Orientador: Ricardo Jannini Sawaya / Dissertação (mestrado) - Universidade Estadual de Campinas, Instituto de Biologia / Made available in DSpace on 2018-08-25T23:18:41Z (GMT). No. of bitstreams: 1 Pires_ThiagoAugusto_M.pdf: 2411650 bytes, checksum: 8eb94586d77742cae5062b5aec5233a8 (MD5) Previous issue date: 2014 / Resumo: Em termos gerais, comunidades biológicas podem ser estruturadas por elementos que ocorrem em escalas espaciais diversas, que incluem fatores bióticos (e.g., competição e predação); fatores abióticos (e.g., heterogeneidade ambiental), históricos (e.g., eventos de extinção e colonização; e dinâmicas neutras (e.g., dispersões e extinções locais e aleatórias). Uma das formas mais interessantes de se estudar a estrutura de comunidades é a partir da investigação de como diferentes processos e mecanismos influenciam diferentes escalas ou componentes da biodiversidade. Por exemplo, o componente da diversidadebeta, uma medida de dissimilaridade entre comunidades, primariamente avaliada através da presença e ausência das espécies em cada comunidade. Outra forma utilizada por ecólogos para compreender a estrutura de comunidades é avaliar a estrutura filogenética das comunidades. Através da avaliação dessas propriedades e quais possíveis fatores a influenciam, se torna possível compreender as regras de montagem e manutenção de comunidades. Nesse contexto, nossos objetivos gerais nessa dissertação foram: estimar a diversidade beta de anuros das planícies costeiras paulistas em seus diferentes componentes: funcional, taxonômico e filogenético; examinar quais preditores espaciais e ambientais melhor explicam a variação nos três componentes da diversidade avaliadas; avaliar a estrutura filogenética e funcional das comunidades de anuros; testar a conservação filogenética de atributos nos girinos para melhor compreensão da estrutura filogenética e funcional; e analisar quais preditores ambientais explicam melhor a variação na estrutura filogenética e funcional dos anuros. Encontramos que os preditores que mais explicam a variação nas diferentes faces da diversidade beta estudadas aqui (i.e. taxonômica, funcional e filogenética) são as variáveis espaciais. Esse resultado demostra a existência de uma clara x estrutura espacial nas diferentes faces diversidade beta de anuros nas planícies costeiras da mata atlântica no estado de São Paulo. Embora bem menos importante, as variáveis ambientais selecionadas (e.g. condutividade da água, pH e estrutura vegetal) também explicam uma fração importante da variação dos diferentes componentes da diversidade beta de anuros. As variações da diversidade beta taxonômica, funcional e filogenética dos girinos apresentam uma estrutura semelhante espacial assim como ambiental. Esse resultado pode estar revelando que processos, espaciais ou ecológicos, semelhantes, podem estar estruturando a diversidade beta de anuros nas planícies costeiras. Outro resultado interessante é que encontramos foi que das 33 comunidades avaliadas, 17 apresentam uma clara estrutura filogenética (agrupamento filogenético) e 12 apresentaram uma estrutura funcional agregada. A diversidade de atributos dos girinos é significantemente concentrada em poucos nós e próximos da raiz da filogenia, demostrando que girinos apresentam conservação filogenética de atributos na região estudada. Uma significante parte da variação na estrutura filogenética das comunidades é explicada por seis variáveis ambientais selecionadas, tais como a presença de potenciais predadores, diversidade de vegetação externa, cobertura de dossel, variáveis importantes, dentre as cinco selecionadas, para a estrutura funcional. Todas essas variáveis são importantes para o desenvolvimento, sobrevivência e consequentemente a ocorrência de anuros. Assim, estes resultados demonstram o importante papel dos processos ecológicos (filtros ambientais) e evolutivos (conservação filogenética de atributos) na estrutura funcional, refletida até mesmo na estrutura filogenética de anuros em planícies costeiras / Abstract: Generally, biological communities can be structured by elements that occurring in different spatial scales, which include biotic factors (e.g., competition and predation); abiotic factors (e.g., environmental heterogeneity); historical (e.g., colonization and extinction events); and neutral dynamics (e.g., local and random dispersal and extinctions). One of the most interesting approaches to study the structure of communities is based on the investigation of how different processes and mechanisms influence different scales or components of biodiversity. Such as the beta diversity component, a measure of dissimilarity between communities primarily assessed through the presence and absence of species in each community. Another method used by ecologists to understand the structure of communities is the evaluation of the phylogenetic and functional structure of the