The work presented in this thesis concerns surface energy modification and patterning of the surfaces of conjugated polymers. Goniometry and Wilhelmy Balance techniques were used to evaluate the surface energy or wettability of a polymer’s surface; infrared reflectionabsorption spectroscopy (IRAS) was used to analyse the residuals on the surface as modified by a bare elastomeric stamp poly(dimethylsiloxane) (PDMS). The stamp was found to be capable of modifying a polymer surface. Patterning of a single and/or double layer of conjugated polymers on the surface can be achieved by surface energy controlled dewetting. Modification of a conjugated polymer film can also be carried out when a sample is subjected to electrochemical doping in an aqueous electrolyte. The dynamic surface energy changes during the process were monitored in-situ using the Wilhelmy balance method. This thesis also concerns studies of conjugated polymer-based optoelectronics, including light-emitting diodes (PLEDs), that generate light by injecting charge into the active polymer layer, and solar cells (PSCs), that create electrical power by absorbing and then converting solar photons into electron/hole pairs. A phosphorescent metal complex was doped into polythiophene to fabricate PLEDs. The energy transfer from the host polymer to the guest phosphorescent metal (iridium and platinum) complex was studied using photoluminescence and electroluminescence measurements performed at room temperature and at liquid nitrogen temperature. PSCs were prepared using low-bandgap polyfluorene copolymers as an electron donor blended with several fullerene derivatives acting as electron acceptors. Energetic match is the main issue affecting efficient charge transfer at the interface between the polymers and the fullerene derivatives, and therefore the performance of the PSCs. Photoluminescence, luminescence quenching and the lowest unoccupied molecular orbital (LUMO) together with the highest occupied molecular orbital (HOMO) of the active materials in the devices were studied. A newly synthesized fullerene, that could match the low-bandgap polymers, was selected and used as electron acceptor in the PSCs. Photovoltaic properties of these PSCs were characterised, demonstrating one of the most efficient polymer:fullerene SCs that generate photocurrent at 1 μm. / On the day of the defence the status of article number III was Manuscript and article VII was Accepted.

To better understand the physical and electronic properties of donor and acceptor-based structures used in organic electronic applications, a variety of oligothiophene and naphthalene diimide-based small conjugated molecules were designed, synthesized, and characterized. The materials were initially synthesized using oxidative copper-chloride coupling reactions, palladium-catalyzed amination reactions, Friedal-Crafts acylations, Negishi coupling reactions, and Stille coupling reactions. Once isolated, the physical properties of the compounds were characterized through a combination of X-ray crystal structure, thermogravimetric analysis, differential scanning calorimetry, UV-vis. absorption spectroscopy, cyclic voltammetry, and differential pulse voltammetry, along with comparison to quantum-chemical calculations. In some cases, the radical cations or radical anions were generated by chemical oxidation and analyzed by vis-NIR spectroscopy. Furthermore, the electronic properties of the materials were investigated through incorporation as solution-processed active layers in organic field-effect transistors. Multiple examples exhibited hole- and / or electron-transport properties with electron mobility values of up to 1.5 cm²V⁻¹s⁻¹, which is among the highest yet reported for an n-channel OFET based on a solution-processed small molecule.

The synthesis and characterization of two donor acceptor type conjugated polymers were investigated. The electrochemical properties were examined using cyclic voltammetry, spectroelectrochemistry and kinetic studies. The increase in the alkyl chain length attached to the fluorene unit was investigated by the corresponding electrochemical characteristics. The synthesis was carried out via Stille coupling of 4,7- dibromo-4&#039 / -(tert-butyl)spiro[benzo[d]imidazole-2,1&#039 / cyclohexane] and 2,5- bis(tributylstannyl)thiophene with 9,9-dihexyl-9H fluorene and 9,9-didodecyl-9H fluorene respectively. Both of the polymers were neutral state green polymers. They had optical band gaps of 2.46 and 2.54 eV respectively. Increasing the chain length resulted in an increase in solubility and processibility of the polymer but also an increase in the band gap. This was due to the increased bulkyness of the alkyl group, leading to a decrease in the effective conjugation and planarity. They both had distinctive &pi / -&pi / * transitions, band structure and backbone that provides oxidative doping. P1, with the shorter alkyl chain had a lower oxidation potential than P2. Neither of the polymers was capable of being n-doped. They were both multichromic, revealing colors from neutral state green to doped state blue.

