Within the lymphocyte lineage, GATA-3 is a major transcription factor implicated in the regulation of Th1/Th2 differentiation by promoting the expression of the Th2 cytokines, such as IL-4, IL-5, IL-10 and IL-13. Although the role of GATA-3 in the development of the Th2 lineage has been extensively described in the literature, the molecular mechanisms underlying its activity remain to be clarified. Here, we investigated whether GATA-3 might be regulated by reversible acetylation. In vivo, GATA-3 associates with class I and III HDACs. Biochemical studies unraveled the specific association of GATA-3 with the class III member SIRT1. Association with SIRT1 leads to the inhibition of GATA-3-induced IL-5 transcription. Using siRNA, we further show that SIRT1 promotes destabilization of GATA-3. Interestingly, nicotinamide, a specific inhibitor of SIRTs had no effect on the ability of SIRT1 to destabilize GATA-3 and to repress its transcriptional activity. In addition, a catalytic-defective mutant of SIRT1 (H363Y) shows similar effects to wild-type SIRT1, demonstrating that the deacetylase activity of SIRT1 is not required for its regulation of GATA-3. For the first time, our study indicates that SIRT1 is functionally linked to GATA-3. Moreover, our results also suggest that some important SIRT1 functions may not require its deacetylase activity.

No description available.

As principais propriedades físico-químicas da quitosana dependem da massa molar média, grau médio de acetilação (<span style=\"text-decoration: overline\">GA) e do parâmetro de acetilação (PA) que expressa o padrão de distribuição das unidades 2-acetamido-2-desoxi-D-glucopiranose (GlcNAc) e 2-amino-2-desoxi-D-glucopiranose ( GlcN) ao longo de suas cadeias. A distribuição alternada, randômica ou em blocos das unidades GlcN e GlcNAc ao longo das cadeias poliméricas está diretamente relacionada com as condições de preparação da quitosana, sendo que as reações executadas em condições homogêneas geram quitosanas em cujas cadeias há o predomínio da distribuição randômica, enquanto que nas quitosanas produzidas em condições heterogêneas a distribuição em blocos predomina. Neste trabalho &beta;-quitina extraída de gládios de lulas (Loligo sp) foi submetida a 3 etapas consecutivas do processo de desacetilação assistida por irradiação de ultrassom de alta intensidade (processo DAIUS), resultando em quitosana extensivamente desacetilada (<span style=\"text-decoration: overline\">GA &asymp; 2%) e de elevada massa molar média viscosimétrica (<span style=\"text-decoration: overline\">Mv &asymp; 354000 g/mol) comparada a quitosanas obtidas por outros métodos. Essa amostra, denominada amostra QSo, foi dissolvida em ácido acético aquoso e então submetida à reação de N-acetilação por 24 h à temperatura ambiente. A ocorrência de O-acetilação foi evitada pela adição de 1,2-propanodiol ao meio reacional e a variação da razão molar anidrido acético/grupos amino permitiu a obtenção de cinco amostras de quitosanas N-acetiladas, as quais foram caracterizadas por espectroscopia de RMN 1H, espectroscopia na região do infravermelho, difração de raios X, viscosimetria capilar, microscopia eletrônica de varredura e análise termogravimétrica. O parâmetro de acetilação (PA) das quitosanas N-acetiladas foi determinado a partir dos espectros de RMN 1H de modo a permitir a avaliação do tipo de distribuição de unidades 2-acetamido-2-desoxi-D-glucopiranose (GlcNAc) e 2-amino-2-desoxi-D-glucopiranose (GlcN) predominante nos produtos. As reações de N-acetilação foram executadas em duplicata gerando as amostras dos conjuntos 1 e 2, as quais apresentaram <span style=\"text-decoration: overline\">GA variando no intervalo 25%&lt; <span style=\"text-decoration: overline\">GA &lt;55%, sendo constatada variação linear de <span style=\"text-decoration: overline\">GA com a razão molar anidrido acético/grupos amino. As