community. Through the assessment of these properties and the possible factors that may influencing it, is possible to comprehend the rules for assembly and maintenance of communities. In this context, our general objectives in this dissertation were: estimate the tadpoles¿ beta diversity from coastal plains of São Paulo states, in its different components: functional, taxonomic and phylogenetic; examine spatial and environmental predictors that best explain the variation in the three evaluated components of the beta diversity; assess the phylogenetic and functional structure of tadpoles¿ communities; test the traits phylogenetic conservation of tadpoles to better understand the phylogenetic and functional structure; and investigate the environmental predictors that better explain the variance in phylogenetic and functional structure of tadpoles¿ communities. We found that the spatial predictors explain more variation in the different faces of beta diversity studied here. This result demonstrates the existence of a clear spatial structure in different components of tadpoles¿ beta diversity in the coastal plains of the Atlantic Forest in the state of São Paulo. Although much less important, the selected environmental variables (e.g., water conductivity, pH and vegetation structure) also explain an important fraction of the variation in the different components of beta diversity. The variance of taxonomic, functional and phylogenetic tadpoles¿ beta diversity showed a similar spatial structure as well as environmental structure. This result could be revealing that processes similar (spatial or ecological) may be structuring beta diversity of anuran in the coastal plains. Another interesting result is that out of 33 communities assessed, 18 showed phylogenetic structure (phylogenetic clustering) and 12 displayed an aggregated functional structure. Furthermore, the diversity of tadpoles¿ traits is significantly concentrated in a few nodes and close to the root of the phylogeny, showing that tadpoles present traits phylogenetic conservation in the study area. A significant part of the variation in the phylogenetic structure of communities is explained by six environmental variables selected, such as presence of potential predators, external vegetation structure diversity and canopy cover, variables also significant to the functional structure, among the five selected. All variables are significant for development and survival of tadpoles. Thus, these results demonstrate the important role of ecological (environmental filters) and evolutionary processes (phylogenetic conservatism of traits) in functional structure, reflected even in phylogenetic structure of anurans in coastal plains / Mestrado / Ecologia / Mestre em Ecologia

Orientadores: Fernando Roberto Martins, Roque Cielo Filho / Dissertação (mestrado) - Universidade Estadual de Campinas, Instituto de Biologia / Made available in DSpace on 2018-08-22T19:33:19Z (GMT). No. of bitstreams: 1 Azevedo_MarioJoseMarques_M.pdf: 1374222 bytes, checksum: 6cfc592a0f568c5e7abef9efd6a9adeb (MD5) Previous issue date: 2013 / Resumo: O padrão de utilização de recursos e a teoria de nichos ecológicos constituem elementos importantes na compreensão de como comunidades ecológicas são estruturadas. A maneira como os recursos são partilhados entre as espécies é refletida na sua distribuição de abundância. Abundância e diversidade de espécie são resultantes de processos que determinam as comunidades. Um padrão frequentemente observado é a relação unimodal entre diversidade e produtividade. Processos competitivos são inferidos na determinação da diversidade ao longo do gradiente de produtividade. Devido à abundância das espécies serem resultantes de interações biológicas, os modelos de distribuição de abundância de espécies (DAE) permitem inferir na maneira como o espaço de nicho é partilhado. Utilizamos os modelos de DAE proposto por Tokeshi e índices de concentração de dominância e equabilidade para testar por meio de regressões como a riqueza, biomassa e equabilidade variam ao longo de um gradiente de estresse nutricional definido pela concentração de alumínio no solo. Verificamos um padrão linear negativo entre a riqueza e gradiente de estresse nutricional com fragmentos de floresta estacional semidecídua no extremo de menor estresse e cerradão no extremo oposto do gradiente. A biomassa apresentou um padrão em forma de "U" quando relacionado ao mesmo gradiente. Os índices e os modelos foram condizentes na verificação da concentração de dominância por poucas espécies nos extremos do gradiente, porém somente o índice Evar verificou a maior equabilidade nos valores intermediários do gradiente. Nossos resultados permitiram inferir que tal gradiente foi importante na determinação da riqueza e biomassa das comunidades. Os modelos e índices permitiram verificar o padrão de partilha de nicho, porém não foi possível afirmar o