The blue crab, Callinectes sapidus, represents an ecologically and economically important component of marine and estuarine ecosystems. In Florida, blue crab landings accounted for $9.6 million dollars during the 2010 fishing season. Accurate stock assessments for this valuable fishery are essential. Age is a critical biological component of accurate stock assessments; however, blue crabs and other crustaceans are especially difficult to age because of the complex nature of discrete growth. Biochemical extraction of an aging pigment, lipofuscin, was developed using blue crab eyestalks. The current study investigated the effects of freezing preservation on lipofuscin extracts and examined whether the extraction methodology, developed by Chesapeake Bay researchers, was useful for aging Tampa Bay blue crabs populations. Significant differences in lipofuscin index were found between samples frozen (2 weeks at -80°C) prior to analysis and those processed and assayed immediately (p < 0.001). Quarterly assays of the cohort of known-age individuals revealed a negative linear trend (y = -0.12x + 0.49, p < 0.001) in lipofuscin index over a 12-month period. This result suggests that extraction of lipofuscin is not appropriate for age determination of Florida blue crabs. Investigations into possible causes of the negative trend in lipofuscin suggest this method deserves further examination and refinement before it is acceptable as a reliable method for age determination in Florida blue crabs. Growth data of the known-age population collected during this study revealed that blue crabs in Tampa Bay can reach exploitable size in under sixth months and female crabs can reach sexual maturity within seven months of hatching. These growth patterns have the potential to enhance future Florida stock assessments.

Sandy beach ecosystems have been studied worldwide; however, ecological data are sparse for the extensive barrier islands of Florida. Accordingly, I investigated the feeding patterns of the ghost crab (Ocypode quadrata), a dominant omnivore inhabiting beaches along the Floridian coast. Density data was collected for ghost crabs and swash macroinfaunal prey. In addition, I utilized stable isotopes in conjunction with the mixing models IsoSource and SIAR to characterize diets of ghost crabs across three barrier islands in spring and summer 2011. Results showed that ghost crabs at Cayo Costa feed primarily on swash macroinfauna, while those from Anclote Key shifted their diet to one comprised primarily of semi-terrestrial amphipods. However, at Honeymoon Island, ghost crab isotopic signatures were best explained by a mixed diet of both macroinfauna and wrack-associated prey. The unique consumption of wrack fauna at Anclote Key co-occurs with comparatively low infaunal densities and biomass, and modified ghost crab behavior due to trait-mediated effects. My results are novel because they suggest that wrack-associated fauna may be an important food source for ghost crabs in certain beach regimes.

This thesis investigates the influence of predator movements upon habitat selection and foraging success. It deals with two very distinct datasets one from a marine system, the snow crab (Chionoecetes opilio) fishery, and the second from a freshwater system, an experimental rainbow trout (Oncorhynchus mykiss) aquaculture operation. Deriving a standardized measure of catch from logbook data is important because catch per unit effort (CPUE) is used in fisheries analysis to estimate abundance, but it some cases CPUE is a biased estimate. For the snow crab fishery, a relative abundance measure was developed using fisher movements and logbook data that reflected commercially available biomass and produced an improved relative abundance estimate. Results from the aquaculture dataset indicate that escaped farmed rainbow trout continue to use the cage site when waste feed is available, while native lake trout do not interact with the cage. Once access to waste feed is removed, both lake trout and escaped rainbow trout do not use the cage site. This thesis uses methods to identify patterns and behaviours using movement tracks to increase our understanding of predator habitat usage.

