No description available.

The vegetation of New Zealand has undergone extreme changes during the period of European settlement, with not only forest clearance but a deliberate attempt to replace the native vegetation with species from Europe and later from other parts of the world. Garden escapes continue this process to the current day. Several European ferns that have been introduced to New Zealand gardens have subsequently escaped. At the time of writing D. filix-mas is the most obvious and probably the most abundant in the rural areas of Canterbury having been observed in a wide range of habitats from suburban to farm, to forests both plantation and montane and in shrublands. This thesis investigates some of the ecology of D. filix-mas and explores its potential as a weed detrimental to New Zealand’s indigenous ecosystems. An extensive literature review revealed that in the Northern Hemisphere D. filix-mas grows over a wide range of climates, vegetation types and soils. However the literature review did not clearly show the forest light conditions under which D. filix-mas grows nor could the Northern Hemisphere experience in deciduous woodlands and coniferous forests be directly carried over into New Zealand’s podocarps, evergreen hardwood and evergreen beech forests. An experiment was designed to investigate tolerance to shade and field data was collected at several sites across North Canterbury for subsequent investigation with ordination and standard statistical methods. Records from around New Zealand were collated and used to generate a map of potential extent using the Land Environments New Zealand dataset. Positive growth was achieved under all shade treatments including the heaviest at 96% shade. However the field data suggests that under some of the lowest light availability D. filix-mas does not grow. In the field D. filix-mas is found in diverse habitats with a preference for sheltered sites with more southerly than northerly aspects. Interpretation of the ordination output combined with knowledge of the sites suggests that D. filix-mas is mostly associated with degraded sites and sites of past disturbance. Regenerating kanuka is a reliable place in which to find D. filix-mas but relatively natural beech forest is not. D. filix-mas can potentially grow over much of the South Island particularly in drier areas and can be invasive following disturbance and when grazing is removed, making it a potential problem for indigenous forest restoration efforts.

Ammonia, a colorless gas with a characteristic pungent odor, is produced by various industrial and agricultural activities. Emissions of ammonia into the atmosphere not only cause a nuisance in the vicinity of the sources, but also have various environmental effects, such as eutrophication and acidification of terrestrial and aquatic ecosystems, and visibility problems resulting from the formation of aerosols. The traditional treatment of ammonia emissions is based on physical and/or chemical processes, both of which are expensive and produce secondary pollutants. Biological methods are effective and economical for biodegradable odorants and VOC contaminants. This study used fixed-film bioreactors, a biofilter and a biotrickling filter, to remove and oxidize gas-born ammonia. Firstly, a pilot-scale biofilter consisted of two columns (40 cmW ¡Ñ 40 cmL ¡Ñ 70 cmH acrylic column) arranged in series. A medium consisting solely of fern chips, on which biofilms were cultivated, was used as a packing material. The biofilter was tested continuously for 110 days, measuring the removal efficiency, empty bed residence time (EBRT), removal capacity, pressure drop, moisture content and pH. Most of ammonia was eliminated in the first biofiltration column and the removal efficiency increased with the increase in EBRT. Complete removal of the influent ammonia (20-120 ppm) was obtained with an ammonia loading as high as 5.4 g N kg-1 dry media d-1 during the experiment. The Michaelis-Menten equation was tested to be adequate for modeling the ammonia elimination kinetics in the biofilter and the maximum removal rate (Vm) and the half-saturation constant (Ks) were estimated to be 28.2 g N kg-1 dry media d-1 and 129 ppm, respectively. Secondly, a pilot-scale reactor, consisting of a set of two-stage-in-series biotrickling filters, an influent gas supply system and a liquid recirculation system, was utilized to treat ammonia in an air stream. Each stage of the biotrickling filter was constructed from a 20 cm ¡Ñ 200 cm (inner diameter ¡Ñ height) acrylic column packed with cokes (average diameter = 3.0 cm, specific area = 150 m2/m3) of 125 cm height. Experimental results indicate that a time of 30 days is required for development of biofilms for nitrification of the absorbed ammonia from the gas. Long-term (187 days) experimental results show that, in the conditions of EBRT (empty bed gas retention time) = 7.25 s, ¡§circulation liquid/gas¡¨ flow rate ratio = 7.7 L m-3, and liquid pH = 6.65, the level of ammonia in the influent gas was reduced from 230 to 4.0 ppm. With the volumetric ammonia loading of less than 7.37 g NH3-N m-3 hr-1, the system could achieve ammonia removal and nitrification efficiencies of 98 and 94%, respectively, without supplementary glucose as a carbon source. However, with a loading of 13.1 g NH3-N m3 h-1, both decreased gradually due to a lake of carbon source and an accumulation of ammonium and nitrite ions in the recirculation liquid.