processo que resultou tal partilha / Abstract: The resource utilization patterns and ecological niche theory are important in understand how communities are assembled. The way how resources are apportioned between species are showed in its abundance distribution. Abundance and diversity are outcome of process that structure communities. The pattern frequently found is a "hump-back" relationship between diversity and productivity. Competitive processes are inferred in determination of diversity along productivity gradient. Due to species abundance are outcome of biological interaction, models of species abundance distribution (SAD) allow us to infer how niche are apportioned. We use Tokeshi's SADs models and dominance and evenness index to test, using regression, how richness, biomass and evenness change along stress nutrition gradient defined by aluminium concentration in soil. We verified a negative linear pattern between richness and nutrition stress gradient with semideciduous forest fragment at extreme of lesser stress gradient and cerradão at opposite extreme gradient. The biomass showed a "U" shape pattern along the same gradient. The index and SADs models showed similar result measuring dominance of few species at extremes of gradient, however only Evar index measured more evenness between extremes of gradient. Our results allow inferring that such gradient war important to define community richness and biomass. The models and index allowed testing the patterns of niche apportionment, however its do not allowed us confirm the process of niche apportionment / Mestrado / Ecologia / Mestre em Ecologia

Abstract Plants and soil organisms are closely linked. Plants are the sole source of carbon in the soil and soil organisms are responsible for recycling of nutrients, making them available for plant growth. To understand the function of a system, it is important to understand the interactions between the soil and plants. These interactions have mainly been studied in temperate areas, with few studies in the arctic and subarctic. The aim of this thesis was to investigate the effect of ecological disturbances in sub- and low-arctic grasslands on soil organisms and plant-soil feedback relationships. The effect of removal of vegetation, replanting of a local plant species, and different components of grazing (trampling, defoliation and return of nutrients) on soil decomposer organisms were studied. Whether short term effects of defoliation depended on plant species community was also studied, as well as whether defoliation in the field could create changes in the soil system systems that affect the growth of seedlings. Experiments were conducted under both controlled greenhouse conditions and in field sites. The results showed that physical disturbance (removal of vegetation and trampling) reduced the abundance and diversity of soil biota. Defoliation increased soil decomposer abundance in the short term. Plant species composition did not affect soil biota and only in a few cases did it changes their responses to defoliation. In the long-term, effects of fertilization and defoliation on the soil biota were context-dependent. However, defoliation did create changes in the soil that reduced the growth of seedlings planted into the soil. Furthermore, plant species community and spatial heterogeneity (revealed by blocking) had important effects on the soil communities.

La gestion et le suivi des écosystèmes dans les parcs nationaux et provinciaux visent essentiellement la préservation de leur intégrité écologique et de leur biodiversité. Toutefois, le portrait de la biodiversité aquatique dans les lacs des parcs nationaux du Québec est encore incomplet, en particulier pour les microorganismes qui forment la base des réseaux trophiques. Ce mémoire présente les résultats de la première étude d’envergure sur le zooplancton de 14 lacs du parc national du Mont-Tremblant (PNMT, Québec), intégrant des connaissances nouvelles sur la biodiversité et la structure taxonomique et fonctionnelle du zooplancton et l’application d’indices biotiques. Le but final est d’établir les relations entre la structure du zooplancton et l’état trophique des lacs afin de mieux évaluer leur niveau d’intégrité biologique. La diversité et la structure du zooplancton et les patrons de dominance des espèces dans les lacs du PNMT sont similaires à ceux observés dans les lacs du Bouclier Canadien en Ontario et au Québec. On distingue plusieurs groupes de lacs sur la base des espèces de rotifères (Kellicottia longispina et Conochilus unicornis) et de cladocères de petite (Bosmina, Diaphanosoma birgei) ou grande (Daphnia catawba, Holopedium gibberum) taille. Les lacs se répartissent le long d’un gradient inverse dans l’abondance des rotifères et des copépodes calanoïdes. Ces taxons présentent le meilleur potentiel de bioindicateurs de l’état trophique des lacs du PNMT. L’altitude, la