quitosanas N-acetiladas apresentaram parâmetro de acetilação variando com 0,9&lt;PA&lt;1,5, indicando o predomínio da distribuição randômica das unidades GlcNAc e GlcN. As quitosanas N-acetiladas apresentaram maior estabilidade térmica em comparação com a quitosana de partida (amostra QSo), devido a porcentagem de unidades GlcNAc nas cadeias dos polímeros que provocaram alterações na sua estrutura cristalina. Os ângulos de Bragg característicos de &beta;-quitina (amostra QTo) extraída de gládios de lulas foram identificados nos difratogramas das quitosanas N-acetiladas com 30%&lt; <span style=\"text-decoration: overline\">GA &lt;55%, o que sugere que essas amostras adquiriram características semelhantes a da &beta;-quitina. Outra evidência desse fato foi comprovada através da análise das micrografias das amostras de quitosana N-acetiladas, que revelaram que as características das superfícies das partículas das amostras mais acetiladas são semelhantes a da &beta;-quitina. / The main physichochemical properties of chitosan rely on its average molar mass, average degree of acetylation (<span style=\"text-decoration: overline\">GA) and the parameter of acetylation (PA), which expresses the distribution pattern of 2-deoxy-2-acetamido-D-glucopyranose (GlcNAc) and 2-deoxy-2-amino-D-glucopyranose (GlcN) units along its chains. The occurrence of alternated, random or block-like distribution of GlcN and GlcNAc along the polymer chains is directly related to preparation conditions of chitosan. When homogeneous conditions are applied chitosan chains exhibiting random distribution are produced, while the chitosan generated from heterogeneous reactions presents block-like distribution. In this work, &beta;-chitin extracted from squid pens (Loligo sp.) was submitted to three consecutive steps of ultrasound-assisted deacetylation process (USAD process), resulting in an extensively deactylated chitosan (DA=2%) with high viscosity average molar mass (<span style=\"text-decoration: overline\">Mv= 354,000 g/mol) compared to chitosan obtained by other methods. This chitosan, named sample CSo, was dissolved in aqueous acetic acid and then it was submitted to N-acetylation reaction for 24 hours at room temperature. The occurrence of O-acetylation was prevented by adding 1,2-propanediol to the reaction nedium and the variation of the molar ratio acetic anhydride/amino groups allowed the preparation of five N-acetylated chitosans, named as samples RCSon, which were characterized by 1H NMR spectroscopy, infrared spectroscopy, X-ray diffraction, viscometry, scanning electron microscopy and thermogravimetric analysis. The parameter of acetylation (PA) of N-acetylated chitosans was determined from the 1H NMR spectra, allowing the assessment to the distribution pattern of GlcNAc and GlcN units. The N-acetylation reactions were carried out in duplicate, generating two independent sets of N-acetylated chitosans whose average degree of acetylation ranged as 25% &lt; DA &lt; 55%, a linear increase of DA with increasing molar ratio acetic anhydride/amino groups being observed. The N-acetylated chitosans presented parameter of acetylation ranging as 0,9 &lt; PA &lt; 1,5, indicating the predominance of random distribution of GlcNAc and GlcN units. The N-acetylated chitosans showed higher thermal stability as compared to the parent chitosan (CSo sample), probably due to the changes in the degree of order resulting from the higher content of GlcNAc units present in former samples. The Bragg angles characteristic of beta-chitin (CTo sample) were identified in the XRD patterns of N-acetylated chitosans, suggesting that these samples acquired similar characteristics as beta-chitin. Further evidence of this fact was observed through the SEM analyses, which revealed that the characteristics of particle\'s surfaces of N-acetylated chitosans are similar to those of beta-chitin.

