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Biological systems of bacteria were investigated at the single-cell and single-molecule level. Additionally, aspects of the techniques employed were studied. A unifying theme in each project is the reliance on optical imaging techniques coupled to microfluidic devices. Hypo-osmotic shock experiments with an Escherichia coli mechanosensitive channel deletion mutant were carried out at the single-cell level. E. coli MJF465 cells in which the three major mechanosensitive channel genes are deleted (∆mscL, ∆mscS, ∆mscK) show only 10% cell viability upon hypo-osmotic shock (from LB + 0.5 M NaCl into distilled water), compared to 90% viability of the wild-type strain. Bacterial cells were trapped with optical tweezers in microfluidic devices, enabling the first direct observation of single-cell behaviour upon hypo-osmotic shock. Phase-contrast microscopy revealed intra-population diversity in the cells response: Different features of lysis included cells bursting rapidly and leakage of ribosomes, DNA and protein from the cytoplasm. Fluorescence microscopy of hypo-osmotically-shocked GFP-expressing MJF465 cells showed either bursting of cells, which was a rare event, or fast leakage of GFP, indicating cell membrane ruptures. Data were analysed in terms of their kinetic behaviour and showed that lysis occurs on a timescale of milliseconds to seconds. The implications of these findings for the bacterial cell wall and cell membranes are discussed. Enzymes involved in homologous recombination and repair of double-stranded DNA (dsDNA) breaks are essential for maintaining genomic integrity in both eukaryotes and prokaryotes. RecBCD of E. coli and AddAB, found widely in bacteria, are involved in these processes, carrying out the same function. Both enzymes were studied kinetically with single-molecule total internal reflection fluorescence microscopy (TIRFM). Surface-tethered, hydrodynamically stretched lambda-DNA molecules, stained with YOYO-1, were imaged with TIRFM in a microfluidic flowcell. The RecBCD enzyme is a well characterised DNA helicase and was introduced to this system for method validation purposes. The AddAB enzyme of Bacteroides fragilis was then characterised as a helicase acting on lambda-DNA. It was found that AddAB helicase unwinds dsDNA with high processivity of on average 14,000 bp and up to 40,000 bp for individual enzyme complexes at an ATP-dependent rate ranging from 50-250 bp s−1 (for Mg2+-ATP concentrations larger or equal than 0.1 mM). This activity was detected by DNA binding dye (YOYO-1) displacement from the dsDNA and studied for different Mg2+-ATP concentrations, flow (shear) rates and different YOYO-1 staining ratios of DNA. Aspects of this last experimental setup were investigated. A kinetic analysis of intercalation of YOYO-1 into lambda-DNA is presented, occurring on a timescale of minutes. Different flow rates and staining ratios that influence the apparent (stretched) DNA molecule length were also examined. Several image analysis techniques were employed to enhance the data quality in images showing stretched lambda-DNA molecules. The Singular Value Decomposition was found to be the most effective technique which strongly reduces the noise in the obtained kymograph images.

A acidez do solo é um dos principais fatores limitantes à produção vegetal. Apesar da toxicidade por alumínio ter sido extensamente investigada, pouca atenção tem sido dada ao estresse causado pelo baixo pH em si. Existem diferenças marcantes entre células quanto à sensibilidade ao pH baixo que dependem do seu estado de crescimento e desenvolvimento celular e que devem ser exploradas para se entender o que determina a sensibilidade e tolerância a pH baixo. Em alguns casos, a suscetibilidade a pH baixo está relacionada a desarranjos na parede de células em crescimento, chegando a causar o rompimento da célula, como já foi demonstrado em pêlos radiculares em expansão. Por outro lado, o metabolismo oxidativo e a geração de espécies reativas de oxigênio (ROS) na parede podem influenciar neste processo por romper ou criar ligações dentro ou entre cadeias de polissacarídeos, modulando assim a extensibilidade da parede celular. Em células de tabaco (Nicotiana tabacum) cv. BY-2, há um aumento acentuado na sensibilidade ao pH baixo no final da fase lag da cultura, que ocorrre entre 12 e 24 h de cultivo. Os objetivos deste trabalho foram: a) Investigar se a mudança na sensibilidade pH baixo ocorre durante a retomada do ciclo celular e determinar, com o uso de inibidores do ciclo celular, o período do ciclo em que isto ocorre; b) verificar se o aumento da sensibilidade a pH baixo está relacionado com a expansão celular ou com alterações no potencial osmótico da célula; c) examinar o efeito da aplicação de H2O2 ou ascorbato sobre a resposta de células sensíveis a pH baixo; d) testar