taille et la profondeur des lacs et la présence de l’Omble de fontaine ou du Grand brochet ont un effet structurant sur le zooplancton. Ils permettent de classer les lacs du PNMT en deux groupes bien distincts : i) les lacs oligotrophes à Omble de fontaine riches en copépodes calanoïdes (Allen, Herman, du Brochet, Obéron et Trap), ii) les lacs oligo-mésotrophes à Grand brochet (avec des cyprins planctivores) plus riches en rotifères (surtout Desjardins, Savane, Houdet, Monroe et Rossi). / The application of environmental management plans and monitoring programs in national parks aims essentially to preserve biodiversity and ecological integrity of natural ecosystems for future generations. However, knowledge on aquatic biodiversity in national parks in Quebec is still incomplete, especially for the microorganisms at the base of food webs. This research presents the first important study on the zooplankton communities in 14 lakes of the Parc National du Mont-Tremblant (PNMT, Québec), including new knowledge on the biodiversity components, the taxonomic and functional structure of zooplankton communities, and the application of biotic indexes. The ultimate goal is to establish the relationships between trophic state and both zooplankton community structure and the derived biotic indexes, in order to evaluate the ecological integrity of the study lakes. Biodiversity components and zooplankton community structure of the PNMT lakes are similar to those observed in Canadian Shield lakes in Ontario and Québec. We could distinguish two groups of lake based on rotifer species (Kellicottia longispina and Conochilus unicornis) and on cladoceran species of small (Bosmina, Diaphanosoma birgei) or large (Daphnia catawba, Holopedium gibberum) size. Lakes are distributed along inverse gradients of the relative abundance of rotifers and calanoid copepods. These taxa offer the best potential as bioindicators of the trophic state and ecological integrity of PNMT lakes. Three main factors (altitude, area and depth of lakes, and the presence of brook trout or northern pike) are structuring zooplankton community in two main groups: i) the oligotrophic lakes with the brook trout dominated by the calanoid copepods (Allen, Herman, du Brochet, Obéron and Trap), ii) the mesotrophic lakes with the northern pike (including planktivore cyprinids) dominated by rotifers (mainly Desjardins, Savane, Houdet, Monroe and Rossi).

Deux facteurs principaux, une fois combinés, permettent de comprendre l’assemblage des communautés, soient i) l’environnement (abiotique et biotique), qui agit comme un filtre sélectionnant les espèces les mieux adaptées aux conditions données, et ii) les traits fonctionnels, sur lesquels s’effectue ce filtrage environnemental puisqu’ils peuvent conférer des avantages sélectifs sous diverses conditions. Il est donc essentiel d’établir des relations fiables entre les conditions environnementales et la structure fonctionnelle des communautés afin de pouvoir identifier et comprendre les mécanismes régissant l’assemblage des communautés. Cependant, plusieurs facteurs tels que les interactions entre variables à différentes échelles spatiales peuvent complexifier la situation et c’est pourquoi, malgré une quantité grandissante d’études sur le sujet, les processus d’assemblage des communautés restent difficiles à définir et à généraliser. Cette thèse vise donc à i) mieux définir et quantifier les relations trait-environnement des systèmes d’herbacées au travers de différentes échelles spatiales et ii) déterminer l’influence de ces relations sur l’assemblage des communautés et le fonctionnement des écosystèmes. Pour réaliser ces objectifs, j’ai travaillé avec les données de programmes ayant collecté des données taxonomiques et fonctionnelles sur les communautés d’herbacées à travers la France (DivHerbe et DivGrass) et, à moindre mesure, l’Europe (VISTA). Ces bases de données couvrent donc de larges gradients climatiques régionaux ainsi que des gradients environnementaux plus locaux relatifs à la qualité des sols et aux perturbations.J’ai d’abord testé l’importance de considérer à la fois des variables environnementales locales et régionales ainsi que leurs interactions pour déterminer la structure fonctionnelle et taxonomique des communautés. J’ai ensuite étudié comment l’importance relative des processus menant soit à la convergence ou à la divergence fonctionnelle peut changer le long d’une succession, puis comment ces deux types de processus influencent notre capacité à prédire l’assemblage des communautés à partir des traits fonctionnels. Finalement, j’ai présenté comment les résultats au niveau des communautés peuvent être utiles pour étudier le niveau des écosystèmes. Les résultats de cette thèse démontrent que les variables climatiques régionales interagissent fortement avec les variables environnementales locales pour influencer les processus