Abstract: Molecular and cellular insights into IKAP and Elongator functions As the first step in the complex process of gene expression, the transcription of genes from DNA to RNA by RNA polymerase II is subject to a multiplicity of controls and is thereby the endpoint of multiple cell regulatory pathways. We focused here on the molecular and cellular functions of IKAP and by extension of Elongator complex, initially found associated with the hyperphosphorylated RNA polymerase II during the elongation stage of transcription. IKAP is required for the assembly of Elongator subunits into a functional complex. Elongator has a histone acetyltransferase (HAT) activity associated with one of its subunits, named hELP3. In agreement with a potential role in transcript elongation, Elongator is associated with nascent RNA emanating from the elongating RNA polymerase II along the transcribed region of several yeast genes and chromatin immunoprecipitation experiments have also demonstrated an association of Elongator with genes in human cells. Different mutations in the human IKBKAP gene, encoding IKAP/hELP1, cause familial dysautonomia, a severe neurodevelopmental disease with complex clinical characteristics. Affected individuals are born with the disease and abnormally low numbers of neurons in peripheral nervous ganglions. To gain insight into the role played by IKAP and the Elongator complex in the transcription of genes and concomitantly learn about the molecular defects underlying the FD, an RNA interference approach was used to deplete the IKAP protein in human cells. In yeast, disruption of ELP1 (yeast homolog of human IKAP) is known to destabilize the ELP3 catalytic subunit, which leads to loss of Elongator integrity. Our experiments performed in human cells revealed that the levels of hELP3 protein is also affected by IKAP depletion after RNAi. We took advantage of this cellular loss-of-function model to identify genes whose transcription requires IKAP, by microarray experiments. Among the identified candidates, several were previously described to be involved in cell motility, or actin cytoskeleton remodelling. Because cell motility is of crucial importance for the developing nervous system, and therefore of obvious relevance to FD, the potential role of IKAP in cell motility was characterized at the cellular level. Several cell motility/migration assays demonstrated that the IKAP depletion has functional consequences so that IKAP-depleted cells showed defects in migration. Particularly, the reduced cell motility of neuronal-derived cell lines may be highly relevant to the neurodevelopmental disorder that affects FD patients. Whether or not the defects in cell migration resulted of impaired transcriptional elongation of the IKAP-dependent genes was investigated by chromatin immuno-precipitation technique. These experiments indicated that IKAP depletion leads to a decreased histone H3 acetylation in the transcribed region of its target genes in the context of Elongator complex. These acetylation defects are correlated with a decrease of the RNA polymerase II recruitment through the transcribed region of target genes, whereas the recruitment on the promoter is mostly unaffected. These results indicate that Elongator affects transcript elongation in vivo, but not the recruitment of the RNA polymerase II to the promoter. These very specific effects of IKAP/hELP1 depletion on histone acetylation and RNA polymerase II density across target genes are consistent with a direct effect of Elongator on transcriptional elongation in vivo and point to a function for Elongator in histone acetylation during transcript elongation. Résumé: Caractérisation des rôles biologiques de la protéine IKAP et du complexe Elongator La transcription des gènes de lADN en ARN est fondamentale pour lexpression des protéines et la capacité de nos cellules à sadapter à leur environnement. Ce processus finement régulé est catalysé par un enzyme, lARN polymérase II, vers lequel convergent une multitude de voies de signalisation. Dans le cadre de ce travail, nous nous sommes intéressés aux fonctions moléculaires et cellulaires de la protéine IKAP et du complexe Elongator. IKAP est la protéine qui assemble les sous unités dElongator en un complexe fonctionnel. Le complexe Elongator est associé à lARN polymérase II hyper-phosphorylée pendant létape délongation de la transcription et possède une activité histone acétyltransferase associée à une de ses sous unités, appelée ELP3. Chez la levure, Elongator est recruté an niveau des ARNs naissants, qui émanent directement de lARN polymérase II au niveau de la région transcrite des gènes étudiés. De plus, des expériences