Our research involves the isolation and identification of the possible chemical compounds in black-eyed Susans that may be responsible for the olfactory attraction of the crab spider Misumenoides formosipes to the inflorescences of these plants. In olfactometric bioassays, 80% of 30 male spiders moved towards olfactory-only cues from R. hirta inflorescences over a water control (P = 0.0014). The bulk extract was separated using flash column chromatography (silica column) with a series of solvents. Spiders in olfactometer bioassays showed a significant preference for the fractions collected using 100% dichloromethane over the solvent-only control (P=0.039). The 100% dichloromethane pooled fractions were separated using solid phase extraction (SPE). Three compounds were isolated and identified using TLC, infrared and NMR spectroscopy. Two compounds were identified as contaminants, di(2-ethylhexyl) phthalate and erucamide, found in the flash column chromatography apparatus and SPE apparatus, respectively. A long-chain crystalline hydrocarbon wax was extracted from R. hirta inflorescences. Research shows that several insects use the lipids of the wax layer, specifically various long-chain alkanes and alcohols, as cues in host plant selection or as kairomones, chemical cues used in communication from one organism to another [3]. It also shows that the waxes can act as absorbents or release agents for biologically active material. Thus, the long-chain hydrocarbon wax interacting with the volatile components could play a major role in attracting the male crab spiders to the R. hirta inflorescences / Introduction and background -- Olfactory bioassay studies of M. formosipes -- Chromatographic separation of components in the 100% dichloromethane fractions -- Identification of the possible attractants in the 100% dichloromethane fractions using spectroscopic methods. / Department of Chemistry

This thesis investigates the influence of predator movements upon habitat selection and foraging success. It deals with two very distinct datasets one from a marine system, the snow crab (Chionoecetes opilio) fishery, and the second from a freshwater system, an experimental rainbow trout (Oncorhynchus mykiss) aquaculture operation. Deriving a standardized measure of catch from logbook data is important because catch per unit effort (CPUE) is used in fisheries analysis to estimate abundance, but it some cases CPUE is a biased estimate. For the snow crab fishery, a relative abundance measure was developed using fisher movements and logbook data that reflected commercially available biomass and produced an improved relative abundance estimate. Results from the aquaculture dataset indicate that escaped farmed rainbow trout continue to use the cage site when waste feed is available, while native lake trout do not interact with the cage. Once access to waste feed is removed, both lake trout and escaped rainbow trout do not use the cage site. This thesis uses methods to identify patterns and behaviours using movement tracks to increase our understanding of predator habitat usage.

The H.E.S.S. array is a third generation Imaging Atmospheric Cherenkov Telescope (IACT) array. It is located in the Khomas Highland in Namibia, and measures very high energy (VHE) gamma-rays. In Phase I, the array started data taking in 2004 with its four identical 13 m telescopes. Since then, H.E.S.S. has emerged as the most successful IACT experiment to date. Among the almost 150 sources of VHE gamma-ray radiation found so far, even the oldest detection, the Crab Nebula, keeps surprising the scientific community with unexplained phenomena such as the recently discovered very energetic flares of high energy gamma-ray radiation. During its most recent flare, which was detected by the Fermi satellite in March 2013, the Crab Nebula was simultaneously observed with the H.E.S.S. array for six nights. The results of the observations will be discussed in detail during the course of this work. During the nights of the flare, the new 24 m × 32 m H.E.S.S. II telescope was still being commissioned, but participated in the data taking for one night. To be able to reconstruct and analyze the data of the H.E.S.S. Phase II array, the algorithms and software used by the H.E.S.S. Phase I array had to be adapted. The most prominent advanced shower reconstruction technique developed by de Naurois and Rolland, the template-based model analysis, compares real shower images taken by the Cherenkov telescope cameras with shower templates obtained using a semi-analytical model. To find the best fitting image, and, therefore, the relevant parameters that describe the air shower best, a pixel-wise log-likelihood fit is done. The adaptation of this advanced shower reconstruction technique to the heterogeneous H.E.S.S. Phase II array for stereo events (i.e. air showers seen by at least two telescopes of any kind), its performance using MonteCarlo simulations as well as its application to real data will be described. / Das H.E.S.S. Experiment misst sehr hochenergetische Gammastrahlung im Khomas Hochland von Namibia. Es ist ein sogenanntes abbildendes atmosphärisches Cherenkov-Teleskopsystem welches in der 1. Phase, die im Jahr 2004 mit der Datennahme begann, aus vier identischen 13 m Spiegelteleskopen bestand. Seitdem hat sich H.E.S.S. als das erfolgreichstes Experiment in der bodengebundenen Gammastrahlungsastronomie etabliert. Selbst die älteste der mittlerweile fast 150 entdeckten Quellen von sehr hochenergetischer Gammastrahlung, der Krebsnebel, fasziniert immernoch Wissenschaftler mit neuen bisher unbekannten und unerwarteten Phänomenen. Ein Beispiel dafür sind die vor kurzem entdeckten sehr energiereichen Ausbrüche von hochenergetischer Gammastrahlung. Bei dem letzten deratigen Ausbruch des Krebsnebels im März 2013 hat das H.E.S.S. Experiment für sechs Nächte simultan mit dem Fermi-Satelliten, welcher den Ausbruch entdeckte, Daten genommen. Die Analyse der Daten, deren Ergebnis und deren Interpretation werden im Detail in dieser Arbeit vorgestellt. Während dieser Beobachtungen befand sich ein neues 24 m × 32 m großes Spiegelteleskop, das H.E.S.S. II- Teleskop, noch in seiner Inbetriebnahme, trotzdem hat es für eine dieser sechs Nächte an der Datennahme des gesamten Teleskopsystems teilgenommen. Um die Daten rekonstruieren und analysieren zu können, mussten die für die 1. Phase des Experiments entwickelten Algorithmen und die Software des H.E.S.S.- Experiments angepasst werden. Die fortschrittlichste Schauerrekonstruktionsmethode, welche von de Naurois und Rolland entwickelt wurde, basiert auf dem Vergleich von echten Schauerbildern, die mit Hilfe der Cherenkov-Kameras der einzelnen Teleskope aufgenommen wurden, mit Schauerschablonen die mit Hilfe eines semianalytischen Modells erzeugt wurden. Das am besten passende Bild und damit auch alle relevanten Schauerparameter, wird mit Hilfe einer pixelweisen Loglikelihood-Anpassung ermittelt. Die nötigen Änderungen um Multiteleskopereignisse, welche vom heterogenen H.E.S.S. Phase II Detektor gemessen wurden, mit Hilfe dieser fortschrittlichen Schauerrekonstruktionsmethode analysieren zu können, sowie die resultierenden Ergebnisse von MonteCarlo-Simulationen, als auch die Anwendung auf echte Daten, werden im Rahmen dieser Arbeit präsentiert.

