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Development and Application of Chlorine Solid-State Nuclear Magnetic Resonance and Quantum Chemical Calculations to the Study of Organic and Inorganic SystemsChapman, Rebecca 12 January 2012 (has links)
Chlorine solid-state nuclear magnetic resonance (SSNMR) is an ideal site specific probe of chloride-containing solids as SSNMR tensor properties are sensitive to the local chlorine environment. In this thesis, the development and use of chlorine SSNMR as a method to characterize a wide variety of chemical environments was explored. Ultrahigh field, and multi-field studies were essential to overcome the difficulties associated with the collection of chlorine SSNMR spectra.
Benchmark chemical shift (CS) and electric field gradient (EFG) tensor data were collected for organic chloride systems, including several amino acid hydrochlorides. These experiments demonstrated the sensitivity of chlorine SSNMR to slight changes in chemical environment. Quantum chemical calculations were used to complement experimental data, with the gauge-including projector augmented wave DFT (GIPAW-DFT) method shown to yield better agreement than B3LYP or RHF methods. The GIPAW-DFT method was found to slightly, but systematically, overestimate the chlorine quadrupolar coupling constant and the CS tensor span. Other organic chlorides examined by chlorine SSMR included a known ion receptor, meso-octamethylcalix[4]pyrrole. This compound was found to have a very small quadrupole interaction (QI), but significant chemical shift anisotropy (CSA). GIPAW-DFT calculations were also utilized and, in combination with the experimental results, used to identify the solvate structure of the material analyzed by NMR.
Chlorine SSNMR was further used to study different solvate structures and polymorphism. The technique was an effective means to distinguish different room temperature polymorphs of benzidine hydrochloride, despite the similarities of the chloride environments. In the case of magnesium chloride, chlorine SSNMR was sensitive to the level of hydration and through the use of GIPAW-DFT calculations, the identity of an unknown hydrate was determined.
An analysis of several group thirteen chlorides demonstrated that chlorine SSNMR was also capable of characterizing the chlorine environment in cases where the QI is large, despite the resulting broad line widths. In these systems GIPAW-DFT calculations also yielded excellent agreement with experimental values.
Throughout this research, chlorine SSNMR has been shown to be a useful and effective means to study both organic and inorganic chlorides, with computational methods proving to be an important complement to experimental data.
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Multinuclear Solid-State Magnetic Resonance Studies on ‘Exotic’ Quadrupolar Nuclei: Acquisition Methods, High-Order Effects, Quantum Chemical Computations, and NMR CrystallographyWiddifield, Cory 05 March 2012 (has links)
This dissertation attempts to extend the classes of halogen-containing systems which may be studied using solid-state nuclear magnetic resonance (SSNMR). As line shape broadening due to the quadrupolar interaction (QI) scales inversely with the applied field, high-field magnet technology is indispensable for this research. Combining advanced radiofrequency pulse sequences with high-field wideline data acquisition allowed for the collection of very broad SSNMR signals of all quadrupolar halogen nuclei (i.e., 35/37Cl, 79/81Br and 127I) within a reasonable amount of experimental time. The initial systems for study were of the MX2 variety (M = Mg, Ca, Sr, Ba; X = Cl, Br, I). In total, 9 anhydrous compounds were tested. The effects of hydrate formation were tested on 7 additional compounds. Systematic trends in the observed δiso values (and to a lesser extent, Ω and CQ) were found to be diagnostic of the extent of hydration in these materials. Resolving power was successfully tested using SrBr2, which possesses 4 magnetically unique sites. The composition of CaBr2•xH2O was convincingly determined using SSNMR data and the hydration trends noted above. The sensitivity of the QI to the local bonding environment (e.g., bond distance changes of less than 0.05 Å) was used to refine (when coupled with gauge-including projector augmented-wave density functional theory (GIPAW DFT) quantum chemical computations) the structure of MgBr2, and was used to correct prior NMR data for CaCl2 (earlier accounts had been performed upon a CaCl2 hydrate). During NMR data analysis of certain iodine-containing materials, it was found that standard fitting software (which uses perturbation theory) could not reproduce the observations. Proper analysis required the use of exact simulation software and allowed for the observation of high-order quadrupole-induced effects (HOQIE). This motivated further studies using rhenium-185/187 nuclei, where it was expected that HOQIE would be more dramatic. The observed rhenium SSNMR spectra possessed additional fine structure that had never been observed before experimentally, nor would be expected from currently-available perturbation theory analysis software. Lastly, preliminary results are shown where 127I SSNMR is used to study important supramolecular systems, and the composition of the popular synthetic reagent ‘GaI’ is elucidated.