ABSTRACT BIOACTIVE SURFACE DESIGN BASED ON CONDUCTING POLYMERS AND APPLICATIONS TO BIOSENSORS Ekiz, Fulya M. Sc., Department of Biotechnology Supervisor: Prof. Dr. Levent Toppare Co-Supervisor: Prof. Dr. Suna Timur June 2012, 88 pages An underlying idea of joining the recognition features of biological macromolecules to the sensitivity of electrochemical devices has brought the concept of biosensors as remarkable analytical tools for monitoring desired analytes in different technological areas. Over other methods, biosensors have some advantages including high selectivity, sensitivity, simplicity and this leads to solutions for some problems met in the measurement of some analytes. In this context, conducting polymers are excellent alternatives with their biocompatibility and ease of applicability for an efficient immobilization of biomolecules in preparing biosensors. Using several materials and arranging the surface properties of the electrodes, more efficient and seminal designs can be achieved. In this thesis, it is aimed to create new direct biosensors systems for the detection of several analytes such as glucose and pesticides thought to be harmful to the environment. Recently synthesized conducting polymers (polyTBT) / (poly(2-dodecyl-4,7-di(thiophen-2-yl)-2H-benzo[ d][1,2,3]triazole) and (poly(TBT 6 -NH2 ) / poly(6-(4,7-di(thiophen-2-yl)-2H-benzo[d][1,2,3]triazol-2-yl)hexan-1-amine) were utilized as a matrices for biomolecule immobilization. After successful electrochemical deposition the polymers on the graphite electrode surfaces, immobilization of glucose oxidase (GOx) and choline oxidase (ChO) were carried out. Amperometric measurements were recorded by monitoring oxygen consumption in the presence of substrates at -0.7 V. The optimized biosensors showed a very good linearity with rapid response times and low detection limits (LOD) to glucose and choline. Also, kinetic parameters, operational and storage stabilities were determined. Finally, designed biosensor systems were applied for glucose and pesticide detection in different media.

Conjugated polymers and oligomers are great materials for use in the next generation devices namely organic field effect transistors, light emitting diodes and polymeric solar cells. Apart from having the potential for developing power-efficient, flexible, robust and inexpensive devices, conjugated polymers can also be tuned by molecular design to optimize device characteristics. One key problem for the full commercial exploitation of conjugated polymers is that the charge carrier mobility of the state-of-the-art polymer semiconductors is much lower than required for many applications. The performance of the devices is strongly dependent on the molecular structure and supermolecular assembly of the conjugated polymer chains. This thesis covers our attempts to design molecular structure to control and improve the solid state properties of conjugated polymers. The relative placement of side chains along the backbone has a great influence on the solid state ordering of conjugated polymers. Poly(2,5-disubstituted-1,4-phenylene ethynylene)s (PPE)s, an important class of conjugated polymers, are generally synthesized by Pd-catalyzed coupling polymerizations of appropriately substituted diiodo and diethynyl benzenes (i.e., A-A and B-B type monomers). In asymmetrically substituted PPEs, this results in an irregular substitution pattern of the side chains along the polymer backbone. We report a new synthetic approach to prepare regioregular unsymmetrically substituted PPEs by polymerization of 4-iodophenylacetylenes (i.e., A-B type monomer). We provide a detailed discussion of various approaches to the synthesis of PPEs with different regioregularities and provide a description of the differences between regioregular and regiorandom analogs. The effect of regioregularity becomes even more important when the two side chains are very dissimilar or amphiphilic. We explore the effect of relative placement hydrophobic (dodecyloxy) / hydrophilic (tri(ethylene glycol) and hydrophobic (dodecyloxy)/fluorophilic (fluoroalkyl) side chains along the poly(1,4-phenylene ethynylene) backbone. We found that the regioregular substitution of the polymer backbone provides a structure in which the side chains segregate to afford a Janus-type structure. The regioregular polymer chains pack more densely in a monolayer at the air-water interface, and pack into a bilayer in the solid state to form a highly crystalline material. Pentacenes are very important organic molecules for use as semiconductor in oFETs due to their low band gap and high field effect mobility. One approach to reduce the bandgap of a polymeric system and improve performance is to include low bandgap small molecules into the conjugated backbone. A new copolymer system consisting of pentacene and terthiophene was developed and its optical and electronic properties along with its stability were evaluated. We report the use of ultrasonication of P3HT as a novel operationally-simple process to significantly improve the field effect mobility of P3HT-based FETs, thereby potentially eliminating the need for dielectric surface modifications or further processing of the device. Investigation of the sonicated polymer samples by number of characterization techniques indicates that ultrasonication leads to aggregation and ordering of the P3HT chains resulting in increase in the mobility.

