondence analysis (CCA) ordination. Pollinator abundance was greatest at RP and least at RCG site, positively correlating with greater forb diversity, and suggesting greater potential for nectar feeding and pollination potential at RP sites. Herbivore abundance was greatest at the RP sites, positively correlating with increasing plant species diversity. Predator abundance was significantly greater at the RCG site compared to the OF and RP sites; it was positively correlated with greater C3 grass cover, a characteristic of the structurally homogenous RCG site, and negatively correlated with increasing plant diversity and forb cover, a characteristic of the diverse and more structurally complex RP sites. Given the apparent non-random distribution of arthropods among the field types, my results suggest plant species composition has a significant effect on arthropod assembly. The monoculture grass stand was found to have a predator dominated arthropod community supported by a small, diverse herbivore community. It is concluded that the prairie restoration has resulted in alteration of arthropod communities supporting greater pollinator and herbivore abundance and a more balanced ratio of herbivores to predators due, in part, to increased plant structural diversity.</p>

Dolphins are increasingly coming into contact with humans, particularly where tourism is involved. It has been assumed that such contact causes chronic stress on dolphin populations. This study examined relatively naive populations of Hector's dolphins and their interaction with various watercrafts. Dolphins in New Zealand have been observed using theodolites and boat-based observations over the last two decades, particularly on the east side of the South Island at Akaroa, which is situated on the coast line of Banks Peninsula. This research was undertaken using shore-based theodolite tracking to observe boat activity around the coast of Lyttelton and Timaru and their associated Harbours. Observations were made mostly over two periods each of six months duration and included the months October through to March during the years 2000-2001 and 2001-2002. Observations made during a third period in 2005 were also incorporated for some of the analyses. Field investigations using a theodolite included more than 376 hours/site/season and recorded dolphin behaviour both with and without the presence of tour boats. Of primary interest were the tours, which ran regular trips to observe Cephalorhynchus hectori in their natural habitat. Hector's dolphins at both Lyttelton and Timaru were consistently observed with particular boat types and not with other types of water craft. Dolphins at Timaru exhibited a greater range of behaviours than those at Lyttelton. Stress-related behaviours such as an increase in swimming speed to open ocean and grouping behaviour were only observed in the presence of boats. Other potential stress behaviours, such as head slaps and repeated tail slaps, were only performed in the absence of boats. Observations implied that some generic dolphin behaviours, which often indicate stressed individuals may not apply to Hector's dolphins, and therefore question the assumption that all dolphin species behave in similar ways. We suggest that low-level tourist boat activity is not placing undue stress on the population. In addition to theodolite observations, tour boat based observations of Hector's dolphin were undertaken and behaviour at each site recorded for a focal animal. Tour boat-based observations concentrated on determining any preference to bow, stern, portside and starboard sides of the vessel. Dolphins consistently showed a preference in direction of approach and departure from tour vessels with a strong tendancy to the bow of the boat, and least with the stern. These results were similar irrespective of site or vessel. Behaviour data were also collected from tour boat vessels over 48 trips/season/site and the data divided into transitional behaviour groups, which included stress behaviours, association / interaction behaviour and neutral behaviour. Behavioural count and time data were collected to reflect the number of times and duration of behaviour occurrence, particularly in relation to transitional behaviours. Determining the presence of stress in Hector's dolphins varied between the data sets and indicated that time is a necessary factor when attempting to determine whether an individual or a general population is genuinely stressed. Quadrant preference and swimming direction in relation to the Black Cat were observed over six years, and both count and time data were collected with regard to behaviour. The results were consistent with preference in quadrant being expressed towards the bow of the boat and least with the stern. The count data suggested no significant impact on Hector's dolphin behaviour in the presence of the Black Cat over time, where time data indicated there was a transition over the years from neutral behaviour in the second year of tour boat activity, to positive behaviour in the third year of boat-activity and finally avoidance behaviour in the seventh year of tour boat activity at Lyttelton Harbour in response to the presence of the Black Cat.