a hipótese de que a sensibilidade a pH baixo pode ser revertida por meio de um choque hipo-osmótico prévio; e) avaliar o possível papel da modulação oxidativa da parede celular na reversão de sensibilidade das células a pH baixo expostas ao choque hipo-osmótico. A retomada do ciclo celular é necessária para que ocorra a alteração de sensibilidade a pH baixo, pois a remoção de auxina (2,4-D) ou a adição de bloqueadores de canais de K+ impediu ou atrasou, respectivamente, a alteração na sensibilidade a pH baixo. O uso de inibidores do ciclo celular demonstrou que as células de BY-2 se tornam mais sensíveis a pH baixo durante o final da fase G1 mas antes do ponto de checagem da transição G1/S do ciclo celular. A aplicação de H2O2, diminuiu a suscetibilidade das células a pH baixo, ao contrário da aplicação de ascorbato. Foi demonstrado que a aplicação prévia de tratamento hipo-osmótico por 60 min reverteu a sensibilidade de células a pH baixo. A aplicação de inibidores de NAPDH oxidase da membrana plasmática e de peroxidases revelou a participação destas enzimas na reversão de sensibilidade das células a pH baixo, indicando a possibilidade de geração de ROS e de modulação oxidativa da parede. Embora já tenha sido descrito que ocorre uma explosão oxidativa com choque hipo-osmótico, ainda não havia sido demonstrado a conseqüência disto. Este trabalho fornece indícios de que uma explosão oxidativa poderia modificar a parede tornando-a mais resistente e a célula menos suscetível a pH baixo / Soil acidity is a major factor limiting plant growth worldwide. Although aluminum toxicity, which occurs only at low pH, has been extensively studied, little attention has been given to stress caused by low pH. There are marked differences in the sensitivity of cells to low pH which are contingent on the growth and developmental stage of the cells. These differences should be explored to further the understanding of the factors governing sensitivity and tolerance to low pH. In at least some cases, the susceptibility of cells to low pH is related to derangements in the wall of growing cells, which can cause ruptures or bursting of the cells, as has been clearly demonstrated in expanding root hairs. On the other hand, the oxidative metabolism and generation of reactive oxygen species (ROS) can modulate cell wall extensibility by breaking or making bonds within and between cell wall polymers. In tobacco (Nicotiana tabacum) cv. BY-2 cells, there is a sharp increase in sensitivity to low pH at the end of the lag phase of the cell culture, which occurs between 12 and 24 h of subculture. The objectives of this study were: a) determine if the changes in sensitivity to low pH occurred during the restart of the cell cycle and, by employing cell cycle inhibitors, at which points of the cycle does this occur; b) examine if the changes in sensitivity to low pH are related to cell expansion or changes in osmotic potential of the cell; c) examine how the application of H2O2 or ascorbate affects the response of cells to low pH; d) test the hypothesis that sensitivity of cells to low pH can be reverted by the previous application of a hypo-osmotic shock; e) evaluate the possible role of oxidative modulation of the cell wall in hypo-osmotic-induced reversal of the sensitivity of cells to low pH. The restart of the cell cycle was shown to be necessary for the change in sensitivity to low pH occur, since the absence of auxin (2,4-D) or the addition of K+ channel blockers prevented or delayed this change, respectively. The use of cell cycle inhibitors demonstrated that BY-2 cells become sensitive to low pH at the end of G1 but before the G1/S transition restriction point of the cell cycle. Exogenous H2O2, but not ascorbate, reduced the effect of low pH on sensitive cells. Sensitive cells submitted to 60 min hypo-osmotic treatment became insensitive to low pH. This reversal of sensitivity depended on the activity of plasma membrane NADPH oxidase and peroxidase, as evidenced by the use of DPI and SHAM, inhibitors of these enzymes, respectively. This suggests that ROS is generated and that oxidative modifications of the cell wall occur. Although hypo-osmotic treatments have been shown to generate an oxidative burst, its purpose or implication has not yet been shown. This study provides evidence that an oxidative burst might modify and strengthen the cell wall, making cells less susceptible to low pH

