La diffraction des rayons X permet d’obtenir des informations sur la structure atomique et même sur la distribution de charges de composés sous forme cristalline, ce qui est d’une importance fondamentale pour la compréhension de leurs propriétés. Accéder expérimentalement à une description de la distribution de charges de systèmes macromoléculaires reste rarement possible malgré les améliorations techniques. Pour pallier cette limite, la transférabilité des paramètres de distributions de charges est un moyen fiable d’obtenir pour ces systèmes un modèle estimé et d’en déduire leurs propriétés électrostatiques. Les résultats présentés dans ce travail de thèse s’intègrent dans une dynamique visant à étendre les méthodes initialement réservées pour l’étude des petites molécules aux systèmes macromoléculaires. Il s’articule autour du développement de la suite de logiciels MoPro et de la banque de données ELMAM (Experimental Library of Multipolar Atom Model) pour l’étude des énergies des interactions électrostatiques au sein du site actif de complexes enzyme-inhibiteur. L’étude du fidarestat, un inhibiteur de l’holoenzyme aldose réductase, réalisée à partir de données obtenues à très haute résolution, est exposée dans ce manuscrit et a servi notamment à l’amélioration de la banque ELMAM en vue de l’étude des complexes holoenzymes aldo-keto réductase. A cette occasion, la légitimité du recours aux modèles transférés de distribution de charges a été discutée pour la première fois par une estimation statistique des incertitudes sur les énergies d’interaction électrostatique entre enzyme et inhibiteur / X-ray diffraction allows to obtain information about atomic structure and charge density distribution of crystal-state compounds, which is of main interest for the understanding of their properties. Reaching experimentally charge density distribution description of macromolecular systems is rarely possible despite technical improvements. To get around this limit, the transferability of charge density distribution parameters is a reliable way to obtain for these systems estimated model and to deduce their electrostatic properties. Works introduced in this PhD thesis manuscript take part in the will of extending methods initially for study of small molecules to macromolecular systems. It is centered on the development of the MoPro software suite and of ELMAM database (Experimental Library of Multipolar Atom Model) for the study of electrostatic interaction energies in enzyme-inhibitor complexes’ active site. The study of fidarestat, an inhibitor of aldose reductase holoenzyme, performed using ultra-high resolution data, is exposed in this manuscript and allowed to improve ELMAM database for the study of electrostatic interaction in aldo-keto reductase holoenzyme complexes. Moreover, the legitimacy of using transferred charge density distribution models was discussed for the first time, thanks to statistical estimation of uncertainties on electrostatic interaction energies between enzyme and inhibitor

This thesis deals with the study of parameters of diaphragm discharge in liquids. NaCl solution of different conductivity was used as a conductive medium. Conductivities were adjusted in the range from 220 to 1000 µS cm-1. Two diagnostic methods were used for the study of plasma parameters. The first one was employed in the laboratory of plasma chemistry at Faculty of Chemistry, Brno University of Technology, namely the optical emission spectroscopy. The second method used for plasma diagnostics was the time resolved ICCD camera at the Laboratoire de Physique des Plasmas at the École Polytechnique in Paris. The reactor for the diagnostics by optical emission spectroscopy had the volume of 4 l, and it was made of polycarbonate. PET diaphragm was placed in the barrier separating the cathode and the anode space. Electrodes were made of titanium coated with platinum. Electric power source supplied a constant DC voltage of maximum 5 kV and electric current up to 300 mA. Spectrometer Jobin Yvon TRIAX 550 with CCD detector was used during the experiments in order to measure overview spectra within the range from 200 to 900 nm as well as OH molecular spectra and Hß line spectra. All spectra were scanned in both discharge polarities, i.e. at the cathode and the anode part of reactor. The basic parameters of the discharge plasma were calculated from the spectra, that means rotational and electron temperature and electron density. Another part of experiment consisted of measurements by the ICCD camera iStar 734. Two types of reactors were used. The first one was the same as the reactor for the measurements by the optical emission spectroscopy. The second one was also made of polycarbonate, but the volume of conductive solution was 110 ml, only. HV electrodes made of stainless steel were placed in this reactor. Ceramic diaphragm (Shapal-MTM) was used in both reactors. Diaphragms had different thickness and diameter of holes. ICCD camera acquired photographs with details of processes of the bubbles generation and discharge operation (propagation of plasma channels), depending on solution conductivity, dimensions of the diaphragm, and with respect to the electrode part of the reactor.

In the last few years a renewed interest has reappeared in materials that were highly investigated in the 50s-70s, like manganese perovskites, spinel chalcogenides and vanadium oxides. The first two classes of materials are nowadays intensively studied due to the colossal magnetoresistance effect, which is the magnetoresistance associated with a ferromagnetic-paramagnetic transition. Vanadium oxides are known to form many compounds and most of them undergo metal-to-insulator phase transitions, with a high increase in the electrical conductivity (MIT). Many technological applications derive from the variation of the physical properties around the phase transition temperature. Although many efforts have been done in order to understand their electronic structures and to elucidate the MIT mechanisms, the vanadium oxides are still matter of debate in science.The present study has been performed in order to understand the electronic structure of these very intriguing materials. The role of different dopants that induce strong changes in the electronic and magnetic properties has been investigated making use of two spectroscopic techniques, namely X-ray photoelectron and X-ray emission spectroscopy.