locaux déterminant l’assemblage des communautés. Évaluer le contexte régional semble donc nécessaire afin d’éviter des interprétations erronées des patrons d’assemblage observés. Travaillant avec ces deux niveaux de variation environnementale, une dissociation important entre la variation taxonomique et fonctionnelle des communautés a été mise à jour, reflétant l’importance de considérer plusieurs facettes de biodiversité pour comprendre la dynamique des communautés. Les résultats ont aussi démontré que les processus d’assemblage menant à la convergence et à la divergence ont un impact très différent et prédictible sur les relations liant les traits et les abondances des espèces, c’est-à-dire notre capacité à prédire l’assemblage des communautés à partir des traits. Finalement, toutes ces notions, relatives aux relations trait-environnement et à l’assemblage des communautés basé sur les traits, ont été utilisées dans un contexte de biogéographie fonctionnelle. Il a été démontré qu’il était possible de construire des cartes de valeurs de traits fonctionnels dans les prairies permanentes à l’échelle de la France, à partir de variables environnementales. Certaines propriétés écosystémiques ont ensuite pu être prédites à partir de ces cartes. Ces travaux ont donc permis d’illustrer les défis à surmonter pour utiliser nos connaissances de l’écologie fonctionnelle en vue d’une conservation et d’une exploitation viables de nos écosystèmes. / There are two main factors which, combined together, allow understanding community assembly : i) the environment (both abiotic and biotic), which acts as a filter selecting species according to how well-adapted they are to given conditions, and ii) functional traits, on which this environmental filtering occurs since they represent species adaptations to particular conditions. It is thus essential to establish reliable relationships between environmental conditions and the functional structure of communities in order to identify and understand the mechanisms driving community assembly. However, several factors such as cross-scale interactions between environmental variables complicate the situation. This is why, despite a growing body of studies on the subject, processes of community assembly are still poorly understood and are difficult to generalize. The purpose of this thesis is to i) better define and quantify the trait-environment relationships in herbaceous systems across different spatial scales and ii) determine the influence of those relationships on community assembly and on ecosystem functioning. To realize these objectives, I worked with data from programs which assembled taxonomic and functional data on herbaceous communities across France (DivHerbe and DivGrass) and, to a lesser extent, Europe (VISTA). These databases thus cover large regional climatic gradients, as well as more local environmental gradients related to soil quality and disturbances. I first tested the importance of simultaneously considering local and regional environmental variables as well as their interactions to determine the taxonomic and functional structure of communities. Then, I studied how the relative importance of processes leading to either functional convergence or divergence can change along a successional gradient, and how these two types of processes influence our ability to predict community assembly from functional traits. Finally, I presented how the results at the community-level can be used to study the ecosystem-level. The results of this thesis demonstrate that regional climatic variables strongly interact with local environmental variables in driving the local processes responsible for community assembly. Assessing the regional context is thus necessary in order to avoid erroneous interpretations of observed assembly patterns. Working with those two levels of environmental variation, important discrepancies were found between taxonomic and functional variations across communities, reflecting the importance of considering several aspects of biodiversity in order to understand community dynamics. The results also demonstrated that the assembly processes leading to functional convergence and divergence have a very different and predictable impact on the relationships between traits and species relative abundances, i.e. on our ability to predict community assembly from traits. Finally, these notions related to trait-environment relationships and to trait-based community assembly were used in a functional biogeography framework: It was possible to build maps of functional traits values in permanent grasslands across France using environmental variables. These maps then allowed predicting particular ecosystem properties. Thus, this work allowed illustrating some challenges that we are facing in using our knowledge in functional ecology to build sustainable conservation and exploitation plans for our ecosystems.