A acidez do solo é um dos principais fatores limitantes à produção vegetal. Apesar da toxicidade por alumínio ter sido extensamente investigada, pouca atenção tem sido dada ao estresse causado pelo baixo pH em si. Existem diferenças marcantes entre células quanto à sensibilidade ao pH baixo que dependem do seu estado de crescimento e desenvolvimento celular e que devem ser exploradas para se entender o que determina a sensibilidade e tolerância a pH baixo. Em alguns casos, a suscetibilidade a pH baixo está relacionada a desarranjos na parede de células em crescimento, chegando a causar o rompimento da célula, como já foi demonstrado em pêlos radiculares em expansão. Por outro lado, o metabolismo oxidativo e a geração de espécies reativas de oxigênio (ROS) na parede podem influenciar neste processo por romper ou criar ligações dentro ou entre cadeias de polissacarídeos, modulando assim a extensibilidade da parede celular. Em células de tabaco (Nicotiana tabacum) cv. BY-2, há um aumento acentuado na sensibilidade ao pH baixo no final da fase lag da cultura, que ocorrre entre 12 e 24 h de cultivo. Os objetivos deste trabalho foram: a) Investigar se a mudança na sensibilidade pH baixo ocorre durante a retomada do ciclo celular e determinar, com o uso de inibidores do ciclo celular, o período do ciclo em que isto ocorre; b) verificar se o aumento da sensibilidade a pH baixo está relacionado com a expansão celular ou com alterações no potencial osmótico da célula; c) examinar o efeito da aplicação de H2O2 ou ascorbato sobre a resposta de células sensíveis a pH baixo; d) testar a hipótese de que a sensibilidade a pH baixo pode ser revertida por meio de um choque hipo-osmótico prévio; e) avaliar o possível papel da modulação oxidativa da parede celular na reversão de sensibilidade das células a pH baixo expostas ao choque hipo-osmótico. A retomada do ciclo celular é necessária para que ocorra a alteração de sensibilidade a pH baixo, pois a remoção de auxina (2,4-D) ou a adição de bloqueadores de canais de K+ impediu ou atrasou, respectivamente, a alteração na sensibilidade a pH baixo. O uso de inibidores do ciclo celular demonstrou que as células de BY-2 se tornam mais sensíveis a pH baixo durante o final da fase G1 mas antes do ponto de checagem da transição G1/S do ciclo celular. A aplicação de H2O2, diminuiu a suscetibilidade das células a pH baixo, ao contrário da aplicação de ascorbato. Foi demonstrado que a aplicação prévia de tratamento hipo-osmótico por 60 min reverteu a sensibilidade de células a pH baixo. A aplicação de inibidores de NAPDH oxidase da membrana plasmática e de peroxidases revelou a participação destas enzimas na reversão de sensibilidade das células a pH baixo, indicando a possibilidade de geração de ROS e de modulação oxidativa da parede. Embora já tenha sido descrito que ocorre uma explosão oxidativa com choque hipo-osmótico, ainda não havia sido demonstrado a conseqüência disto. Este trabalho fornece indícios de que uma explosão oxidativa poderia modificar a parede tornando-a mais resistente e a célula menos suscetível a pH baixo / Soil acidity is a major factor limiting plant growth worldwide. Although aluminum toxicity, which occurs only at low pH, has been extensively studied, little attention has been given to stress caused by low pH. There are marked differences in the sensitivity of cells to low pH which are contingent on the growth and developmental stage of the cells. These differences should be explored to further the understanding of the factors governing sensitivity and tolerance to low pH. In at least some cases, the susceptibility of cells to low pH is related to derangements in the wall of growing cells, which can cause ruptures or bursting of the cells, as has been clearly demonstrated in expanding root hairs. On the other hand, the oxidative metabolism and generation of reactive oxygen species (ROS) can modulate cell wall extensibility by breaking or making bonds within and between cell wall polymers. In tobacco (Nicotiana tabacum) cv. BY-2 cells, there is a sharp increase in sensitivity to low pH at the end of the lag phase of the cell culture, which occurs between 12 and 24 h of subculture. The objectives of this study were: a) determine if the changes in sensitivity to low pH occurred during the restart of the cell cycle and, by employing cell cycle inhibitors, at which points of the cycle does this occur; b) examine if the changes in sensitivity to low pH are related to cell expansion or changes in osmotic potential of the cell; c) examine how the application of H2O2 or ascorbate affects the response of cells to low pH; d) test the hypothesis that sensitivity of cells to low pH can be reverted by the previous application of a hypo-osmotic shock; e) evaluate the possible role of oxidative modulation of the cell wall in hypo-osmotic-induced reversal of the sensitivity of cells to low pH. The restart of the cell cycle was shown to be necessary for the change in sensitivity to low pH occur, since the absence of auxin (2,4-D) or the addition of K+ channel blockers prevented or delayed this change, respectively. The use of cell cycle inhibitors demonstrated that BY-2 cells become sensitive to low pH at the end of G1 but before the G1/S transition restriction point of the cell cycle. Exogenous H2O2, but not ascorbate, reduced the effect of low pH on sensitive cells. Sensitive cells submitted to 60 min hypo-osmotic treatment became insensitive to low pH. This reversal of sensitivity depended on the activity of plasma membrane NADPH oxidase and peroxidase, as evidenced by the use of DPI and SHAM, inhibitors of these enzymes, respectively. This suggests that ROS is generated and that oxidative modifications of the cell wall occur. Although hypo-osmotic treatments have been shown to generate an oxidative burst, its purpose or implication has not yet been shown. This study provides evidence that an oxidative burst might modify and strengthen the cell wall, making cells less susceptible to low pH