The details of the interplay between the electronic structure and the magnetic properties of matter represent a state of the art challenge. In the present work spectroscopic investigations on the electronic structure of some interesting materials are presented. The achieved information has been used in order to answer specific questions related to the magnetic behavior of the investigated materials. For the transition metal dicyanamide compounds it is shown that the electronic states arising from carbon and nitrogen remain roughly unchanged for all compositions. A model for the magnetic superexchange interaction was proposed. In this model the geometry of the crystallographic structure accounts for a particular interaction pattern while the occupancy of the 3d transition metal band is the factor which triggers the changeover from antiferromagnetic to ferromagnetic interaction. In the case of six-membered ferric-wheel molecules the comparison between experimental and theoretical data issued estimations for the magnitude of magnetic exchange interactions. The information on the electronic structure of the LaNi5-xMex (Me=Cu, Al) allowed a better understanding of their magnetic behavior. The changes induced in the electronic structure of the parent compound by partial substitutions of nickel by copper or aluminum are discussed.

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Yes / This paper aims at providing an overview of latest advances in space weather modeling in an operational environment in Europe, including both the introduction of new models and improvements to existing codes and algorithms that address the broad range of space weather's prediction requirements from the Sun to the Earth. For each case, we consider the model's input data, the output parameters, products or services, its operational status, and whether it is supported by validation results, in order to build a solid basis for future developments. This work is the output of the Sub Group 1.3 "Improvement of operational models'' of the European Cooperation in Science and Technology (COST) Action ES0803 "Developing Space Weather Products and services in Europe'' and therefore this review focuses on the progress achieved by European research teams involved in the action.

Après des décennies de développement, l'ablation laser est devenue une technique importante pour un grand nombre d'applications telles que le dépôt de couches minces, la synthèse de nanoparticules, le micro-usinage, l’analyse chimique, etc. Des études expérimentales ainsi que théoriques ont été menées pour comprendre les mécanismes physiques fondamentaux mis en jeu pendant l'ablation et pour déterminer l’effet de la longueur d'onde, de la durée d'impulsion, de la nature de gaz ambiant et du matériau de la cible. La présente thèse décrit et examine l'importance relative des mécanismes physiques qui influencent les caractéristiques des plasmas d’aluminium induits par laser. Le cadre général de cette recherche forme une étude approfondie de l'interaction entre la dynamique de la plume-plasma et l’atmosphère gazeuse dans laquelle elle se développe. Ceci a été réalisé par imagerie résolue temporellement et spatialement de la plume du plasma en termes d'intensité spectrale, de densité électronique et de température d'excitation dans différentes atmosphères de gaz inertes tel que l’Ar et l’He et réactifs tel que le N2 et ce à des pressions s’étendant de 10‾7 Torr (vide) jusqu’à 760 Torr (pression atmosphérique). Nos résultats montrent que l'intensité d'émission de plasma dépend généralement de la nature de gaz et qu’elle est fortement affectée par sa pression. En outre, pour un délai temporel donné par rapport à l'impulsion laser, la densité électronique ainsi que la température augmentent avec la pression de gaz, ce qui peut être attribué au confinement inertiel du plasma. De plus, on observe que la densité électronique est maximale à proximité de la surface de la cible où le laser est focalisé et qu’elle diminue en s’éloignant (axialement et radialement) de cette position. Malgré la variation axiale importante de la température le long du plasma, on trouve que sa variation radiale est négligeable. La densité électronique et la température ont été trouvées maximales lorsque le gaz est de l’argon et minimales pour l’hélium, tandis que les valeurs sont intermédiaires dans le cas de l’azote. Ceci tient surtout aux propriétés physiques et chimiques du gaz telles que la masse des espèces, leur énergie d'excitation et d'ionisation, la conductivité thermique et la réactivité chimique. L'expansion de la plume du plasma a été étudiée par imagerie résolue spatio-temporellement. Les résultats montrent que la nature de gaz n’affecte pas la dynamique de la plume pour des pressions inférieures à 20 Torr et pour un délai temporel inférieur à 200 ns. Cependant, pour des pressions supérieures à 20 Torr, l'effet de la nature du gaz devient important et la plume la plus courte est obtenue lorsque la masse des espèces du gaz est élevée et lorsque sa conductivité thermique est relativement faible. Ces résultats sont confirmés par la mesure de temps de vol de l’ion Al+ émettant à 281,6 nm. D’autre part, on trouve que la vitesse de propagation des ions d’aluminium est bien définie juste après l’ablation et près de la surface de la cible. Toutefois, pour un délai temporel important, les ions, en traversant la plume, se thermalisent grâce aux collisions avec les espèces du plasma et du gaz. / After decades of development, laser ablation has become an important technique for a large number of applications such as thin film deposition, nanoparticle synthesis, micromachining, chemical analysis, etc. Experimental and theoretical studies have been conducted to understand the physical mechanisms of the laser ablation processes and their dependence on the laser wavelength, pulse duration, ambient gas and target material. The present dissertation describes and investigates the relative importance of the physical mechanisms influencing the characteristics of aluminum laser-induced plasmas. The general scope of this research encompasses a thorough study of the interplay between the plasma plume dynamics and the ambient gas in which they expand. This is achieved by imaging and analyzing the temporal and spatial evolution the plume in terms of spectral intensity, electron density and excitation temperature within various environments extending from vacuum (10‾7 Torr) to atmospheric pressure (760 Torr), in an inert gas like Ar and He, as well as in a chemically active gas like N2. Our results show that the plasma emission intensity generally differs with the nature of the ambient gas and it is strongly affected by its pressure. In addition, for a given time delay after the laser pulse, both electron density and plasma temperature increase with the ambient gas pressure, which is attributed to plasma confinement. Moreover, the highest electron density is observed close to the target surface, where the laser is focused and it decreases by moving away (radially and axially) from this position. In contrast with the significant axial variation of plasma temperature, there is no large variation in the radial direction. Furthermore, argon was found to produce the highest plasma density and temperature, and helium the lowest, while nitrogen yields intermediate values. This is mainly due to their physical and chemical properties such as the mass, the excitation and ionization levels, the thermal conductivity and the chemical reactivity. The expansion of the plasma plume is studied by time- and space-resolved imaging. The results show that the ambient gas does not appreciably affect plume dynamics as long as the gas pressure remains below 20 Torr and the time delay below 200 ns. However, for pressures higher than 20 Torr, the effect of the ambient gas becomes important and the shorter plasma plume length corresponds to the highest gas mass species and the lowest thermal conductivity. These results are confirmed by Time-Of-Flight (TOF) measurements of Al+ line emitted at 281.6 nm. Moreover, the velocity of aluminum ions is well defined at the earliest time and close to the target surface. However, at later times, the ions travel through the plume and become thermalized through collisions with plasma species and with surrounding ambient gas.