This thesis described the synthesis and characterization of new perylene diimide (PDI)-based photonic and electronic materials. In the first part of this thesis, PDI-based polynorbornenes, including PDI-grafted homopolymers and block-copolymers (BCPs) were synthesized and characterized as alternative acceptors for fullerenes for organic electronics. It was found that the PDIs on the polymer side-chains affect π-π stacking with the neighboring PDIs, which has implications for the use of these materials for organic field-effect transistors (OFETs) and organic photovoltaic devices (OPVs). It should be noted that the performance of solar cell based on these materials was poor, like other similar materials. The major reasons could be the challenge in controlling the molecular alignment of the PDI-based materials, which leads to lower electron mobilities in films compared to devices with fullerene-based acceptors. One PDI-grafted BCP showed better OPV performance compared to the other BCPs and respective homepolymer blends, presumably due to favorable morphology. In the second part of this thesis, photo-induced charge-separation in blends of poly-3-hexyl-thiophene (P3HT) and various PDI derivatives have been studied. Probing of long-lived photo-generated PDI radical anions provided insight on these photo-induced processes and their use for OPVs. In the third part of this thesis, the use of photo-generated PDI radical-anion absorption was shown to be effective for optical limiting of nanosecond laser pulses between 650 - 800 nm. In Chapter 5, an effective approach for two-photon absorption (2PA)-induced optical limiting using donor-PDI dyads through which donors and acceptors can be independently chosen to maximize optical suppression at particular wavelengths has been demonstrated. In Chapter 6, conjugated polymers with PDI pendants and poly(carbazole-alt-2,7-fluorene) main-chains were synthesized for optical limiting using the photo-generated PDI radical anion via PDI aggregate excitation and/or 2PA from the polymer backbones. It was also found that nitro-phenyl group or similar derivatives could be good candidates to incorporate into those donor-conjugated polymers, which have significant overlap between their 2PA band and respective polaron absorptions for 2PA-indced optical limiting. / Thesis advisor has approved the addition of errata to this item. Corrections were made to pages 95, 98 and 101.