The main focus of the current study was to quantify the chemical signals received by a blue crab (Callinectes sapidus) tracking a source in a laboratory flume. To make a direct linkage between tracking behavior and the odorant concentration signal, we developed a measurement system to quantify the instantaneous concentration field surrounding actively tracking blue crabs. A three-dimensional laser-induced fluorescence (3DLIF) system was designed and constructed to measure odorant concentrations around crabs tracking three source types: a continuous release with exit velocity matching the mean local velocity in the flume; a continuous release with a meander created by an upstream cylinder; and a pulsed release switching on and off and with the same mass flow rate as the other two plume types. The meandering and pulsed plumes were introduced to observe the effects of large-scale spatial (meandering) and temporal (pulsed) intermittency on crab tracking. Simultaneous with the chemical concentration measurements, crab position data was recorded for kinematic analysis during post-processing. In addition, concentration measurements were collected for the three plume types without crabs present in order to quantify the statistical characteristics of the plume structure The concentration signals arriving at the antennules and outer chemosensory organs, most notably the legs, were targeted due to the hypotheses that concentration bursts at the antennules mediate upstream movement and that spatial contrast at the leg chemosensors mediates turning. A sampling zone was placed in front of the crab's mouth parts and aligned with the crab carapace orientation to extract odorant bursts at the antennules. The data generally showed an increase in upstream walking speed when high concentration bursts arrive at the antennules location, which agrees with the hypothesis. Measurement of the odorant concentration at the outer chemosensors was less direct and involved placing a box upstream of the crab and sampled earlier in time in order to avoid shadowing interference. Based on the signal at the upstream sampling box, a general bias for turning was observed. Crabs casted transversely in response to the directional bias extracted from the upstream sampling box. A statistical analysis of crab behavioral response to concentrations at the antennules and outer chemosensors can be found in a (future) companion thesis written by Jennifer Page in the School of Biology. Data were also taken for the three plume types in the absence of blue crabs. The continuous plume average statistics displayed Gaussian behavior at nozzle centerline. The meandering plume data conformed to the meandering plume model of Gifford (1959), modified for an induced pseudo-periodic meander. The pulsed plume displayed characteristics intermediate between the cloud dispersion model (Townsend 1951, Chatwin and Sullivan 1979) and the Gaussian dispersion model for a continuous release. For the three plume types, the standard deviation of the concentration fluctuations was greater than the average concentrations, as time records consisted of intermittent high concentrations interspersed with concentrations close to zero.