La compréhension et le contrôle des interactions intermoléculaires est d'une importance fondamentale dans les domaines de la reconnaissance moléculaire et de l'ingénierie cristalline, ainsi que dans les systèmes biologiques. Parmi les contacts faibles les plus fréquents qui lient les molécules dans les solides organiques nous trouvons la liaison halogène, la liaison chalcogène, et la liaison hydrogène faible. Dans cette thèse, des études expérimentales et théoriques de densité de charge rhô(r) basées sur la méthodologie QTAIM ont été effectuées pour l'analyse des liaisons halogènes et chalcogènes, et pour leur comparaison avec les liaisons hydrogène faibles. Pour ce faire, nous avons réalisé l'affinement multipolaire de la densité électronique obtenue à partir de la diffraction des rayons-X sur monocristal, ainsi qu'à partir des calculs périodiques DFT. A l'issue de nos résultats, nous avons définie la nature de ces interactions faibles (électrophile-nucléophile) et caractérisé leur intensité et directionnalité. Basé sur la topologie de L(r) = ¬rhô delta inversé2 rhô(r), le descripteur électrostatique (delta(L/rhô)) nous a permis d'évaluer quantitativement l'interaction électrostatique entre les régions de concentration (CC) et de dilution (CD) de charge de la couche de valence des atomes. L'énergie d'interaction (Eint) a été décrite à partir de descripteurs topologiques de rhô(r). Nous nous sommes intéressés également à la formation de fragments structuraux récurrents, appelés synthons. Il a été prouvé que le synthon peut être créé non seulement par des groupements d'atomes similaires, mais aussi par des ensembles de sites CC et CD qui sont impliqués de façon similaire dans la formation de contact / Understanding and control of intermolecular interactions play a crucial role in molecular recognition, crystal engineering, and biological systems. Three very frequent weak contacts linking the molecules in organic solids are halogen, chalcogen, and weak hydrogen bondings. In this thesis, we perform experimental and theoretical charge density rho(r) studies based on the QTAIM methodology for analyzing halogen and chalcogen bonding, and for comparing them with weak hydrogen bonding, as derived from the high-resolution single crystal X-ray diffraction multipole-refined electron density and from density functional theory (DFT) calculations. Defining the nature of these weak interactions as electrophilic-nucleophilic, we particularly focus on their strength and directionality. Based on the topology of L(r) = ¬rho inverted delta2 rho(r), a proposed electrostatic descriptor (delta(L/rho)) permitted us to evaluate quantitatively the electrostatic intensity between charge concentration (CC) and charge depletion (CD) regions belonging to the valence shell of the interacting atoms. The interaction energy (Eint) was described from the topological properties of rho(r). The attention has been also paid to the formation of recurrent structural fragments, called synthons. By the developed approach, it is proved that the synthon arrangement can be created not only by groups of atoms, but also by sets of CC and CD sites similarly involved in the contact formation

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