Conjugated polymers comprise some of the most promising materials for new technologies such as organic field effect transistors, solar light harvesting technology and sensing devices. In spite of tremendous research initiatives in materials chemistry, the potential to optimize device performance and develop new technologies is remarkable. Understanding relationships between the structure of conjugated polymers and their electronic properties is critical to improving device performance. The design and synthesis of new materials which self-organize into ordered nanostructures creates opportunities to establish relationships between electronic properties and morphology or molecular packing. This thesis details our progress in the development of synthetic routes which provide access to new classes of conjugated polymers that contain dissimilar side chains that segregate or dissimilar conjugated blocks which phase separate, and summarizes our initial attempts to characterize these materials. Poly(1,4-phenylene ethynylene)s (PPEs) have been used in a variety of organic electronic applications, most notably as fluorescent sensors. Using traditional synthetic methods, asymmetrically disubstituted PPEs have irregular placement of side chains on the conjugated backbone. Herein, we establish the first synthetic route to an asymmetrically substituted regioregular PPEs. The initial PPEs in this study have different lengths of alkoxy side chains, and both regioregular and regiorandom analogs are synthesized and characterized for comparison. The design of amphiphilic structures provides additional opportunities for side chains to influence the molecular packing and electronic properties of conjugated polymers. A new class of regioregular, amphiphilic PPEs has been prepared bearing alkoxy and semifluoroalkoxy side chains, which have a tendency to phase separate. Fully conjugated block copolymers can provide access to interesting new morphologies as a result of phase separation of the conjugated blocks. In particular, donor-acceptor block copolymers that phase separate into electron rich and electron poor domains may be advantageous in organic electronic devices such as bulk heterojunction solar cells, of which the performance relies on precise control of the interface between electron donating and accepting materials. The availability of donor-acceptor block copolymers is limited, largely due to the challenges associated with synthesizing these materials. In this thesis, two new synthetic routes to donor-acceptor block copolymers are established. These methods both utilize the catalyst transfer condensation polymerization, which proceeds by a chain growth mechanism. The first example entails the synthesis of a monofunctionalized, telechelic poly(3-alkylthiophene) which can be coupled to electron accepting polymers in a subsequent reaction. The other method describes the first example of a one-pot synthesis of a donor-acceptor diblock copolymer. The methods of synthesis are described, and characterization of the block copolymers is reported.

<p>Label-free detection of DNA has been successfully demonstrated on field effect transistor (FET) based devices. Since conducting organic materials was discovered and have attracted more and more research efforts by their profound advantages, this work will focus on utilizing an organic field effect transistor (OFET) as DNA sensor.</p><p>An OFET constructed with a transporting fluidic channel, WetOFET, forms a fluid-polymer (active layer) interface where the probe DNA can be introduced. DNA hybridization and non-hybridization after injecting target DNA and non-target DNA were monitored by transistor characteristics. The Hysteresis area of transfer curve increased after DNA hybridization which may be caused by the increasing electrostatic screening induced by the increasing negative charge from target DNA. The different morphology of coating surface could also influence the OFET response.</p>