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Study of ZrSiO4 phase transition using perturbed angular correlation spectroscopyRambo, Matthew P. January 2005 (has links)
Thesis (M.S.)--Miami University, Dept. of Physics, 2005. / Title from first page of PDF document. Document formatted into pages; contains [1], vii, 55 p. : ill. Includes bibliographical references (p. 53-55).
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Cálculos ab initio de interações entre Cd e bases nitrogenadas do DNA / Ab Initio calculations of interactions betweeen Cd and nitrogenous bases o DNAPhilippe Alexandre Divina Petersen 11 May 2011 (has links)
As interações hiperfinas são uma ótima ferramenta para estudar um sítio específico e obter informações importantes sobre o sistema. No presente trabalho analisamos de forma teórica as propriedades eletrônicas, estruturais e hiper nas do Cádmio (Cd) ligado às bases nitrogenadas do DNA. A motivação surgiu da colaboração com o grupo do prof. Artur W. Carbonari do Instituto de Pesquisas Energéticas e Nucleares (IPEN) e que tem como objetivo investigar o DNA e anticorpos de linhagens de camundongos infectados pela cepa Y de Trypanosoma cruzi, protozoário causador da doença de Chagas. A técnica Time Differential Perturbed Angular Correlation (TDPAC) foi utilizada para obter as medidas das interações hiperfinas do DNA. O núcleo de prova das medidas foi o 111Cd. Utilizamos uma abordagem quântica ab initio all-electron, dentro da Teoria do Funcional da Densidade (DFT), através do código computacional CP-PAW que combina o método Projector Augmented Wave (PAW) e a dinâmica molecular quântica de Car-Parrinello (CPMD). Ressaltamos que, até o presente momento, nenhum estudo com esta abordagem teórica e com este código computacional foi realizado para investigar as propriedades hiper nas do Cd ligado as bases nitrogenadas do DNA. / The Hyperfine interactions are good tools to study speci c sites and obtain important information about a given system. In this work we study electronic, structural and hyper ne properties of the Cadmium (Cd) coordinated to the DNA nitrogenous bases. The motivation for this study arose from a collaboration with the group of prof. Arthur W. Carbonari at the Institute of Energy and Nuclear Research (IPEN), which aims to investigate DNA and antibodies to strains of mice infected with the Trypanosoma cruzi, the protozoan that causes Chagas disease. The Time Differential Perturbed Angular Correlation (TDPAC) technique was used to obtain hypefine interactions measurements at a Cd probe bonded to DNA. We use ab initio all-electron calculations, within the Density Functional Theory (DFT) and we use the computer code CP-PAW that combines the Projector Augmented Wave (PAW) method and the Car-Parrinello (CP) quantum molecular dynamics approach to. We emphasize that, until now, no study with this theorectical approach and with this computer code was conducted to investigate the hyper ne properties of the Cd binding to the DNA bases.