dimmunoprécipitation de la chromatine ont mis en évidence la présence du complexe Elongator au niveau de plusieurs gènes humains. Différentes mutations au niveau du gène IKBKAP, codant pour la protéine IKAP, sont responsables de la dysautonomie familiale, une maladie génétique qui affecte le développement du système nerveux périphérique. En effet, les individus affectés présentent une diminution de la densité de neurones au niveau des ganglions nerveux périphériques. Lobjectif de nos travaux est de comprendre davantage le rôle de la protéine IKAP et du complexe Elongator dans la transcription des gènes et ainsi, dinvestiguer les mécanismes moléculaires responsables dans la physiopathologie de la dysautonomie familiale. Un modèle de perte de fonction pour la protéine IKAP a dabord été généré par interférence dARN. Des travaux réalisés chez la levure indiquent que la protéine ELP1 (homologue de IKAP chez la levure) est essentielle pour la stabilité de la sous unité catalytique du complexe, la protéine ELP3. Les expériences réalisées sur notre modèle humain démontrent que le taux de la protéine ELP3 est également affecté par la déplétion dIKAP causée par linterférence dARN. Ce modèle de perte de fonction a été utilisé afin détablir la liste des gènes dont lexpression est contrôlée par la protéine IKAP, par des expériences de microarrays. Parmi les candidats identifiés, plusieurs ont été décrits comme impliqués dans la migration cellulaire et le remodelage du cytosquelette dactine. Le processus de migration des cellules est fondamental au cours du développement du système nerveux et par conséquent particulièrement relevant dans le contexte de la dysautonomie familiale. Limplication dIKAP dans la migration cellulaire a été investigué par différents tests de fonction qui montrent que la diminution dIKAP dans différentes lignées cellulaires entraîne une réduction significative de leur capacité migratoire. Ces résultats suggèrent que la diminution du nombre de neurones observée dans les ganglions périphériques des patients atteints de la dysautonomie familiale pourrait résulter dune altération de leur capacité à migrer au cours du développement. Enfin, des expériences dimmunoprécipitation de la chromatine ont été menées en utilisant notre modèle afin de déterminer dans quelle mesure le déficit de migration observé en labsence dIKAP serait la conséquence dun défaut de la fonction dElongator au niveau de lélongation de la transcription des gènes. Les résultats nous ont montré que la diminution dexpression dIKAP entraîne une réduction de lacétylation des histones H3 dans la région transcrite de ses gènes cibles. De plus, ce déficit dacétylation est directement corrélé avec un désengagement progressif de lARN polymérase II le long de la région transcrite de ces gènes. Par conséquent, ces résultats démontrent que le complexe Elongator affecte lélongation des transcrits in vivo, mais pas le recrutement de lARN polymérase II au niveau du promoteur. Ces effets très spécifiques de labsence dIKAP sur lacétylation des histones et lengagement de la polymérase II dans la transcription des gènes cibles montrent quElongator exerce un rôle direct au niveau de lélongation de la transcription de ces gènes. De plus, ces résultats suggèrent que la fonction dElongator serait dacétyler les histones au cours de lélongation transcriptionnelle in vivo.

Mouse polyomavirus (MPyV) capsid is composed of the main capsid protein VP1 and minor capsid proteins VP2 and VP3. Minor proteins are not essential capsid assembly, but they are key for efficient viral infection. The first part of this thesis studies the modifications of VP2 and VP3, the deamidation of Asn at 253 of VP2 (137 of VP3) and N-terminal acetylation of Ala of VP3, which could be the cause of double bands for VP2 and VP3 on SDS-PAGE. Mutated genomes of MPyV N253D (Asn to Asp) and N253E (Asn to Glu) simulating deamidation and A117V (Ala to Val) with reduced acetylation were prepared previously. We prepared three isolations of the mutant viruses and we confirmed that the deamidation is the cause of the double bands. Mutant viruses were compared to the wild type in terms of efficiency of infection, but the role of deamidation could not be proven. Virus A117V is noninfectious either due to lowered acetylation or the substitution of amino acid at this position. This thesis also studies the role of -tubulin acetylation in the infection of MPyV. The role of -tubulin acetylation in viral infection is being investigated to find new antiviral strategies. Acetylation rises after MPyV infection, but this is not due to a change in mRNA expression of tubulin acetylating (TAT1) or deacetylating enzyme...