<p>Greater prairie-chickens (<i>Tympanuchus cupido pinnatus</i>; GPC) have declined throughout large areas in the eastern portion of their range. I used species distribution modeling to predict most appropriate areas of translocation of GPC in and around Kankakee Sands, a tallgrass prairie in northwest Indiana, USA. I used MaxEnt for modelling the predictions based on relevant environmental predictors along with occurrence points of 54 known lek sites. I created four models inspired by Hovick et al. (2015): Universal, Environmental, Anthropogenic-Landcover, and Anthropogenic-MODIS. The Universal, Environmental, and Anthropogenic-MODIS models possessed passable AUC scores with low omission error rates. However, only the Universal model performed better than the null model according to binomial testing. I created maps of all models with passing AUC scores along with an overlay map displaying the highest predictions across all passing models. MaxEnt predicted high relative likelihoods of occurrence for the entirety of Kankakee Sands and many areas in the nearby landscape, including the surrounding agricultural matrix. With implementation of some management suggestions and potential cooperation with local farmers, GPC translocation to the area appears plausible.</p> <p>Franklin’s ground squirrels (<i>Poliocitellus franklinii</i>; FGS) have declined throughout a large portion of the eastern periphery of their range. Because of this, The Nature Conservancy is interested in establishing a new population of these animals via translocation. The area of interest is tallgrass prairie in northwest Indiana, USA: Kankakee Sands and the surrounding landscape. Species distribution modelling can help identify areas that are suitable for translocation. I used MaxEnt, relevant environmental variables, and 44 known occurrence points to model the potential for translocation of FGS to Kankakee Sands and the surrounding area. I created four models inspired by Hovick et al. (2015): Universal, Environmental, Anthropogenic-Landcover, and Anthropogenic-MODIS. I created maps of models with passing AUC scores. The final map was an overlay map displaying the highest relative likelihood of occurrence predictions for the area in all passing models. Only the Universal and Anthropogenic-MODIS models had passable AUC scores. Both had acceptable omission error rates. However, none of the models performed better than the null model (p < 0.05). MaxEnt predicted that a few areas in and outside of Kankakee Sands possess high relative likelihoods of occurrence of FGS in both the Universal and Anthropogenic-MODIS models. However, MaxEnt predicted high relative likelihoods in the surrounding agricultural matrix in the Universal Model. FGS prefer to cross through agricultural areas via unmowed roadside instead of open fields (Duggan et al. 2011). Because of this, high predictions in agricultural matrices in the Universal model are irrelevant. High relative likelihood predictions for linear sections that are obviously roads are disregardable in the context of my modeling efforts. Because of my low sample size, none of the models are really reliable in predicting relative likelihoods of occurrence for this area. Despite high relative likelihood predictions, the appropriateness of a translocation effort to the area is inconclusive.</p>

<p>Due to overpopulation and resource-poor habitat structure, deer threaten the<a> future of oak and other browse-sensitive species in hardwood forests. </a>Appropriate tools must be used to ensure desirable, diverse, and ecologically stable regeneration of future forests and the sustainability of native plant communities. We performed two experiments and a review to examine the effectiveness of available methods for managing browse of hardwood seedlings and to discover how these interact with each other and other silvicultural methods. First, we examined how fencing interacts with controlled-release fertilization, seed source (genetically select and non-select), and site type (afforested and reforested sites) to enhance the regeneration of planted northern red oak (<i>Quercus rubra </i>L.), white oak (<i>Quercus alba</i>), black cherry (<i>Prunus serotina</i>), and black walnut (<i>Juglans nigra</i>) at five sites in Indiana. Fencing proved to be the greatest determinant of seedling growth, survival, and quality. Fertilizer enhanced the early growth of white oak and black cherry, though for black cherry this occurred only inside fences. Select seed sources grew better and showed greater quality; however, the survival of select seedlings was limited by deer browse in absence of fences. Trees at afforested sites had lower survival if left non-fenced. Secondly, we also investigated how fencing and invasive shrub removal affected natural regeneration, species richness, and ground-layer plant cover under closed-canopy forests. Honeysuckle (<i>Lonicera maackii</i>) removal had a variable effect depending on species and site. Positive effects were most common for shade-intolerant species, while negative effects occurred for a few shade-tolerant species at some sites. Deer fencing had a positive effect on cherry and hackberry seedling density, and a negative effect on elm seedling density. Honeysuckle and deer fencing interacted antagonistically in some instances. Fencing without honeysuckle removal resulted in lower elm abundance and herbaceous-layer cover. In the densest invasions, leaving honeysuckle intact resulted in a complete lack of recruitment into the sapling layer. Our experiment suggests that invasive shrub removal and fencing be done together. Finally, we synthesized the existing literature on browse management options for hardwood regeneration to evaluate their relative effectiveness. Fences, tree shelters, repellents, facilitation by neighboring plants, deer population control, timber harvest, and slash all had positive effects on height growth of regenerating seedlings under deer browse pressure. Fences were more effective at reducing browse than repellents, while fertilizers increased browse and had no effects on growth. </p>