Doctor of Philosophy(PhD) / Soil contamination with heavy metal(loid)s is a major environmental problem that requires effective and affordable remediation technologies. The utilisation of plants to remediate heavy metal(loid)s contaminated soils has attracted considerable interest as a low cost green remediation technology. The process is referred to as phytoremediation, and this versatile technology utilises plants to phytostabilise and/or phytoextract heavy metal(loid)s from contaminated soils, thereby effectively minimising their threat to ecosystem, human and animal health. Plants that can accumulate exceptionally high concentrations of heavy metal(loid)s into above-ground biomass are referred to as hyperaccumulators, and may be exploited in phytoremediation, geobotanical prospecting and/or phytomining of low-grade ore bodies. Despite the apparent tangible benefits of utilising phytoremediation techniques, a greater understanding is required to comprehend the ecophysiological aspects of species suitable for phytoremediation purposes. A screening study was instigated to assess phytoremediation potential of several fern species for soils contaminated with cadmium (Cd), chromium (Cr), copper (Cu), nickel (Ni), lead (Pb) and zinc (Zn). Hyperaccumulation was not observed in any of the studied species, and in general, species excluded heavy metal uptake by restricting their translocation into aboveground biomass. Nephrolepis cordifolia and Hypolepis muelleri were identified as possible candidates in phytostabilisation of Cu-, Pb-, Ni- or Zn-contaminated soils and Dennstaedtia davallioides appeared favourable for use in phytostabilisation of Cu- and Zn-contaminated soils. Conversely, Blechnum nudum, B. cartilagineum, Doodia aspera and Calochlaena dubia were least tolerant to most heavy metals and were classified as being least suitable for phytoremediation purposes Ensuing studies addressed the physiology of arsenic (As) hyperaccumulation in a lesser known hyperaccumulator, Pityrogramma calomelanos var. austroamericana. The phytoremediation potential of this species was compared with that of the well known As hyperaccumulator Pteris vittata. Arsenic concentration of 3,008 mg kg–1 dry weight (DW) occurred in P. calomelanos var. austroamericana fronds when exposed to 50 mg kg–1 As without visual symptoms of phytotoxicities. Conversely, P. vittata was able to hyperaccumulate 10,753 mg As kg–1 DW when exposed to 100 mg kg–1 As without the onset of phytotoxicities. In P. calomelanos var. austroamericana, As was readily translocated to fronds with concentrations 75 times greater in fronds than in roots. This species has the potential for use in phytoremediation of soils with As levels up to 50 mg kg–1. Localisation and spatial distribution of As in P. calomelanos var. austroamericana pinnule and stipe tissues was investigated using micro-proton induced X-ray emission spectrometry (µ-PIXE). Freeze-drying and freeze-substitution protocols (using tetrahydrofuran [THF] as a freeze-substitution medium) were compared to ascertain their usefulness in tissue preservation. Micro-PIXE results indicated that pinnule sections prepared by freeze-drying adequately preserved the spatial elemental distribution and tissue structure of pinnule samples. In pinnules, µ-PIXE results indicated higher As concentration than in stipe tissues, with concentrations of 3,700 and 1,600 mg As kg–1 DW, respectively. In pinnules, a clear pattern of cellular localisation was not resolved whereas vascular bundles in stipe tissues contained the highest As concentration (2,000 mg As kg–1 DW). Building on these µ-PIXE results, the chemical speciation of As in P. calomelanos var. austroamericana was determined using micro-focused X-ray fluorescence (µ-XRF) spectroscopy in conjunction with micro-focused X-ray absorption near edge structure (µ-XANES) spectroscopy. The results suggested that arsenate (AsV) absorbed by roots was reduced to arsenite (AsIII) in roots prior to transport through vascular tissues as AsV and AsIII. In pinnules, AsIII was the predominant species, presumably as aqueous-oxygen coordinated compounds. Linear least-squares combination fits of µ-XANES spectra showed AsIII as the predominant component in all tissues sampled. The results also revealed that sulphur containing thiolates may, in part sequester accumulated As. The final aspect of this thesis examined several ecophysiological strategies of Ni hyperaccumulation in Hybanthus floribundus subsp. floribundus, a native Australian perennial shrub species and promising candidate in phytoremediation of Ni-contaminated soils. Micro-PIXE analysis revealed that cellular structure in leaf tissues prepared by freeze-drying was adequately preserved as compared to THF freeze-substituted tissues. Elemental distribution maps of leaves showed that Ni was preferentially localised in the adaxial epidermal tissues and leaf margin, with concentration of 10,000 kg–1 DW in both regions. Nickel concentrations in stem tissues obtained by µ-PIXE analysis were lower than in the leaf tissues (1,800 mg kg–1 vs. 7,800 mg kg–1 DW, respectively), and there was no clear pattern of compartmentalisation across different anatomical regions. It is possible that storage of accumulated Ni in epidermal tissues may provide Ni tolerance to this species, and may further act as a deterrent against herbivory and pathogenic attack. In H. floribundus subsp. floribundus seeds, µ-PIXE analysis did not resolve a clear pattern of Ni compartmentalisation and suggests that Ni was able to move apoplastically within the seed tissues. The role of organic acids and free amino acids (low molecular weight ligands [LMW]) in Ni detoxification in H. floribundus subsp. floribundus were quantified using high performance liquid chromatography (HPLC) and ultra performance liquid chromatography (UPLC). Nickel accumulation stimulated a significant increase in citric acid concentration in leaf extracts, and based on the molar ratios of Ni to citric acid (1.3:1–1.7:1), citric acid was sufficient to account for approximately 50% of the accumulated Ni. Glutamine, alanine and aspartic acid concentrations were also stimulated in response to Ni hyperaccumulation and accounted for up to 75% of the total free amino acid concentration in leaf extracts. Together, these LMW ligands may complex with accumulated Ni and contribute to its detoxification and storage in this hyperaccumulator species. Lastly, the hypothesis that hyperaccumulation of Ni in certain plants may act as an osmoticum under water stress (drought) was tested in context of H. floribundus subsp. floribundus. A 38% decline in water potential and a 68% decline in osmotic potential occurred between water stressed and unstressed plants, however, this was not matched by an increase in accumulated Ni. The results suggested that Ni was unlikely to play a role in osmotic adjustment in this species. Drought stressed plants exhibited a low water use efficiency which might be a conservative ecophysiological strategy enabling survival of this species in competitive water-limited environments.