As principais propriedades físico-químicas da quitosana dependem da massa molar média, grau médio de acetilação (<span style=\"text-decoration: overline\">GA) e do parâmetro de acetilação (PA) que expressa o padrão de distribuição das unidades 2-acetamido-2-desoxi-D-glucopiranose (GlcNAc) e 2-amino-2-desoxi-D-glucopiranose ( GlcN) ao longo de suas cadeias. A distribuição alternada, randômica ou em blocos das unidades GlcN e GlcNAc ao longo das cadeias poliméricas está diretamente relacionada com as condições de preparação da quitosana, sendo que as reações executadas em condições homogêneas geram quitosanas em cujas cadeias há o predomínio da distribuição randômica, enquanto que nas quitosanas produzidas em condições heterogêneas a distribuição em blocos predomina. Neste trabalho &beta;-quitina extraída de gládios de lulas (Loligo sp) foi submetida a 3 etapas consecutivas do processo de desacetilação assistida por irradiação de ultrassom de alta intensidade (processo DAIUS), resultando em quitosana extensivamente desacetilada (<span style=\"text-decoration: overline\">GA &asymp; 2%) e de elevada massa molar média viscosimétrica (<span style=\"text-decoration: overline\">Mv &asymp; 354000 g/mol) comparada a quitosanas obtidas por outros métodos. Essa amostra, denominada amostra QSo, foi dissolvida em ácido acético aquoso e então submetida à reação de N-acetilação por 24 h à temperatura ambiente. A ocorrência de O-acetilação foi evitada pela adição de 1,2-propanodiol ao meio reacional e a variação da razão molar anidrido acético/grupos amino permitiu a obtenção de cinco amostras de quitosanas N-acetiladas, as quais foram caracterizadas por espectroscopia de RMN 1H, espectroscopia na região do infravermelho, difração de raios X, viscosimetria capilar, microscopia eletrônica de varredura e análise termogravimétrica. O parâmetro de acetilação (PA) das quitosanas N-acetiladas foi determinado a partir dos espectros de RMN 1H de modo a permitir a avaliação do tipo de distribuição de unidades 2-acetamido-2-desoxi-D-glucopiranose (GlcNAc) e 2-amino-2-desoxi-D-glucopiranose (GlcN) predominante nos produtos. As reações de N-acetilação foram executadas em duplicata gerando as amostras dos conjuntos 1 e 2, as quais apresentaram <span style=\"text-decoration: overline\">GA variando no intervalo 25%&lt; <span style=\"text-decoration: overline\">GA &lt;55%, sendo constatada variação linear de <span style=\"text-decoration: overline\">GA com a razão molar anidrido acético/grupos amino. As quitosanas N-acetiladas apresentaram parâmetro de acetilação variando com 0,9&lt;PA&lt;1,5, indicando o predomínio da distribuição randômica das unidades GlcNAc e GlcN. As quitosanas N-acetiladas apresentaram maior estabilidade térmica em comparação com a quitosana de partida (amostra QSo), devido a porcentagem de unidades GlcNAc nas cadeias dos polímeros que provocaram alterações na sua estrutura cristalina. Os ângulos de Bragg característicos de &beta;-quitina (amostra QTo) extraída de gládios de lulas foram identificados nos difratogramas das quitosanas N-acetiladas com 30%&lt; <span style=\"text-decoration: overline\">GA &lt;55%, o que sugere que essas amostras adquiriram características semelhantes a da &beta;-quitina. Outra evidência desse fato foi comprovada através da análise das micrografias das amostras de quitosana N-acetiladas, que revelaram que as características das superfícies das partículas das amostras mais acetiladas são semelhantes a da &beta;-quitina. / The main physichochemical properties of chitosan rely on its average molar mass, average degree of acetylation (<span style=\"text-decoration: overline\">GA) and the parameter of acetylation (PA), which expresses the distribution pattern of 2-deoxy-2-acetamido-D-glucopyranose (GlcNAc) and 2-deoxy-2-amino-D-glucopyranose (GlcN) units along its chains. The occurrence of alternated, random or block-like distribution of GlcN and GlcNAc along the polymer chains is directly related to preparation conditions of chitosan. When homogeneous conditions are applied chitosan chains exhibiting random distribution are produced, while the chitosan generated from heterogeneous reactions presents block-like distribution. In this work, &beta;-chitin extracted from squid pens (Loligo sp.) was submitted to three consecutive steps of ultrasound-assisted deacetylation process (USAD process), resulting in an extensively deactylated chitosan (DA=2%) with high viscosity average molar mass (<span style=\"text-decoration: overline\">Mv= 354,000 