Gegenstand der Arbeit sind Zusammenhänge zwischen physikochemischen Eigenschaften und Funktionen der Exine bei Ausbreitung, Bestäubung und Befruchtung. Dabei bewährte sich der Einsatz der 3-kammrigen Sporopolleninkapseln (Zentralkapsel und Sacci) in der Permeationschromatographie. Sowohl kinetisch bedingte chromatographische Dispersion kleiner Moleküle als auch Konzentrationsänderungen von Zuckern und Dextranmolekülen im Medium wurden zur Bestimmung von Permeabilitätskoeffizienten der Nexine genutzt. Die Wasserabsorptionskapazität von Exinefragmenten und die hydraulische Leitfähigkeit der Nexine wurden anhand von Konzentrationsänderungen ausgeschlossener Dextranmoleküle ermittelt. Das Tectum der saccalen Sexine ist eine Mikrofiltermembran mit scharfer Trenngrenze im Submikrometerbereich; daher werden an den Sacci nur Hydrokolloide mit Stokes''schen Radius über 100 nm (z.B. aus nativem Dextran) ausgeschlossen. Die Nexine ist eine nicht-ideale Umkehrosmose-Membran, die in Zucker- und Salzlösungen hohe Reflexionskoeffizienten zeigt; zusätzlich besitzt sie wenige große Poren, die den Austausch von Zuckern und selbst kleinen Polymermolekülen ermöglichen. Die hydraulische Leitfähigkeit der Nexine liegt im Größenbereich derjenigen von Plasmamembranen (0,39-0,48 µm s-1 MPa-1); die Ergebnisse zeigen, dass die Exine weder die Nährstoffaufnahme des Sporoplasten aus der lokulären Flüssigkeit noch dessen rasche Rehydratation in der Mikropyle behindert. Die Einfaltungen der distalen Nexine (oberhalb der Sacci) und die Omega-Faltung der Exine zwischen den Sacci (Leptom) bieten beim Quellvorgang Schutz vor zu schneller Flächenausdehnung der Plasmamembran. Der Corpus kann mit konzentrierten Elektrolytlösungen beladen werden. Beim anschließenden osmotischen Schwellen in Wasser reißt die Exine, und der Sporoplast wird mit anhaftender Intine ausgeschleudert. Wasser und andere polare Flüssigkeiten adhärieren stärker als hydrophobe Flüssigkeiten an Sporopollenin. Die Sporopolleninmatrix weist eine hohe Feststoffdichte auf, ist wenig quellfähig (0,18 mL g-1 TM) und deformationsstabil. Dies ermöglicht die Pulverbildung beim Trocknen. / Subject of this thesis are relationships between physicochemical properties and functions of the exine concerning propagation, pollination and fecundation. Here the application of the 3-chambered sporopollenin-microcapsules (central capsule and sacci) in permeation chromatography proved of value. Both the kinetically dependent dispersion of small molecules and changes in concentration of sugars and dextran molecules in the medium were analysed to determine permeability coefficients of the nexine. The water absorption capacity of exine fragments and the hydraulic conductance of the nexine were calculated by means of changes in concentrations of excluded dextran molecules. The tectum of the saccal sexine is a microfiltration membrane with a sharp cut off in the submicrometer range; thus hydrocolloids with Stokes´radii over 100 nm (e.g. from native dextran) are excluded from the sacci. The nexine is a non-ideal reverse osmosis membrane having high reflexion coefficients in sugar and salt solutions; in addition few large pores allow the exchange of sugars and even of small polymers. The hydraulic conductance of the nexine is in the range typically for plasmamembranes (0.39-0.48 µm s-1 MPa-1); the results indicate that the exine does neither obstruct the uptake of nutrients by the sporoplast from the locular fluid nor hinder the rapid rehydration in the micropyle. When rehydrating, the distal foldings of the nexine (above the sacci) and the omega-like folding of the exine between the sacci (leptom), provide protection for the plasmamembrane when its surface area has to increase too rapidly. The corpus can be loaded with a concentrated electrolyte solution. When subsequently transferred into water the exine rupture and the sporoplast along with the intact intine is ejected. Water and other polar liquids adhere stronger to sporopollenin than hydrophobic ones. The matrix of sporopollenin show a high density in its solid content, water absorption capacity is low (0.18 mL g-1 DM) and it is resistant to deformation. This enable the formation of powder while dehydrating.