AN ABSTRACT OF THE DISSERTATION OF RENEE A LOPEZ SWALLS, for the Doctor of Philosophy degree in PLANT BIOLOGY, presented on June 27, 2016, at Southern Illinois University Carbondale. TITLE: THE SPECIAL WALLS AROUND GAMETES IN CERATOPTERIS RICHARDII AND AULACOMNIUM PALUSTRE: USING IMMUNOCYTOCHEMISTRY TO EXPOSE STRUCTURE, FUNCTION, AND DEVELOPMENT MAJOR PROFESSOR: Dr. Karen S. Renzaglia Gametes are arguably the most important cells formed during the sexual life cycle of plants. The ancestral condition of gametes in land plants is the production of small motile sperm cells and larger non-motile eggs. Unique walls or cell matrices are formed during the development of these highly specialized cells, and are integral to their proper development and maturation. Yet, the polysaccharide composition, structural function, and metabolic processes of these special gamete cell walls remain unexplored beyond examination in the light microscope. Utilizing histochemical techniques coupled with immunocytochemical localizations with monoclonal antibodies (MAbs), I give a detailed survey of AGP and cell wall polymer distribution during male and female gametogenesis in the model fern, Ceratopteris richardi, and for comparison with both Ceratopteris and seed plants, I examined the same cell wall polymers during spermatogenesis in Aulacomnium palustre, a moss species. AGPs are abundant in the extraprotoplasmic matrix that surrounds differentiating sperm and egg cells in the fern, Ceratopteris richardii. During spermatogenesis, AGPs are speculated to regulate growth of flagella and cell morphogenesis through cell signaling via Ca+2 oscillations. Immunogold localizations revealed that AGPs are differentially expressed in the egg envelope in C. richardii. These glycoproteins are extremely abundant prior to fertilization but decrease substantially after fusion of the male gamete with the egg cytoplasm. Contrary to the AGP-filled matrix surrounding developing spermatids, developing eggs are bathed in (1,5)-α-L-arabinan pectins and not AGPs. Lastly, I examined the unique cell walls that are integral to sperm cell differentiation and release in both Ceratopteris and Aulacomnium. The preponderance of callose and hemicelluloses in the walls of the male gametes of Ceratopteris and Aulacomnium, respectively, and the importance of these polysaccharides in development are discussed. Taken together, the studies that comprise this dissertation advance significantly our understanding of cell wall dynamics during gametogenesis in early land plants.