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Novas parametrizações de funcionais híbridos para uso em cálculos relativísticos / New parameterizations of hybrid functionals to use in relativistic calculationsRégis Tadeu Santiago 25 July 2014 (has links)
A química computacional apresenta a grande vantagem de prover informações fundamentais para espécies moleculares propostas, antes mesmo de sua síntese em laboratório. A Teoria do Funcional da Densidade é bastante utilizada nesta área, produzindo resultados satisfatórios para um grande número de propriedades e sistemas, mas com uma menor demanda por recursos computacionais que métodos mais avançados. Entretanto, o desenvolvimento de funcionais que incluem efeitos relativísticos ainda se encontra num estágio inicial. Em geral, tais efeitos são importantes em compostos de átomos pesados, embora devam ser considerados também em sistemas com átomos mais leves se a propriedade em estudo for particularmente sensível, como é o caso do gradiente de campo elétrico na posição de núcleos em moléculas. Assim, na primeira etapa desta dissertação foi avaliado o desempenho de funcionais comuns de troca-correlação não relativísticos, quando utilizados em conjunto com o formalismo de quatro componentes (tratamento relativístico), no estudo dos gradientes de campo elétrico em núcleos de átomos (índio, antimônio, iodo, lutécio e háfnio) constituindo moléculas diatômicas. Foram investigados funcionais baseados nas aproximações da densidade local e do gradiente generalizado, funcionais híbridos e que incluem correções em termos da atenuação com a distância. Nossos resultados, que estão em acordo com observações da literatura, ressaltam o melhor desempenho de funcionais híbridos e com correções de atenuação para esta propriedade e demonstram a importância do uso do método indireto. Posteriormente, foi feita uma nova parametrização de alguns dos melhores funcionais não relativísticos selecionados na etapa anterior (B3LYP, PBE0 e CAM-B3LYP), dentro do formalismo de quatro componentes, para uso no cálculo destes mesmos gradientes num grupo teste de átomos (cobre, iodo, lantânio e ouro) em moléculas lineares. Nestes casos, os funcionais modificados propostos tiveram um bom desempenho geral e foram particularmente bem sucedidos para cobre e ouro. Finalmente, é possível destacar o funcional híbrido PBE0 e sua modificação, proposta neste estudo, por conta de seu desempenho excelente, tanto para os metais como para os demais elementos que tiveram seus EFGs investigados aqui. / The computational chemistry has the great advantage of providing fundamental information for proposed molecular species even before their synthesis in laboratory. The Density Functional Theory is widely used in this area, producing satisfactory results for a large number of properties and systems, but with a lower demand for computational resources than that of more advanced methods. However, the development of functionals that include relativistic effects is still at an early stage. In general, these effects are important in compounds containing heavy elements, but they must also be considered in systems of lighter atoms if the studied property was particularly sensitive, as occurs for the electric field gradient at the position of nuclei in molecules. Thus, the first step of this dissertation was to evaluate the performance of common non-relativistic exchange-correlation functionals when used in conjunction with the four component formalism (relativistic treatment) in the study of electric field gradients at the nuclei of atoms (indium, antimony, iodine, lutetium and hafnium) forming diatomic molecules. Functionals based on the local density approximation and generalized gradient approximation, hybrid functionals and the ones that include attenuation corrections were investigated. Our results, which are in agreement with observations in the literature, highlight the best performance of hybrid functionals and attenuation corrections for this property and demonstrate the importance of using the indirect approach. Subsequently, there was a new parameterization of some of the best non-relativistic functionals selected in the previous step (B3LYP, PBE0 and CAM - B3LYP) within the four component formalism for calculations of these same gradients in a trial group of atoms (copper, iodine, lanthanum and gold) into linear molecules. In these cases, the modified functionals proposed had a satisfactory overall performance and were particularly successful for copper and gold. Finally, it is possible to mention the excellent performance of the hybrid functional PBE0 and its modification proposed in this study for both metals and the other elements that had their EFGs investigated here.