g/mol) compared to chitosan obtained by other methods. This chitosan, named sample CSo, was dissolved in aqueous acetic acid and then it was submitted to N-acetylation reaction for 24 hours at room temperature. The occurrence of O-acetylation was prevented by adding 1,2-propanediol to the reaction nedium and the variation of the molar ratio acetic anhydride/amino groups allowed the preparation of five N-acetylated chitosans, named as samples RCSon, which were characterized by 1H NMR spectroscopy, infrared spectroscopy, X-ray diffraction, viscometry, scanning electron microscopy and thermogravimetric analysis. The parameter of acetylation (PA) of N-acetylated chitosans was determined from the 1H NMR spectra, allowing the assessment to the distribution pattern of GlcNAc and GlcN units. The N-acetylation reactions were carried out in duplicate, generating two independent sets of N-acetylated chitosans whose average degree of acetylation ranged as 25% &lt; DA &lt; 55%, a linear increase of DA with increasing molar ratio acetic anhydride/amino groups being observed. The N-acetylated chitosans presented parameter of acetylation ranging as 0,9 &lt; PA &lt; 1,5, indicating the predominance of random distribution of GlcNAc and GlcN units. The N-acetylated chitosans showed higher thermal stability as compared to the parent chitosan (CSo sample), probably due to the changes in the degree of order resulting from the higher content of GlcNAc units present in former samples. The Bragg angles characteristic of beta-chitin (CTo sample) were identified in the XRD patterns of N-acetylated chitosans, suggesting that these samples acquired similar characteristics as beta-chitin. Further evidence of this fact was observed through the SEM analyses, which revealed that the characteristics of particle\'s surfaces of N-acetylated chitosans are similar to those of beta-chitin.

Background: The genes coding for human (h) chorionic somatomammotropin (CS), hCS-A and hCS-B, and placental growth hormone (GH-V), hGH-V are located at a single locus on chromosome 17q22-24. Local regulatory (5´ P and 3´ enhancer) sequences and a remote locus control region (LCR) containing a placenta-specific hypersensitive site (HS) IV, have been implicated in the efficient expression of the placental hCS/GH-V genes, in part through gene transfer studies in placental and non-placental tumor cell lines. However, low levels of endogenous expression are reported in placental tumor cells compared to normal term placenta. Thus it was hypothesized that the hCS/GH-V chromatin structure in human choriocarcinoma cells is less accessible to regulatory regions essential for efficient expression due to DNA and/or histone modifications, specifically methylation and acetylation, respectively. Approach: To assess individual hCS-A, hCS-B and hGH-V gene expression in placental and non-placental tumor cells, and assess the effect of increasing “chromatin accessibility” on hCS/GH-V RNA levels by inhibiting DNA methylation and histone deacetylation using 5-aza-2´-deoxycytidine (azadC) and trichostatin A (TSA). Principal Findings: Low levels of hCS-A, hCS-B and hGH-V RNA were detected in placental and non-placental tumor cells compared to term placenta. A significant >5-fold increase in promoter activity was seen in placental but not non-placental cells transfected with hybrid hCS promoter luciferase genes containing 3´-enhancer sequences. Placental JEG-3 cells pretreated with azadC and TSA resulted in a significant >10-fold increase in hCS-A, hCS-B and hGH-V RNA levels compared to TSA treatment alone, however, a modest ~3-fold effect was seen in non-placental MCF-7 cells. By contrast to the effect of pretreatment with azadC, post-treatment with azadC mutes the stimulatory effects of TSA on hCS/GH-V transcripts. The specificity of the response suggests that azadC treatment, and presumably hypomethylation of DNA, results in an increase in response to TSA and histone hyperacetylation at the hGH/CS locus. An assessment of histone H3/H4 hyperacetylation in JEG-3 cells treated with azadC and TSA versus TSA alone revealed significant increases consistent with a more open chromatin structure including the hCS 3´-enhancer sequences and LCR. Conclusions: These observations suggest that accessibility of remote and local regulatory regions required for efficient placental hGH/CS expression can be restricted by DNA methylation and histone acetylation status. This includes restricting access of the hCS 3´-enhancer sequences to available placental enhancer transcription factors. / May 2016