Tyrimo tikslas. Ištirti ir įvertinti padidintos biologinės vertės maisto produktų (mineralinio vandens „Tichė“ ir rūgpienio, praturtinto konjuguota linolo rūgštimi ir probiotinėmis kultūromis) įtaką 2007/ 2008 m.m. besimokiusių Vilniaus universiteto Medicinos fakulteto II-o kurso Medicinos studijų programos studentų kai kuriems kraujo laboratoriniams rodikliams. Metodai. Vilniaus universiteto ligoninės Santariškių klinikų LDC buvo atlikti kraujo laboratoriniai tyrimai. Siekiant įvertinti vartotų padidintos biologinės vertės maisto produktų galimą poveikį organizmo virškinimo sistemos funkcijoms, buvo sudarytos anketos. Siekiant įvertinti, ar papildomai vartotas maistas turėjo įtakos kraujo biocheminiams rodikliams, buvo atlikti studentų faktinės mitybos tyrimai pagal standartinę 24 valandų apklausos metodiką. Duomenų suvedimui ir analizei panaudotos MICROSOFT EXCEL 2003, SPSS 12,0 programos. Rezultatai ir išvados. Asmenų, kurie vartojo mineralinį vandenį „Tichė“, jonizuoto Ca koncentracija kraujo plazmoje patikimai padidėjo, o kontrolinio bandinio metu, kai buvo vartojamas vien tik šaltinio vanduo, tiek jonizuoto Ca, tiek ir bendra Ca koncentracijos patikimai mažėjo. Tirtieji Medicinos fakulteto studentai pakankamai gerai žino, kiek reikėtų suvartoti geriamo vandens per parą ir supranta jo reikšmę organizmo fiziologinėms funkcijoms. Didžiausia dalis respondentų (net 67,9 proc.) gėrimui vartojo vandentiekio vandenį, tačiau, jeigu vandenį pirko parduotuvėse, 81,8 proc... [toliau žr. visą tekstą] / Purpose of the analysis. To investigate and to evaluate the influence of food products with increased biological value (“Tichė” mineral water and sour milk enriched with conjugated linoleic acid and probiotic cultures) on some laboratory blood test results of students who have attended the second year of Medicine studies at the Faculty of Medicine of Vilnius University in 2007/ 2008. Methods. Laboratory blood examinations were performed in the LDC of Vilnius University Hospital Santariškių Klinikos. In order to evaluate the possible effect of food products with increased biological value on digestive functions of the organism, questionnaires were distributed. In order to find out whether the additionally consumed food had any influence on biochemical blood indicators, actual student nutrition analyses based on standard 24-hour survey methodology were performed. Programs used for data processing and analysis were MICROSOFT EXCEL 2003, and SPSS 12 0. Results and conclusions. The ionized Ca concentration in the blood plasma of persons that were using “Tichė” mineral water increased reliably, while both ionized Ca and overall Ca concentrations were decreasing during a control test when only spring water was used. The examined medical students were sufficiently aware of the daily water amount that should be consumed and understand its significance to the physiological functions of the body. The majority of respondents (67.9 percent) were drinking tap water; however, if the water... [to full text]

In this thesis methodological developments have been made for the description of flexible conjugated dyes in room temperature spectrum calculations. The methods in question target increased accuracy and efficiency by combining classical molecular dynamics (MD) simulations with time-dependent response theory spectrum calculations. For absorption and fluorescence spectroscopies a form of conformational averaging is used, where the final spectrum is obtained as an average of spectra calculated for geometries extracted from ground and excited state MD simulations. For infrared and Raman spectroscopies averaged spectra are calculated based on individual spectra, obtained for zero-temperature optimized molecular structures, weighted by conformational statistics from MD trajectories. Statistics for structural properties are also used in both cases to gain additional information about the systems, allowing more efficient utilization of computational resources. As it is essential that the molecular mechanics description of the system is highly accurate for methods of this nature to be effective, high quality force field parameters have been derived, describing the molecules of interest in either the MM3 or CHARMM force fields. These methods have been employed in the study of three systems. The first is a platinum(II) actylide chromophore used in optical power limiting materials, for which a ultraviolet/visible absorption spectrum has been calculated. The second is a family of molecular probes called luminescent conjugated oligothiophenes, used to detect and characterize amyloid proteins, for which both absorption and fluorescence spectra have been calculated. Finally, infrared and Raman spectra have been calculated for a group of branched oligothiophenes used in organic solar cells. In addition, solvation effects have been studied for conjugated poly\-eletrolytes in water, resulting in the development of two solvation models suitable for this class of molecules. The first uses a quantum meachanics/molecular mechanics (QM/MM) description, in which the solute mole\-cule is described using accurate quantum mechanical methods while the surrounding water molecules are described using point charges and polarizable point dipoles. The second discards the water entirely and removes the ionic groups of the solute. The QM/MM model provides highly accurate results while the cut-down model gives results of slightly lower quality but at a much reduced computational cost. Finally, a study of protein-dye interactions has been performed, with the goal of explaining changes in the luminescence properties of the LCO chromophores when in the presence of amyloid proteins. Results were less than conclusive.