No description available.

This thesis describes the development of methods for automatically obtaining coarse gaze direction estimates for pedestrians in surveillance video. Gaze direction estimates are beneficial in the context of surveillance as an indicator of an individual's intentions and their interest in their surroundings and other people. The overall task is broken down into two problems. The first is that of tracking large numbers of pedestrians in low resolution video, which is required to identify the head regions within video frames. The second problem is to process the extracted head regions and estimate the direction in which the person is facing as a coarse estimate of their gaze direction. The first approach for head tracking combines image measurements from HOG head detections and KLT corner tracking using a Kalman filter, and can track the heads of many pedestrians simultaneously to output head regions with pixel-level accuracy. The second approach uses Markov-Chain Monte-Carlo Data Association (MCMCDA) within a temporal sliding window to provide similarly accurate head regions, but with improved speed and robustness. The improved system accurately tracks the heads of twenty pedestrians in 1920x1080 video in real-time and can track through total occlusions for short time periods. The approaches for gaze direction estimation all make use of randomised decision tree classifiers. The first develops classifiers for low resolution head images that are invariant to hair and skin colours using branch decisions based on abstract labels rather than direct image measurements. The second approach addresses higher resolution images using HOG descriptors and novel Colour Triplet Comparison (CTC) based branches. The final approach infers custom appearance models for individual scenes using weakly supervised learning over large datasets of approximately 500,000 images. A Conditional Random Field (CRF) models interactions between appearance information and walking directions to estimate gaze directions for head image sequences.

Thesis (doctoral)--Universität Mannheim, 2002. / Includes bibliographical references (p. 295-304).

Este trabajo está enfocado en la relación entre la productividad y la riqueza de especies de helechos terrestres, y en la disponibilidad de nutrientes a través de un gradiente altitudinal en Ecuador. El trabajo de campo fue realizado durante tres años entre 2009 y 2011, el cual fue llevado a cabo en 8 niveles altitudinales entre 500m y 4000m en la Cordillera Oriental de los Andes ecuatorianos. Diversidad, biomasa, productividad y caracteres funcionales de las hojas de los helechos terrestres fueron estudiados en tres cuadrantes permanentes de 400m2 por cada elevación. Se reportaron un total de 91 especies de helechos terrestres en 32 géneros y 18 familias. A través del gradiente altitudinal, el pico más alto de riqueza de especies se registró en elevaciones medias y la riqueza de especies estuvo débilmente relacionada a medidas de productividad del ecosistema y más fuerte relacionado a la productividad de los hehechos terrestres, lo cual podría estar determinado por un incremento en el número de individuos de helechos y por la disponibilidad de nichos. Sin embargo, en cada nivel altitudinal la relación entre la riqueza de especies de helechos y la productividad de helechos fue negativa, lo cual principalmente se debe a la competencia interespecífica; es decir, en ambas escalas espaciales de este estudio, la diversidad de helechos parece estar limitada por el número de nichos disponibles y la competencia para ocupar estos nichos. Al comparar los caracteres funcionales de las hojas de helechos y árboles a través del gradiente altitudinal se observó similaridades entre ellos. Sin embargo, se encontró una diferencia en el área específica de las hojas entre helechos y árboles, lo cual refleja los diferentes niveles de luz de ambas formas de vida. Respecto los cambios altitudinales en biomasa y productividad de helechos y árboles se encontró una notable diferencia entre estas dos formas de vida, lo cual apoya la hipótesis de que ambos grupos de plantas están creciendo limitados por diferentes factores.