Compaction of DNA into chromatin is an important feature of every living cell. This compaction phenomenon is brought about and maintained by a variety of DNA binding proteins, which have evolved to suit the specific needs of the different cell types spanning the three kingdoms of life; the eukaryotes, prokaryotes and archaea. Sulfolobus solfataricus, a member of the crenarchaeal subdivision of the archaea, has two prominent DNA binding proteins known as Alba (1&2) and Sso7d. Alba1 is acetylated in vivo at two positions and this modification lowers its’ affinity for binding DNA. Acetylation levels impact many cellular processes and in higher organisms play a critical role in the development of many cancers and other diseases. This thesis documents the finding and characterisation of the N-terminal acetyltransferase (ssArd1) of SsoAlba1, based on its’ sequence homology to the catalytic subunits Ard1, Nat3 and Mak3 belonging to the larger eukaryal Nat complexes NatA, NatB and NatC, respectively. Mutagenesis studies revealed that ssArd1 preferentially acetylates N-termini bearing a serine or alanine residue at position 1 (after methionine cleavage). It is also capable of acetylating other proteins with very different physical structures. These findings allow classification of ssArd1 as a promiscuous acetyltransferase belonging to the Gcn5-N-acetyltransferase (GNAT) superfamily. The active site of the enzyme was examined through mutagenesis studies, revealing that the mechanism of acetylation is likely to proceed through a direct acetyl transfer involving a tetrahedral intermediate. Structural studies provided some insight into the molecular structure of ssArd1.

<p>Primary cilia are evolutionarily conserved, acetylated microtubule-based organelles that transduce mechanical and chemical signals. Primary cilium assembly is tightly controlled and its deregulation causes a spectrum of human diseases. Formation of primary cilium is a collaborative effort of multiple cellular machineries, including microtubule, actin network and membrane trafficking. How cells coordinate these components to construct the primary cilia remains unclear. In this dissertation research, we utilized a combination of cell biology, biochemistry and light microscopy technologies to tackle the enigma of primary cilia formation, with particular focus on isoform-specific roles of non-muscle myosin II family members. We found that myosin IIB (Myh10) is required for cilium formation. In contrast, myosin IIA (Myh9) suppresses cilium formation. In Myh10 deficient cells, Myh9 inactivation significantly restores cilia formation. Myh10 antagonizes Myh9 and increases actin dynamics, permitting pericentrosomal preciliary complex formation required for cilium assembly. Importantly, Myh10 is upregulated upon serum starvation-induced ciliogenesis and this induction requires Atat1/Mec-17, the microtubule acetyltransferase. Our findings suggest that Atat1/Mec17-mediated microtubule acetylation is coupled to Myh10 induction, whose accumulation overcomes the Myh9-dependent actin cytoskeleton, thereby activating cilium formation. Thus, Atat1/Mec17 and myosin II coordinate microtubules and the actin cytoskeleton to control primary cilium biogenesis.</p> / Dissertation

Alternative splicing is an important cellular mechanism. It allows to produce multiple protein isoforms from a limited number of genes. Regulation of alternative splicing involves cis-acting elements on pre-mRNA and trans-acting splicing factors (SR and hnRNP proteins). Because splicing occurs co-transcriptionaly, chromatin structure appears to have a role in the regulation of alternative splicing. We have studied the effect of histone acetylation on alternative splicing. We have prepared splicing reporter for alternative EDB exon, which is part of the fibronectin gene. We have shown, that the inhibition of histone deacetylases affects splicing pattern of EDB exon from the reporter in the same way as the splicing of the endogenous EDB exon. Furthermore, we have shown, that the structure of the promoter affects splicing of alternative EDB exon from splicing reporter. Currently we have found out, that the structure of the promoter influences the degree of histone H4 acetylation. Inclusion of alternative EDB exon in mRNA was inversely proportional to histon acetylation on the reporter. This work might explain why various promoters have different splicing patterns of alternative exons.