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Development and Application of Chlorine Solid-State Nuclear Magnetic Resonance and Quantum Chemical Calculations to the Study of Organic and Inorganic SystemsChapman, Rebecca January 2012 (has links)
Chlorine solid-state nuclear magnetic resonance (SSNMR) is an ideal site specific probe of chloride-containing solids as SSNMR tensor properties are sensitive to the local chlorine environment. In this thesis, the development and use of chlorine SSNMR as a method to characterize a wide variety of chemical environments was explored. Ultrahigh field, and multi-field studies were essential to overcome the difficulties associated with the collection of chlorine SSNMR spectra.
Benchmark chemical shift (CS) and electric field gradient (EFG) tensor data were collected for organic chloride systems, including several amino acid hydrochlorides. These experiments demonstrated the sensitivity of chlorine SSNMR to slight changes in chemical environment. Quantum chemical calculations were used to complement experimental data, with the gauge-including projector augmented wave DFT (GIPAW-DFT) method shown to yield better agreement than B3LYP or RHF methods. The GIPAW-DFT method was found to slightly, but systematically, overestimate the chlorine quadrupolar coupling constant and the CS tensor span. Other organic chlorides examined by chlorine SSMR included a known ion receptor, meso-octamethylcalix[4]pyrrole. This compound was found to have a very small quadrupole interaction (QI), but significant chemical shift anisotropy (CSA). GIPAW-DFT calculations were also utilized and, in combination with the experimental results, used to identify the solvate structure of the material analyzed by NMR.
Chlorine SSNMR was further used to study different solvate structures and polymorphism. The technique was an effective means to distinguish different room temperature polymorphs of benzidine hydrochloride, despite the similarities of the chloride environments. In the case of magnesium chloride, chlorine SSNMR was sensitive to the level of hydration and through the use of GIPAW-DFT calculations, the identity of an unknown hydrate was determined.
An analysis of several group thirteen chlorides demonstrated that chlorine SSNMR was also capable of characterizing the chlorine environment in cases where the QI is large, despite the resulting broad line widths. In these systems GIPAW-DFT calculations also yielded excellent agreement with experimental values.
Throughout this research, chlorine SSNMR has been shown to be a useful and effective means to study both organic and inorganic chlorides, with computational methods proving to be an important complement to experimental data.
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Multinuclear Solid-State Magnetic Resonance Studies on ‘Exotic’ Quadrupolar Nuclei: Acquisition Methods, High-Order Effects, Quantum Chemical Computations, and NMR CrystallographyWiddifield, Cory January 2012 (has links)
This dissertation attempts to extend the classes of halogen-containing systems which may be studied using solid-state nuclear magnetic resonance (SSNMR). As line shape broadening due to the quadrupolar interaction (QI) scales inversely with the applied field, high-field magnet technology is indispensable for this research. Combining advanced radiofrequency pulse sequences with high-field wideline data acquisition allowed for the collection of very broad SSNMR signals of all quadrupolar halogen nuclei (i.e., 35/37Cl, 79/81Br and 127I) within a reasonable amount of experimental time. The initial systems for study were of the MX2 variety (M = Mg, Ca, Sr, Ba; X = Cl, Br, I). In total, 9 anhydrous compounds were tested. The effects of hydrate formation were tested on 7 additional compounds. Systematic trends in the observed δiso values (and to a lesser extent, Ω and CQ) were found to be diagnostic of the extent of hydration in these materials. Resolving power was successfully tested using SrBr2, which possesses 4 magnetically unique sites. The composition of CaBr2•xH2O was convincingly determined using SSNMR data and the hydration trends noted above. The sensitivity of the QI to the local bonding environment (e.g., bond distance changes of less than 0.05 Å) was used to refine (when coupled with gauge-including projector augmented-wave density functional theory (GIPAW DFT) quantum chemical computations) the structure of MgBr2, and was used to correct prior NMR data for CaCl2 (earlier accounts had been performed upon a CaCl2 hydrate). During NMR data analysis of certain iodine-containing materials, it was found that standard fitting software (which uses perturbation theory) could not reproduce the observations. Proper analysis required the use of exact simulation software and allowed for the observation of high-order quadrupole-induced effects (HOQIE). This motivated further studies using rhenium-185/187 nuclei, where it was expected that HOQIE would be more dramatic. The observed rhenium SSNMR spectra possessed additional fine structure that had never been observed before experimentally, nor would be expected from currently-available perturbation theory analysis software. Lastly, preliminary results are shown where 127I SSNMR is used to study important supramolecular systems, and the composition of the popular synthetic reagent ‘GaI’ is elucidated.