<p>The fern family Cystopteridaceae has been a thorn in the side of fern phylogeneticists, on many levels. Until this thesis, its basic existence (as a deeply isolated clade) and composition were unrecognized, hypotheses as to the relationships of its constituents within the broader fern tree-of-life were wildly inconsistent, the relationships of its genera to each other were contested, the species limits within those genera weakly understood, and the relationships among those species unknown. This thesis first establishes the broad evolutionary context for the family, which is that it is the first-diverging branch in Eupolypods II (it is sister to the rest of the eupolypod II clade). Eupolypods II is a large clade, containing nearly a third of extant fern species, making the Cystopteridaceae's position pivotal to a full understanding of fern evolution. </p><p>The evolution of the Eupolypods II is marked by an "ancient, rapid radiation" at the base of the clade, which helps to explain the difficulty that this broad group has historically posed to evolutionary biologists. Molecular data from five plastid loci show that Eupolypods II is comprised of 10 deeply divergent lineages, each worthy of recognition at the rank of family: Cystopteridaceae, Rhachidosoraceae, Diplaziopsidaceae, Hemidictyaceae, Aspleniaceae, Thelypteridaceae, Woodsiaceae, Onocleaceae, Blechnaceae, and Athyriaceae. The ancestors of Cystopteridaceae diverged from those of the rest of the clade approximately 100 million years ago, and the family is now comprised of five extant genera: Acystopteris, Cystoathyrium (the only genus for which we lack molecular data--it may be extinct), Cystopteris, Gymnocarpium, and ×Cystocarpium.</p><p>Within the family, the relationships of Cystoathyrium are unknown. Acystopteris is sister to Cystopteris, and those two genera, together, are sister to Gymnocarpium. Gymnocarpium is the maternal parent of ×Cystocarpium, so that genus falls within Gymnocarpium in phylogenetic trees based on maternally transmitted loci (i.e., plastid or mitochondrial loci). Plastid data resolve a basal trichotomy in Gymnocarpium, among the G. disjunctum clade, the G. robertianum clade, and core Gymnocarpium. The earliest diverging branch of core Gymnocarpium is the morphologically anomalous G. oyamense, followed by a split that separates G. appalachianum and G. jessoense parvulum (on one side) from G. remotepinnatum and G. jessoense jessoense, on the other. In Acystopteris, the first division surprisingly separates A. taiwaniana (which is frequently treated as a variety of A. japonica) from A. japonica + A. tenuisecta (which are morphologically very distinct from each other).</p><p>The evolution of Cystopteris is, as expected, more complex. The first lineage to diverge from the rest of the genus is the one that gave rise to C. montana. The next division, however, is unclear; molecular data infer a trichotomy among the sudetica clade (containing C. sudetica, C. moupinensis, and C. pellucida), the bulbifera clade (containing C. bulbifera and its related allopolyploids C. tennesseensis and C. utahensis), and the C. fragilis complex. Within the C. fragilis complex relationships (and species limits) get particular messy. The diploid species of eastern North America--C. protrusa--is sister to the rest of the complex, but after that point the major named species (including C. fragilis and C. tenuis) cease to be monophyletic, being found on both sides of a major split, alongside such taxa as the Australian/New Zealand C. tasmanica, the Hawaiian C. douglasii, and the Mexican C. membranifolia and C. millefolia.</p><p>In the context of the deep divergence of Gymnocarpium from Cystopteris, and the complicated species-level patterns of relationship within each genus, it is particularly surprising that molecular data confirm that ×Cystocarpium is a hybrid between Gymnocarpium dryopteris and a European tetraploid member of the Cystopteris fragilis complex. The ancestors of Cystopteris diverged from those of Gymnocarpium approximately 58 million years ago, meaning that the ×Cystocarpium hybridization event (which happened very recently) united genomes that contain, between them, over 100 million years of independent evolution. This breadth of divergence makes ×Cystocarpium the most extreme example of wide hybridization currently documented, with important implications for the pace of evolution of reproductive isolation, and thus for species formation.</p><p>This thesis ends with a tentative synopsis of the Cystopteridaceae (Appendix E). The family, as construed here, contains five genera and approximately 36 species (three in Acystopteris, one in Cystoathyrium, ~25 in Cystopteris, seven in Gymnocarpium, and one in ×Cystocarpium), plus two named subspecies (one each in Cystopteris and Gymnocarpium), and eight named sterile hybrids (three in Cystopteris and five in Gymnocarpium). Each of these tallies is highly subjective--much further research, with an emphasis on cytological and low-copy nuclear data, is necessary before we can hope to have any confidence in the species limits and finer-scale evolutionary patterns in this family.</p> / Dissertation