<div>Biodiversity loss is the silent crisis of the 21st century. Human activities are drastically altering the diversity of life on Earth, yet the extent of this transformation is shrouded by our limited information on biodiversity and how it is changing. Emerging technologies may be suited to fill this information gap, and as a result increase our capacity to measure and manage natural systems. Acoustic monitoring is a remote sensing technique that is rapidly reshaping the temporal and spatial scales with which we can assess animal biodiversity. Through recording and analyzing soundscapes—the collection of sounds occurring at a given place and time—we can assess biodiversity, habitat condition, and environmental change. However, the relationships between soundscapes and these three ecological dimensions are still in the early phases of categorization, especially in aquatic systems. </div><div><br></div><div>This dissertation investigates how soundscapes can be used to measure biodiversity, habitat condition, and environmental change in aquatic habitats. It addresses several knowledge gaps: First, I develop a framework for classifying unknown sounds within a soundscape, which I use to measure the acoustic diversity and dynamics within a tropical freshwater wetland. Second, I demonstrate that soundscapes can reflect the resilience of animal communities following disturbance events. Altered soundscapes revealed that Hurricane Maria, which swept through Puerto Rico in September 2017, impacted dry forest animal communities more than adjacent coral reef communities. Third, in kelp forest habitats off the coast of California, USA, I showed that soundscape variables correlated with ecological variables associated with regime shift in kelp forests, including urchin density, kelp cover, and fish diversity. Overall, this dissertation demonstrates that soundscape recording and analysis is a promising way to assess the ecological conditions of aquatic systems. </div>

<p>Human interactions with white-tailed deer (<em>Odocoileus virginianus</em>) continue to change across the U.S. The growth of deer populations and urbanization of human populations have shifted values for wildlife away from traditional use toward mutual coexistence while simultaneously providing habitat for deer to thrive.<strong> </strong>Still, a mismatch exists between the reality of human-deer interactions and the management of them. Despite a changing social landscape, the human dimensions of deer management remain focused on hunting interests and the mitigation of crop damage to agricultural producers. Amid a national push to broaden wildlife ‘stakeholders’ to encompass all potential beneficiaries of wildlife, state wildlife agencies need to assess the needs and concerns of the broader public they serve to determine whether and how to engage non-traditional groups in wildlife management planning.</p> <p>Recognizing these needs, the Indiana Department of Natural Resources (IN-DNR) partnered with Purdue University in 2018 to initiate the Integrated Deer Management Project (IDMP). As part of the IDMP, this dissertation comprises the first empirical assessment of social perceptions of white-tailed deer across Indiana. My research aimed to: (i) examine the initial context of human-deer interactions in Indiana and identify key social and cognitive factors that shape them; (ii) investigate how emotions, an understudied construct, interact with beliefs and attitudes to influence resident judgements about deer management; (iii) understand existing levels of satisfaction with deer management, potentials for social conflict over management approaches, and their social-ecological drivers; and (iv) develop indices and tools that can help IN-DNR officials better account for social perceptions and concerns in deer management planning. Due to a lack of prior knowledge about human-deer interactions in the state, I used an exploratory mixed-methods research design to address these objectives. I began by conducting 59 semi-structured interviews with residents around Indiana and two focus groups in the city of Bloomington (n=14) to understand their existing perceptions, beliefs, attitudes, and emotions related to deer and deer management. These interviews informed the development of a quantitative survey which I distributed to 6,000 residents across the state. I received 1806 completed surveys for a response rate of 33%.</p> <p>My data show that social perceptions of deer and deer management remain complex, driven by dynamic feedbacks among emotions, personal experiences, livelihood and behavioral contexts, beliefs about deer management, and beliefs about other social groups. I found that mixed emotions, situational contexts, and perceived power imbalances play key roles in shaping and shifting deer-related cognitions, yet models of cognitive processing, and human-wildlife interactions more broadly, neglect these dynamics. Emotions, specifically, have been marginalized by researchers and practitioners, likely due to the perception that they represent irrational reactions rather than calculated judgements. Under different scenarios of encountering deer, however, I found that respondent emotions exert a mediating effect on their judgments about deer management, and that the type of deer encountered matters. Emotions thus work together with cognitions to process various stimuli in a human-wildlife encounter and reach a normative decision. I posit that understanding when and why emotional responses arise will help practitioners develop more effective and socially accepted approaches to wildlife management.</p> <p>I next developed and analyzed indices of public satisfaction with the IN-DNR and potentials for social conflict over deer management approaches. I found that public satisfaction with deer management is nuanced and multidimensional. Cognitive variables like residents’ perceived acceptability of management methods and their deer-related concerns most strongly predicted agency performance and quality measures of satisfaction, whereas demographic characteristics including self-identity, wildlife value orientation, and allowance of hunting on one’s property exerted the strongest influences on trust components of satisfaction. Future studies should advance a multidimensional conception of satisfaction and associate it with key variables that I suspect underly satisfaction but were not captured in this study: perceived control, psychological distance, and norms of knowledge exchange between wildlife agencies and the public. Next, I found that potentials for social conflict over deer management varied with resident self-identities and management methods but showed more predictable variation with political ideologies. Geographically, hotspots of social conflict clustered around urban areas, indicating that cities and their residents should serve as a focus for public engagement efforts and mixed management strategies. Expanding agency conceptions of public satisfaction and social conflict represents a critical step towards broadening support for wildlife management and practicing good wildlife governance.<strong> </strong>I conclude by discussing barriers to integrating social and ecological data and the practicality of incorporating complex social dimensions into wildlife management planning.</p>