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Einfluss homogener und inhomogener Magnetfelder auf die Korrosion ferromagnetischer ElektrodenSüptitz, Ralph 18 October 2011 (has links)
Im Rahmen der vorliegenden Arbeit konnten Einflüsse magnetischer Felder, insbesondere mit hohen Gradienten der magnetischen Flussdichte, auf Korrosionsprozesse am Beispiel Eisen quantifiziert und deren Wirkungsmechanismus erklärt werden. Als ein besonders in technisch relevanten gering konzentrierten sauren wässrigen Lösungen bedeutsamer Effekt wurde eine sekundäre Wirkung der Feldgradientenkraft über den Mechanismus der Wahrung der Ladungsneutralität auf den pH-Wert an der Elektrodenoberfläche identifiziert. Somit konnte ein signifikanter Magnetfeldeinfluss auf die formal ladungstransferkontrollierte Korrosionsreaktion nachgewiesen werden.
Um die komplexen Korrosionsvorgänge an mehrphasigen NdFeB-Magneten mit paramagnetischer intergranularer Nd-reicher Phase aufklären zu können, war zunächst eine vertiefte Analyse der freien und anodischen Korrosionsreaktionen des Neodyms notwendig. Die dabei gewonnenen Erkenntnisse erlauben den Magnetfeldeinfluss bei der Korrosion aufmagnetisierter NdFeB-Magnete zu verstehen.
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Modelling of the deformation behaviour of a magnetic hydrogel in a magnetic field gradientCzichy, Charis, Odenbach, Stefan 27 November 2024 (has links)
An ink made of alginate and methylcellulose with embedded magnetite microparticles was developed for extrusion printing. Constructs, so-called scaffolds, are colonised with cells which can be activated by mechanical stimulation. In this work, a defined magnetic field gradient is applied to achieve non-contact deformation. However, the deformation behaviour or relevant material parameters of the hybrid material are unknown. While the properties were determined with experiments adapted to hydrogels, a separate experimental set-up for micro-computed tomography, adapting the Maxwell configuration, was developed to investigate the deformation behaviour. These analyses were performed depending on ageing and particle concentration. For these tests, strands were used as bending beams, since these are simple and well known systems. Firstly, a model for the bending curve was erected, which defines a range in which the real bending curve would be expected. It was compared with the measured bending curves. There was very good agreement for the first days. On day 14, the measured bending curves were still within the calculated range, but at the lower limit due to the shortcomings of the model as the violation of the small deformations condition at this point. Secondly, the bending as a function of incubation duration was observed by a series of radiograms when a magnetic field gradient was applied. From this, a functional approach was formulated to describe the system response. Some parameters have already been identified, for others a proposal is given. Thirdly, microscopic analyses were carried out to observe the effects of the field gradient on particle distribution and structure. It was revealed that a homogeneous particle distribution was found even after 2.5 h. Also, in the direction of the field gradient, no chains were formed and no damage of the network could be detected. The obtained results show, that the material is suitable for mechanical stimulation.
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MRI and NMR Investigations of Transport in Soft Materials and Explorations of Electron-Nuclear Interactions for Liquid-State Dynamic Nuclear PolarizationWang, Xiaoling 28 August 2015 (has links)
The first part of this dissertation (Chapters 1 to 4) describes the use of magnetic resonance techniques for polymeric material characterizations in solutions, with emphasis on methods utilizing magnetic field gradients - magnetic resonance imaging (MRI) and pulsed-field-gradient (PFG) NMR. The second part (Chapter 5) presents enhancements to dynamic nuclear polarization, an intensity enhancement approach for magnetic resonance techniques.