Epiphytes are organisms attached to plants and are responsible for the majority of primary productivity in many aquatic systems. While epiphytes serve as a valuable food resource to herbivores, they may prove deleterious to the host plant by competing for light and nutrients, as well as increasing sheer stress. This study evaluated the impacts of nutrient additions, nitrogen and phosphorus, on the epiphytic algal community on Spartina alterniflora over the course of two growing seasons. Three nutrient treatments (N, P, and N+P) and one control treatment were placed in a salt marsh in the Tolomato River during the growing seasons of 2011 and 2012. To assess community development, we examined biomass, ash-free dry mass (AFDM), chlorophyll-a levels, cell counts, and community diversity by algal division. The nutrient additions did not significantly alter any of the measured parameters in either sampling year. However, the sampling month did have a significant (pa, and community composition. A total of 155 infrageneric taxa were identified. Biomass tended to be dominated by diatoms and red algae, while cyanobacteria were most abundant. In both years, biomass was highest in the spring with a second smaller pulse in the fall. Conversely, chlorophyll-a levels varied between the years and did not show the same monthly patterns as AFDM. A laboratory study subjecting S. alterniflora to the same nutrient additions also found no significant effects of increased nutrients, but did observe temporal changes in biomass and chlorophyll-a levels. Overall, epiphytic growth was not influenced by nutrient additions in this study suggesting that this and other similar salt marsh systems may be resilient to anthropogenic eutrophication. Instead, other factors, such as light and herbivory, likely played a key role in determining epiphytic algal growth and community composition.

Submitted by Renata Lopes (renatasil82@gmail.com) on 2016-01-22T10:04:57Z No. of bitstreams: 1 antonioteixeiradepaulajunior.pdf: 1054244 bytes, checksum: 9a7fcd05eea6d0d7ff59020571cb06a7 (MD5) / Approved for entry into archive by Adriana Oliveira (adriana.oliveira@ufjf.edu.br) on 2016-01-25T18:49:05Z (GMT) No. of bitstreams: 1 antonioteixeiradepaulajunior.pdf: 1054244 bytes, checksum: 9a7fcd05eea6d0d7ff59020571cb06a7 (MD5) / Made available in DSpace on 2016-01-25T18:49:05Z (GMT). No. of bitstreams: 1 antonioteixeiradepaulajunior.pdf: 1054244 bytes, checksum: 9a7fcd05eea6d0d7ff59020571cb06a7 (MD5) Previous issue date: 2014-02-24 / CAPES - Coordenação de Aperfeiçoamento de Pessoal de Nível Superior / A fauna bromelícola propicia um alto potencial para o entendimento da ecologia de paisagens. Com a expansão das atividades agropecuárias, remanescentes florestais têm sido reduzidos a pequenas manchas de vegetação, tornando as espécies mais vulneráveis aos efeitos decorrentes dessa modificação da paisagem. O presente estudo visa caracterizar a estrutura das comunidades de invertebrados aquáticos em quatro morfoespécies de bromélias situadas entre 0 e 1,9m de altura em relação ao solo em um gradiente de distância da borda em direção ao interior de fragmentos florestais da Mata Atlântica que apresentam diferentes tamanhos, formas e distâncias entre si e estão localizados próximos a áreas de pastagens e florestas plantadas, em uma região da Serra da Mantiqueira (Brasil). Os grupos mais abundantes foram Ostracoda, Culicidae, Chironomidae e Scirtidae. Maior diversidade e riqueza foram encontradas nos fragmentos menos isolados, provavelmente pela maior facilidade de dispersão entre os indivíduos. A riqueza observada e a diversidade de invertebrados foram similares nas diferentes distâncias da borda, sugerindo ausência de influência do gradiente sobre a fauna de invertebrados bromelícolas nos fragmentos estudados. Com relação ao tipo de matriz, tanto a abundância como a riqueza observada foram similares em matriz de floresta plantada e pastagem. A composição de táxons também não variou em relação ao tipo de matriz. A diversidade, a riqueza e a composição faunística não tiveram relação com a altura da bromélia em relação ao solo, a morfoespécie e o volume de água coletado, também não houve diferença entre as bromélias do início das coletas e as do do final. Foi possível concluir que a estrutura e distribuição de invertebrados bromelícolas não foram influenciadas pelos efeitos do gradiente de distância nem pelo tipo de paisagem do entorno. / The bromeliad fauna provides a high potential to understanding the landscape ecology. With the expansion of agricultural activities, forest remnants have been reduced to small patches of vegetation, making the species more vulnerable to the effects of this landscape modification. This study aims to characterize the community structure of aquatic invertebrates in four morphospecies of bromeliads between 0 and 1.9 m height above the ground in a gradient from the edge to the interior of forest fragments of Atlantic Forest that have different sizes, shapes and distances apart and are located near areas of grassland and planted forests in a region of Serra da Mantiqueira (Brazil). The most abundant groups were Ostracoda, Culicidae, Chironomidae and Scirtidae. Greater diversity and richness were found in less isolated, probably by the ease of dispersion among fragments. The richness and diversity of invertebrates observed were similar in different distances from the edge, suggesting the absence of influence of the gradient on the invertebrate bromeliad fauna in the studied fragments. Regarding the type of matrix, both the abundance and richness observed were similar in planted forest and pasture. Nor does the composition of taxa varied in relation to the type of matrix. The diversity, richness and faunal composition were not associated with the bromeliad height from the ground, the morphospecies and the water volume gathered, there was no difference between the bromeliads of the beginning of the research and of the end. It was concluded that the structure and distribution of the bromeliad invertebrates were not influenced by the effects of the gradient away or by the type of the surrounding landscape.