This study investigates the reproductive strategies of the pill-box crab, Halicarcinus cookii on the Kaikoura Peninsula, New Zealand. Various aspects essential to understanding reproductive strategies were examined including growth, population dynamics, reproductive biology and mating behaviour. H. cookii exhibits obvious sexual dimorphism such that females develop wide abdomens forming brood chambers, and males tend to grow larger than females and have larger chelipeds in relation to body size. H. cookii allocates energy into growth and reproduction in separate phases of its life cycle where growth ceases as reproductive maturity begins due to a terminal/pubertal moult. Despite the presence of ovigerous females throughout the 15 month sampling period, the population was highly seasonal, with peaks in recruitment and growth occurring primarily during the winter months and peaks in numbers of mature individuals during the summer months. Reproductive output increased with body size in H. cookii, as larger females produced more eggs and larger males transferred more sperm than their smaller counterparts. Ovaries matured prior to the terminal/pubertal moult (anecdysis) and, in multiparous females, in synchrony with brood development, allowing females to produce broods in quick succession, maximising their reproductive output in their short life span (approximately 12-18 months, 6 months as an adult). Incubation duration of broods decreased as seawater temperature increased, suggesting that temperature is the primary cause of the seasonal population cycling. Sperm storage allowed females to produce at least 4 fertilised broods without re-mating. Some sperm mixing in the spermathecae appeared to occur and the ventral-type structure implies last male sperm precedence. Males therefore preferentially mated with females closest to laying a new brood and guarded them longer than other females to ensure their paternity. Guarding duration varied according to the sex ratio allowing males to maximise their reproductive output.

The mating behaviour and reproductive ecology of the big-handed crab Heterozius rotundifrons was studied at Kaikoura between November 1997 and December 1998. H. rotundifrons was found at mean densities of 7.6 per m² (± 1.4) within the middle and low shore levels and varied little between seasons. The variance! mean ratio indicated that males and females aggregated within these shore levels. The sex ratio was significantly female biased during the majority of the year. Allometric growth rates indicated that males and females reached sexual maturity at 11 mm carapace width (CW). In males, spermatozoa production occurred between 9-9.99 mm CW. Ovigerous females were present every month except February. The first broods of the year were produced in March which coincides with a decrease in the female gonado-somatic index (GSI). These broods were incubated for approximately nine months whereas broods produced in August were incubated for only five months. Female brood production appeared to be cyclical, alternating between a winter incubation period and a summer incubation period. The completed cycle takes approximately three years with two broods produced during the cycle. Fecundity increased with female size but egg mortality was quite high (19%). Instantaneous mortality rate increased with increasing brood development. Females mate when recently moulted (soft-shelled). Although females moulted through out the year, in small numbers, there was a peak in female moulting during October and November. The operational sex ratio (OSR) was male biased during all months of the year. Females released an attractant prior to moulting which initiated pre-copulatory mate guarding by the male. Once the female moulted, copulation occurred approximately 6 h later. Copulation lasted for approximately 3 h and was followed by a period of post-copulatory mate guarding. Males increased the duration of post-copulatory mate guarding if another male was present. Large males out competed small males for receptive females. Males used their large cheliped to subdue competitors and to provide protection for the soft female. Mate guarding was shown to reduce cannibalism from other females. Spermatozoa are packaged in spermatophores within the vas deferens of males but are quickly dehisced within the spermathecae (ventral-type) of newly mated females. Last male to copulate probably achieves the highest level of paternity. Postcopulatory mate guarding by the male was found and ejaculates were found in discrete packets within the spermatheca. Sperm competition appeared to be important because large males displaced small males during copulation, males left when a female was still receptive and the females could retain sperm between moults. It is concluded that H. rotundifrons probably has a polygynous mating system in which males compete for soft females (female centered competition)

Thesis (Ph. D.)--University of Oregon, 2007. / Typescript. Includes vita and abstract. Includes bibliographical references (leaves 179-196). Also available for download via the World Wide Web; free to University of Oregon users.