In Chapter 2, I illustrate a characterization method to quantify free polymer chain content in a polymer/DNA complex (polyplex) formulation via one-dimensional proton NMR experiments. This assessment of free polymer quantity has critical impacts on in vivo gene transfection efficiency, cellular uptake, as well as toxicity of polycationic gene delivery vectors. Specifically, I investigated the complexation properties of three different polymeric "theranostic" agents, which combine an imaging functionality on the polymer as well as a DNA/RNA complexation component. These agents are under development to allow real time clinical monitoring of drug delivery and efficacy using MRI. Our NMR method provides simple and quantitative assessment of free and DNA-complexed polymers, including the actual polymer amine to DNA phosphate molar ratio (N/P ratio) within polyplexes. The NMR results are in close agreement with the stoichiometric number of polymer/DNA binding obtained by isothermal titration calorimetry. The noninvasive nature of this method allows broad application to a range of polyelectrolyte coacervates, for understanding and optimizing polyelectrolyte complex formation.
Chapter 3 demonstrates a time-resolved MRI approach for measuring diffusion of drug-delivery polymeric nanoparticles on mm to cm scales as well as monitoring nanoparticle concentration distribution in bulk biological hydrogels. Our results show that as the particle size and surface charge become larger, collagen gel at tumor relevant concentration (1.0 wt.%) presents a more significant impediment to the diffusive transport of negatively charged nanoparticles. These results agree well with those obtained by fluorescence spectroscopies (neutral or slightly positively charged diffusing particles) as well as the proposed electrostatic bandpass theory of tumor interstitium (negatively charged particles). This study provides fundamental information for the design of polymeric theranostic vectors and carries implications that would benefit the understanding of nanoparticle transport in solid tumors. Furthermore, this work takes a significant step toward developing quantitative and real time in vivo monitoring of clinical drug delivery using MRI.
Chapter 4 addresses the application of PFG-NMR for the determination of weight-average molar mass (Mw) for polyanions that have anti-HIV activity through the measurement of polymer diffusion coefficients in solutions. The effective characterization of molecular weights of polyelectrolytes has been a general and growing problem for the polymer industry, with no clear solutions in sight. In this study, we obtained the molar masses (Mw) for two series of sulfonated copolymers using sodium polystyrene sulfonate samples as molecular weight standards. PFG-NMR has notable advantages over conventional techniques for the characterization of charged polymers and shows great promise for becoming an effective alternative to chromatography methods.
Chapter 5 is devoted to experimental and theoretical studies of liquid state dynamic nuclear polarization (DNP) via the Overhauser effect. Based on the adventurous work done by previous Dorn group members, we show that for 1H-nuclide-containing systems, the dipolar DNP enhancement can be significantly improved by decreasing the correlation time of the interaction by utilizing a supercritical fluid (SF CO2) which allows for greater dipolar enhancements at higher magnetic fields. For molecules containing the ubiquitous 13C nuclide, we show that previously unreported sp hybridized (H-C) alkyne systems represented by the phenylacetylene-nitroxide system exhibit very large scalar-dominated enhancements. Furthermore, we show for a wide range of molecular systems that the Fermi contact interaction can be computationally predicted via electron-nuclear hyperfine coupling and correlated with experimental 13C DNP enhancements. For biomedical applications, the enhancement of metabolites in SF CO2 followed by rapid dissolution in water or biological fluids is an attractive approach for future hyperpolarized NMR and MRI applications. Moreover, with the aid of density functional theory calculations, solution state DNP provides a unique approach for studying intermolecular weak bonding interaction of solutes in normal liquids and SF fluids. / Ph. D.
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