The investigation of the hidden metric space behind complex network topologies is a fervid topic in current network science and the hyperbolic space is one of the most studied, because it seems associated to the structural organization of many real complex systems. The popularity-similarity-optimization (PSO) model simulates how random geometric graphs grow in the hyperbolic space, generating realistic networks with clustering, small-worldness, scale-freeness and rich-clubness. However, it misses to reproduce an important feature of real complex networks, which is the community organization. The geometrical-preferential-attachment (GPA) model was recently developed in order to confer to the PSO also a soft community structure, which is obtained by forcing different angular regions of the hyperbolic disk to have a variable level of attractiveness. However, the number and size of the communities cannot be explicitly controlled in the GPA, which is a clear limitation for real applications. Here, we introduce the nonuniform PSO (nPSO) model. Differently from GPA, the nPSO generates synthetic networks in the hyperbolic space where heterogeneous angular node attractiveness is forced by sampling the angular coordinates from a tailored nonuniform probability distribution (for instance a mixture of Gaussians). The nPSO differs from GPA in other three aspects: it allows one to explicitly fix the number and size of communities; it allows one to tune their mixing property by means of the network temperature; it is efficient to generate networks with high clustering. Several tests on the detectability of the community structure in nPSO synthetic networks and wide investigations on their structural properties confirm that the nPSO is a valid and efficient model to generate realistic complex networks with communities.

No description available.

The dark kangaroo mouse, Microdipodops megacephalus, is a sensitive species in the Great Basin Desert. This thesis explores the structure of desert rodent communities of the Great Basin to better understand M. megacephalus' place in the community and the conditions that promote large and stable populations. To determine community structure, I used nestedness analysis to evaluate 99 communities of nocturnal granivorous rodents. I found that the community structure was non-random, indicating the existence of assembly rules and ecological constraints. I also found that M. megacephalus was the second most vulnerable species in the community. To explore the correlation between species diversity and relative abundance, I performed regression analyses on M. megacephalus and five commonly co-occurring species of the nocturnal granivore guild: Perognathus longimembris (little pocket mouse), Perognathus parvus (Great Basin pocket mouse), Dipodomys ordii (Ord's kangaroo rat), Dipodomys microps (chisel-toothed kangaroo rat), and Peromyscus maniculatus (deer mouse). Results showed a positive correlation between rodent species diversity and relative abundance for M. megacephalus, P. longimembris, P. parvus, and D. microps, and a negative correlation for D. ordii and P. maniculatus. To further understand community composition, I ran interspecific association analyses based on presence-absence data for the six species using chi-square to determine strength of interspecific associations. I found positive interspecific associations between M. megacephalus and P. parvus, between P. longimembris and P. parvus, between P. longimembris and D. microps, and between D. microps and P. maniculatus, and a negative association between P. longimembris and P. maniculatus. A species cluster dendogram with respect to sites in common further supports the interspecific association results. A site cluster dendogram with respect to species abundances implies that dune habitat promotes diversity but not uniformity. All results indicate that M. megacephalus is more abundant and stable at sites with high species richness. The results also provide evidence for the existence of assembly rules, competition, and niche partitioning in desert rodent communities.