<p>Mayflies are important macroinvertebrate members of steam communities and are highly sensitive to agricultural insecticides. In this dissertation I sought to explore whether Heptageniidae<i> </i>mayflies in Indiana have evolved greater tolerance to clothianidin, a neonicotinoid insecticide that has been widely applied over the predominant corn and soybean crops of the state for the last 20 years. Over the five chapters of this dissertation, I investigate different aspects of the effects of clothianidin on mayfly populations. First, I collected mayfly populations from streams around the state across a gradient of agricultural landscape to see if proximity to corn and soybean crops was associated with tolerance to the insecticide. I found significant variation in tolerance between the populations but only connected it to land use for one species and one insecticide. Second, I investigated the potential for increases in predation rates due to exposure to low concentrations of clothianidin by both a vertebrate and invertebrate predator. Sublethal exposure did increase the risk of predation by the invertebrate predator but not the vertebrate. Third, I collected four populations of mayflies and placed them in a common stream which is heavily impacted by agricultural runoff. The most tolerant of the four populations had the highest survival rates and was native to the polluted stream, suggesting that it was best adapted to the local conditions. Finally, the last chapter is a discussion of the factors influencing the evolution of contaminant tolerance, the implications for biomonitoring, and a series of recommendations for incorporating evolved tolerance into biomonitoring practices. Collectively, this work suggests that the lethal and sublethal effects of clothianidin exposure create conditions suitable for the evolution of tolerance in Heptageniid mayflies. While there are already differences in tolerance between populations, it seems likely that mayfly pesticide tolerance will continue to increase as pesticides continue to impact aquatic ecosystems. </p>

<p>  </p> <p>The rise of technology as a data source for ecological research and biodiversity conservation has led to a host of new opportunities, and new challenges, for researchers, conservationists, policymakers, and land managers. As these technologies have become more common and more capable, researchers need improved methods and improved theoretical frameworks to integrate these technologies with each other; with social science and policy; and with land-use planning. This thesis proposes several of these conceptual and theoretical frameworks—one for integration of heterogeneous data and another for the integration of ecological data with economic decision-making and policy analysis. It then suggests new methodologies for data quality assurance. Lastly, it demonstrates the applicability of acoustic monitoring in a key land-use context: agriculture in a premium crop that is grown in global biodiversity hotspots. </p>